[Insight-users] ItkFileReader crashes for ITK 3.20 on Windows 7 with vs 2008
Dženan Zukić
dzenanz at gmail.com
Sat Sep 4 02:36:53 EDT 2010
It might be relate to this bug:
http://public.kitware.com/Bug/view.php?id=10776
<http://public.kitware.com/Bug/view.php?id=10776>Regards,
Dženan
On Sat, Sep 4, 2010 at 03:51, Emma Ryan <eryanvtk at yahoo.com> wrote:
> Hello All,
>
> I would appreciate a little help in understanding the odd behavior of
> ITK read and write functions.
> The following program works fine in release mode, but crashes in debug mode
> with a 'read access violation'.
>
> If however, I use Input and OutputPixelTypes as 'char' instead of 'unsigned
> char', it crashes in both release and debug mode.
>
> My input to the program is image.jpg. Any debugging suggestions for access
> violations are welcome too.
>
> Thank you,
> Emma
>
> #include "itkImage.h"
> #include "itkImageFileReader.h"
> #include "itkImageFileWriter.h"
>
> int main( int argc, char * argv[] )
> {
> if( argc < 3 )
> {
> std::cerr << "Usage: " << argv[0];
> std::cerr << " inputImageFile outputImageFile ";
> std::cerr << std::endl;
> return EXIT_FAILURE;
> }
>
> typedef unsigned char InputPixelType;
> typedef unsigned char OutputPixelType;
>
> typedef itk::Image< InputPixelType, 2 > InputImageType;
> typedef itk::Image< OutputPixelType, 2 > OutputImageType;
>
> typedef itk::ImageFileReader< InputImageType > ReaderType;
>
> typedef itk::ImageFileWriter< OutputImageType > WriterType;
>
> ReaderType::Pointer reader = ReaderType::New();
>
> WriterType::Pointer writer = WriterType::New();
>
> reader->SetFileName( argv[1] );
> reader->Update();
>
> writer->SetFileName( argv[2] );
> writer->SetInput( reader->GetOutput());
> writer->Update();
>
> return EXIT_SUCCESS;
> }
>
>
>
>
> ------------------------------
> *From:* "insight-users-request at itk.org" <insight-users-request at itk.org>
> *To:* insight-users at itk.org
> *Sent:* Thu, September 2, 2010 7:58:03 AM
> *Subject:* Insight-users Digest, Vol 77, Issue 5
>
> Send Insight-users mailing list submissions to
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> Today's Topics:
>
> 1. Build error - itk 3.20, gdcm 2.0.[15+] under mingw (Markus Neuner)
> 2. Image assignment does not work (D?enan Zuki?)
> 3. Re: Image assignment does not work (wanlin)
> 4. Re: Image assignment does not work (Matt McCormick)
> 5. Re: Image assignment does not work (D?enan Zuki?)
> 6. Re: Build error - itk 3.20, gdcm 2.0.[15+] under mingw
> (Bill Lorensen)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Thu, 02 Sep 2010 14:10:42 +0200
> From: "Markus Neuner" <neuner.markus at gmx.net>
> Subject: [Insight-users] Build error - itk 3.20, gdcm 2.0.[15+] under
> mingw
> To: insight-users at itk.org
> Message-ID: <20100902121042.64950 at gmx.net>
> Content-Type: text/plain; charset="utf-8"
>
> Hi,
>
> i get a linker error when building gdcm 2.0.15 or greater with itk 3.20
> with mingw under windows xp:
>
> ---- SNIP ----
> Scanning dependencies of target itkTestDriver
> [ 96%] Building CXX object
> Code/IO/CMakeFiles/itkTestDriver.dir/itkTestDriver.obj
> Linking CXX executable ..\..\bin\itkTestDriver.exe
> c:/mingw/bin/../lib/gcc/mingw32/4.4.0/../../../../mingw32/bin/ld.exe:
> cannot find -lgdcmMSFF
> collect2: ld gab 1 als Ende-Status zur?ck
> mingw32-make[2]: *** [bin/itkTestDriver.exe] Error 1
> mingw32-make[1]: *** [Code/IO/CMakeFiles/itkTestDriver.dir/all] Error 2
> mingw32-make: *** [all] Error 2
> ---- SNAP ----
>
> Bilding with gdcm 2.0.14 works fine without any issues.
