[Insight-users] DicomSeriesReadImageWrite2_Problem to read dcmSeries

Tue May 25 11:21:12 EDT 2010

Hi Daniela,

Thanks for the clarification.

The methods that you uncovered seems
to be a good way to fix this problem.

The only concern may be that while saving
the images in JPEG, you may have lost a
some precision in the pixel values (since
JPEG compression is lossy.)

If keeping image precision is critical for your
application, you may want to save the images
in a lossless format (e.g. png) and still do the
same trick in ITK to read the series of slices.

     Regards,

         Luis

----------------------------------------------------------------------
On Tue, May 25, 2010 at 4:14 AM, Daniela Sacchetto
<danysunflower at hotmail.it> wrote:
> Hi Luis,
> Thanks a lot for your interest to my problems.
>
> My images have an independent series ID because I save them whit Matlab
> dicomwrite().....
> I think that I could solve my problem writing the DICOM header of every
> image modifying the opportune fields, can I?
> Nevertheless yesterday morning I solved it following an other way: I saved
> my slice as .jpg (Matlab saveas()) and then I used ImageSeriesReadWrite to
> have the 3D DICOM volume (including in a second time the DICOM header that I
> saved before in Matlab...).
>
> If you have some advise for me, I'm happy to learn new things
> Regards
> Daniela
>
>> Date: Mon, 24 May 2010 13:08:41 -0400
>> Subject: Re: [Insight-users] DicomSeriesReadImageWrite2_Problem to read
>> dcmSeries
>> From: luis.ibanez at kitware.com
>> To: danysunflower at hotmail.it
>> CC: insight-users at itk.org
>>
>> Hi Daniela,
>>
>> ITK will only group your DICOM slices if they belong
>> to the same Series.
>>
>> It general, it would be incorrect to group together two
>> or more DICOM images from different series.
>>
>> Can you please explain why is that each one of your
>> slices has an independent series ID ?
>>
>>
>> Thanks,
>>
>>
>> Luis
>>
>>
>>
>>
>> ------------------------------------------
>> On Wed, May 19, 2010 at 5:59 AM, Daniela Sacchetto
>> <danysunflower at hotmail.it> wrote:
>> > Hi everyone!
>> >
>> > I've a problem with DicomSeriesReadImageWrite2.
>> > I've to read 98 .dcm US images and then save them as an only .dcm 3D
>> > image....
>> > I'm trying to use DicomSeriesReadImageWrite2 but I've a strange result:
>> > my
>> > output image is made by only a frame!!!
>> >
>> > I think that my program read every .dcm image as a DicomSeries and so it
>> > works only with the first...
>> >
>> > In fact the output on my code is:
>> >
>> > ---------------------------------------------------------------------------------------
>> > The directory:
>> >
>> > ./ImagesSeries/
>> >
>> > Contains the following DICOM Series:
>> >
>> > 1.3.6.1.4.1.9590.100.1.1.10361484212757612641150690902115007521221242
>> > 1.3.6.1.4.1.9590.100.1.1.104958578313032336937390375850004964647.221242
>> > 1.3.6.1.4.1.9590.100.1.1.107405759313013746441001957330139037556.221242
>> > 1.3.6.1.4.1.9590.100.1.1.111061796311836621214237815451365526665.221242
>> > 1.3.6.1.4.1.9590.100.1.1.111371510912184596024463174462076619397.221242
>> > 1.3.6.1.4.1.9590.100.1.1.114003144113582087342408426350632299768.221242
>> > 1.3.6.1.4.1.9590.100.1.1.115069668012691176838860860252871104986.221242
>> > 1.3.6.1.4.1.9590.100.1.1.115863632711534221931101822980911990082.221242
>> > 1.3.6.1.4.1.9590.100.1.1.117210875213699775925905320144009158488.221242
>> > 1.3.6.1.4.1.9590.100.1.1.119305551712024551424636647733186827561.221242
>> > 1.3.6.1.4.1.9590.100.1.1.124756438512135209838077715403133762381.221242