>
> gdcm and itk are configured without any changes to teh standard cmake
> configurations insted of: ITK_USE_SYSTEM_GDCM=ON and the correct GDCM_DIR.
>
> To put the gscm-build/bin on the path does not solve the problem.
>
> Greetings,
> Markus
>
> Additional informations:
> MinGW versions used:
> binutils-2.20.51-1-mingw32-bin.tar.lzma
> gcc-c++-4.4.0-mingw32-bin.tar.gz
> gcc-c++-4.4.0-mingw32-dll.tar.gz
> gcc-core-4.4.0-mingw32-bin.tar.gz
> gcc-core-4.4.0-mingw32-dll.tar.gz
> gdb-7.1-2-mingw32-bin.tar.gz
> gmp-5.0.1-1-mingw32-dev.tar.lzma
> libexpat-2.0.1-1-mingw32-dll-1.tar.gz
> libgmp-5.0.1-1-mingw32-dll-10.tar.lzma
> libgomp-4.5.0-1-mingw32-dll-1.tar.lzma
> libmpc-0.8.1-1-mingw32-dll-2.tar.lzma
> libmpfr-2.4.1-1-mingw32-dll-1.tar.lzma
> libpthread-2.8.0-3-mingw32-dll-2.tar.lzma
> libssp-4.5.0-1-mingw32-dll-0.tar.lzma
> libstdc++-4.5.0-1-mingw32-dll-6.tar.lzma
> mingw-utils-0.4-1-mingw32-bin.tar.lzma
> mingw32-make-3.81-20090910.tar.gz
> mingwrt-3.18-mingw32-dev.tar.gz
> mingwrt-3.18-mingw32-dll.tar.gz
> mpc-0.8.1-1-mingw32-dev.tar.lzma
> mpfr-2.4.1-1-mingw32-dev.tar.lzma
> pthreads-w32-2.8.0-3-mingw32-dev.tar.lzma
> w32api-3.15-1-mingw32-dev.tar.lzma
> --
> GMX DSL SOMMER-SPECIAL: Surf & Phone Flat 16.000 f?r nur 19,99
> €/mtl.!*
> http://portal.gmx.net/de/go/dsl
>
>
> ------------------------------
>
> Message: 2
> Date: Thu, 2 Sep 2010 14:48:21 +0200
> From: D?enan Zuki? <dzenanz at gmail.com>
> Subject: [Insight-users] Image assignment does not work
> To: Insight-users <insight-users at itk.org>
> Message-ID:
> <AANLkTikeCbU4DT3BCFf9tfEnoQM3f=mQMH+zp9mxN7g_ at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Hi everyone!
>
> I have the following routine:
>
> void applyFilter(InternalImageType::Pointer image,
> itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer
> filter)
> {
> if (!checkImageLoaded())
> return;
> statusbar->showMessage("Applying filter:
> "+QString(filter->GetNameOfClass()));
> filter->SetInput( image );
> filter->Update();
> image=filter->GetOutput();
> updateVisualizing();
> resetVisualization();
> statusbar->showMessage("Ready");
> }
>
> and it is invoked like this:
>
> typedef itk::SmoothingRecursiveGaussianImageFilter < InternalImageType,
> InternalImageType> FilterType;
> FilterType::Pointer filter = FilterType::New();
> filter->SetSigmaArray(myImage->GetSpacing());
> applyFilter(myImage,
>
> (itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer)filter);
>
> However, the above code produces no effect (the image does not change).