>> > 1.3.6.1.4.1.9590.100.1.1.127100014912702946822219170800611195259.221242
>> > 1.3.6.1.4.1.9590.100.1.1.130904613712586655706082561633711854708.221242
>> > 1.3.6.1.4.1.9590.100.1.1.132789141911144680733439794193524860925.221242
>> > 1.3.6.1.4.1.9590.100.1.1.135448922813903449706317500221925740393.221242
>> > 1.3.6.1.4.1.9590.100.1.1.140381627611042300039716387174096495155.221242
>> > 1.3.6.1.4.1.9590.100.1.1.144532218413535004936604791574275013149.221242
>> > 1.3.6.1.4.1.9590.100.1.1.157221514712861930036266622811496897297.221242
>> > 1.3.6.1.4.1.9590.100.1.1.160223257112208121623193527622719890831.221242
>> > 1.3.6.1.4.1.9590.100.1.1.160403179611467061711348435733606596103.221242
>> > 1.3.6.1.4.1.9590.100.1.1.172713343612953281742615330863275523053.221242
>> > 1.3.6.1.4.1.9590.100.1.1.175656151313701326233705860102033370194.221242
>> > 1.3.6.1.4.1.9590.100.1.1.178274724111426279710183141672223558981.221242
>> > 1.3.6.1.4.1.9590.100.1.1.180637138611113043422500405051890976544.221242
>> > 1.3.6.1.4.1.9590.100.1.1.186730282911486077401357512971164367217.221242
>> > 1.3.6.1.4.1.9590.100.1.1.192259075012690719635674136851855041374.221242
>> > 1.3.6.1.4.1.9590.100.1.1.192304153912250864228390368121983284957.221242
>> > 1.3.6.1.4.1.9590.100.1.1.193484500413409104135181974303210120179.221242
>> > 1.3.6.1.4.1.9590.100.1.1.19483900012924771942041919211865262431221242
>> > 1.3.6.1.4.1.9590.100.1.1.195657872811850247602202149461524783890.221242
>> > 1.3.6.1.4.1.9590.100.1.1.201049653713350628538356901603932718942.221242
>> > 1.3.6.1.4.1.9590.100.1.1.205015200010636842101619262860733417343.221242
>> > 1.3.6.1.4.1.9590.100.1.1.205613602911200829614883654510244679940.221242
>> > 1.3.6.1.4.1.9590.100.1.1.20800626711899110105604105073231958255221242
>> > 1.3.6.1.4.1.9590.100.1.1.20872103812615579508486015223976135878221242
>> > 1.3.6.1.4.1.9590.100.1.1.21351735211271066209877047511394413712221242
>> > 1.3.6.1.4.1.9590.100.1.1.21680937212595594016257117591281029470221242
>> > 1.3.6.1.4.1.9590.100.1.1.224333664511635846134767287320129334367.221242
>> > 1.3.6.1.4.1.9590.100.1.1.233908953312421664220188089821972073086.221242
>> > 1.3.6.1.4.1.9590.100.1.1.234209099110527561139912938521609936297.221242
>> > 1.3.6.1.4.1.9590.100.1.1.23802820312794295127113987993421697158221242
>> > 1.3.6.1.4.1.9590.100.1.1.242833846613601180335659779954189495520.221242
>> > 1.3.6.1.4.1.9590.100.1.1.253032502011790636131304298292828389497.221242
>> > 1.3.6.1.4.1.9590.100.1.1.255281180411326795728207781183439084004.221242
>> > 1.3.6.1.4.1.9590.100.1.1.255989415911509155724838153234090034564.221242
>> > 1.3.6.1.4.1.9590.100.1.1.256703548713845188826113524501483688262.221242
>> > 1.3.6.1.4.1.9590.100.1.1.261066150512413035806047720024185285532.221242
>> > 1.3.6.1.4.1.9590.100.1.1.261923240410862384217601248181510658931.221242
>> > 1.3.6.1.4.1.9590.100.1.1.268721950512337394906243140334041866289.221242
>> > 1.3.6.1.4.1.9590.100.1.1.27002773911574612438101769393252839446221242
>> > 1.3.6.1.4.1.9590.100.1.1.271581633012520598328179585500147639169.221242
>> > 1.3.6.1.4.1.9590.100.1.1.275217719912817877728213459731407722928.221242
>> > 1.3.6.1.4.1.9590.100.1.1.277517900612931292311799848252902738566.221242
>> > 1.3.6.1.4.1.9590.100.1.1.284480680412612910037758074081229817663.221242
>> > 1.3.6.1.4.1.9590.100.1.1.286439761413969307524261925414149551332.221242
>> > 1.3.6.1.4.1.9590.100.1.1.291305712911989507105097837000895920840.221242
>> > 1.3.6.1.4.1.9590.100.1.1.292869497411583926927243992940115011216.221242
>> > 1.3.6.1.4.1.9590.100.1.1.294272493213528938332167299922951678306.221242
>> > 1.3.6.1.4.1.9590.100.1.1.295432048011872899929460473813532438228.221242
>> > 1.3.6.1.4.1.9590.100.1.1.296186631012571024433067314041707054768.221242
>> > 1.3.6.1.4.1.9590.100.1.1.301593916812146160820025722003626446068.221242
>> > 1.3.6.1.4.1.9590.100.1.1.308036880011475464222555219482749565972.221242
>> > 1.3.6.1.4.1.9590.100.1.1.309762793512585698333933743481155409607.221242
>> > 1.3.6.1.4.1.9590.100.1.1.31537236411798195029682792212183975425221242
>> > 1.3.6.1.4.1.9590.100.1.1.316724547212924806432666494890264926722.221242
>> > 1.3.6.1.4.1.9590.100.1.1.321890438512454846731899933613141156877.221242
>> > 1.3.6.1.4.1.9590.100.1.1.32608800911307637908833860023208140871221242
>> > 1.3.6.1.4.1.9590.100.1.1.332825116910498149003315061000401502685.221242
>> > 1.3.6.1.4.1.9590.100.1.1.336289553512762651720507229901428345498.221242
>> > 1.3.6.1.4.1.9590.100.1.1.336498562011885684504085922651903352995.221242
>> > 1.3.6.1.4.1.9590.100.1.1.346951755412774716126274441202286286506.221242
>> > 1.3.6.1.4.1.9590.100.1.1.350189582912575955717799599530933104099.221242
>> > 1.3.6.1.4.1.9590.100.1.1.36458300412833472603234234072687996430221242
>> > 1.3.6.1.4.1.9590.100.1.1.365342754013142409717392864100025245812.221242
>> > 1.3.6.1.4.1.9590.100.1.1.367343886412836272303768116671237967763.221242
>> > 1.3.6.1.4.1.9590.100.1.1.371453199410330370402071443502446155721.221242
>> > 1.3.6.1.4.1.9590.100.1.1.376711282912854756030326803280901027039.221242
>> > 1.3.6.1.4.1.9590.100.1.1.377409676713311240436009094542889703106.221242
>> > 1.3.6.1.4.1.9590.100.1.1.389316412613417667100401875470402172002.221242
>> > 1.3.6.1.4.1.9590.100.1.1.39465802511786504535533684932439600436221242
>> > 1.3.6.1.4.1.9590.100.1.1.395125695510859653039905120523042226302.221242
>> > 1.3.6.1.4.1.9590.100.1.1.398528795512731655934044154101725060478.221242
>> > 1.3.6.1.4.1.9590.100.1.1.410277870513038087706950595972147283218.221242
>> > 1.3.6.1.4.1.9590.100.1.1.412045646513052985524670655310954839349.221242
>> > 1.3.6.1.4.1.9590.100.1.1.416208511312424332830102614362027638482.221242
>> > 1.3.6.1.4.1.9590.100.1.1.42342430811558317805782007453092171394221242
>> > 1.3.6.1.4.1.9590.100.1.1.426127881212301683408269948334199655738.221242
>> > 1.3.6.1.4.1.9590.100.1.1.49241483711184470737460394433295304743221242
>> > 1.3.6.1.4.1.9590.100.1.1.49455742810565594637753660210668519682221242
>> > 1.3.6.1.4.1.9590.100.1.1.51443036613822244201683465584071455387221242
>> > 1.3.6.1.4.1.9590.100.1.1.51826236110766102523378438471747952106221242
>> > 1.3.6.1.4.1.9590.100.1.1.54586938712268267527783315552319051980221242
>> > 1.3.6.1.4.1.9590.100.1.1.55004693210536392229810791901280914507221242
>> > 1.3.6.1.4.1.9590.100.1.1.56593996213466745216522111193927304370221242
>> > 1.3.6.1.4.1.9590.100.1.1.60877224411871371822157485202711878743221242
>> > 1.3.6.1.4.1.9590.100.1.1.64322360612199230734233860122330178898221242
>> > 1.3.6.1.4.1.9590.100.1.1.66401018112950258816371047714219464939221242
>> > 1.3.6.1.4.1.9590.100.1.1.89578728812936033115031064410795050582221242
>> >
>> >
>> > Now reading series:
>> >
>> > 1.3.6.1.4.1.9590.100.1.1.10361484212757612641150690902115007521221242
>> >
>> >
>> > Writing the image as
>> >
>> > out2.dcm
>> >
>> > ---------------------------------------------------------------------------------------------------------------
>> >
>> > How can I say to my program that all the 98 dcm image are ''my series''?
>> > I saved the 98 frames in a new fold ''ImagesSeries'' and I pass that
>> > directory to my program....
>> >
>> >
>> > Thanks everyone
>> > Daniela
>> >
>> >
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