> When
> content of "applyFilter" is copied to invocation points, it works.
>
> What am I doing wrong?
>
> Regards,
> D?enan
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>
> ------------------------------
>
> Message: 3
> Date: Thu, 2 Sep 2010 23:41:06 +1000
> From: wanlin <wanlinzhu at gmail.com>
> Subject: Re: [Insight-users] Image assignment does not work
> To: D?enan Zuki? <dzenanz at gmail.com>
> Cc: Insight-users <insight-users at itk.org>
> Message-ID:
> <AANLkTinfjqfbF37A2bWxU7xFCNLZfcKdKYn1AOPyM2m3 at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> What about
> void applyFilter(InternalImageType:
> :Pointer & image,
> itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer
> filter)
>
> image=filter->GetOutput();//here image pointer inside function has been
> changed, however, the image outside the function does not.
>
>
>
>
> 2010/9/2 D?enan Zuki? <dzenanz at gmail.com>
>
> > Hi everyone!
> >
> > I have the following routine:
> >
> > void applyFilter(InternalImageType::Pointer image,
> > itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer
> > filter)
> > {
> > if (!checkImageLoaded())
> > return;
> > statusbar->showMessage("Applying filter:
> > "+QString(filter->GetNameOfClass()));
> > filter->SetInput( image );
> > filter->Update();
> > image=filter->GetOutput();
> > updateVisualizing();
> > resetVisualization();
> > statusbar->showMessage("Ready");
> > }
> >
> > and it is invoked like this:
> >
> > typedef itk::SmoothingRecursiveGaussianImageFilter < InternalImageType,
> > InternalImageType> FilterType;
> > FilterType::Pointer filter = FilterType::New();
> > filter->SetSigmaArray(myImage->GetSpacing());
> > applyFilter(myImage,
> >
> (itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer)filter);
> >
> > However, the above code produces no effect (the image does not change).
> > When content of "applyFilter" is copied to invocation points, it works.
> >
> > What am I doing wrong?
> >
> > Regards,
> > D?enan
> >
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.html
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://www.itk.org/mailman/listinfo/insight-users
> >
> >
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>
> ------------------------------
>
> Message: 4
> Date: Thu, 2 Sep 2010 13:42:40 +0000 (UTC)
> From: Matt McCormick <matt at mmmccormick.com>
> Subject: Re: [Insight-users] Image assignment does not work
> To: insight-users at itk.org
> Message-ID: <loom.20100902T153756-236 at post.gmane.org>
> Content-Type: text/plain; charset=us-ascii
>
> Hi Dzenan,
>
> >
> > void applyFilter(InternalImageType::Pointer image,
> itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer
> filter)
>
> How about changing the signature to use references, i.e.
>
> void applyFilter(InternalImageType::Pointer& image,
> itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer&
> filter)
>
> >
> > {
> >
> > if (!checkImageLoaded())
> >
> > return;
> >
> > statusbar->showMessage("Applying filter: "+QString(filter-
> >GetNameOfClass()));
> >
> >
> > filter->SetInput( image );
> >
> > filter->Update();
> >
> > image=filter->GetOutput();
> >
> >
> > updateVisualizing();
> >
> > resetVisualization();
> >
> > statusbar->showMessage("Ready");
> >
> > }
> >
> >
> > and it is invoked like this:
> >
> >
> > typedef itk::SmoothingRecursiveGaussianImageFilter < InternalImageType,
> InternalImageType> FilterType;
> > FilterType::Pointer filter = FilterType::New();
> >
> > filter->SetSigmaArray(myImage->GetSpacing());
>
> I would not expect much of a change with such a small sigma.
>
> > applyFilter(myImage,
>
> (itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer)filter);
>
> I am surprised this cast works given the recent discussions of smart
> pointer
> casting on the ITK developers list. If there is intention to cast to base
> classes, then using raw pointers may be better.
>
> Regards,
> Matt
>
>
>
> ------------------------------
>
> Message: 5
> Date: Thu, 2 Sep 2010 16:02:50 +0200
> From: D?enan Zuki? <dzenanz at gmail.com>
> Subject: Re: [Insight-users] Image assignment does not work
> To: Matt McCormick <matt at mmmccormick.com>, wanlinzhu at gmail.com
> Cc: insight-users at itk.org
> Message-ID:
> <AANLkTikBrpYQCNe+M6sZCfHwzWVAhk8bMSvTFCCHg+Ar at mail.gmail.com>
> Content-Type: text/plain; charset="utf-8"
>
> Thanks both, that was it.
>
> D?enan
>
> How about changing the signature to use references, i.e.
> >
> > void applyFilter(InternalImageType::Pointer& image,
> > itk::ImageToImageFilter<InternalImageType,InternalImageType>::Pointer&
> > filter)
> >
> >
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>
> ------------------------------
>
> Message: 6
> Date: Thu, 2 Sep 2010 10:57:56 -0400
> From: Bill Lorensen <bill.lorensen at gmail.com>
> Subject: Re: [Insight-users] Build error - itk 3.20, gdcm 2.0.[15+]
> under mingw
> To: Markus Neuner <neuner.markus at gmx.net>
> Cc: insight-users at itk.org
> Message-ID:
> <AANLkTimbn=85QhD3vuUzkE84-BAdv=gQqpk9Dh-F5j2Q at mail.gmail.com>
> Content-Type: text/plain; charset=ISO-8859-1
>
> I was getting the same error a while back. Since then I have upgraded
> to cmake 2.8.2 and I'm building against the current itk head.
>
> What version of cmake are you using?
>
> Mathieu, Has something changed since 3.20 that would fix this issue.
> Other than the move of gdcm 2 into the itk tree.
>
> Bill
>
> On Thu, Sep 2, 2010 at 8:10 AM, Markus Neuner <neuner.markus at gmx.net>
> wrote:
> > Hi,
> >
> > i get a linker error when building gdcm 2.0.15 or greater with itk 3.20
> with mingw under windows xp:
> >
> > ---- SNIP ----
> > Scanning dependencies of target itkTestDriver
> > [ 96%] Building CXX object
> Code/IO/CMakeFiles/itkTestDriver.dir/itkTestDriver.obj
> > Linking CXX executable ..\..\bin\itkTestDriver.exe
> > c:/mingw/bin/../lib/gcc/mingw32/4.4.0/../../../../mingw32/bin/ld.exe:
> cannot find -lgdcmMSFF
> > collect2: ld gab 1 als Ende-Status zur?ck
> > mingw32-make[2]: *** [bin/itkTestDriver.exe] Error 1
> > mingw32-make[1]: *** [Code/IO/CMakeFiles/itkTestDriver.dir/all] Error 2
> > mingw32-make: *** [all] Error 2
> > ---- SNAP ----
> >
> > Bilding with gdcm 2.0.14 works fine without any issues.
> >
> > gdcm and itk are configured without any changes to teh standard cmake
> configurations insted of: ITK_USE_SYSTEM_GDCM=ON and the correct GDCM_DIR.
> >
> > To put the gscm-build/bin on the path does not solve the problem.
> >
> > Greetings,
> > Markus
> >
> > Additional informations:
> > MinGW versions used:
> > binutils-2.20.51-1-mingw32-bin.tar.lzma
> > gcc-c++-4.4.0-mingw32-bin.tar.gz
> > gcc-c++-4.4.0-mingw32-dll.tar.gz
> > gcc-core-4.4.0-mingw32-bin.tar.gz
> > gcc-core-4.4.0-mingw32-dll.tar.gz
> > gdb-7.1-2-mingw32-bin.tar.gz
> > gmp-5.0.1-1-mingw32-dev.tar.lzma
> > libexpat-2.0.1-1-mingw32-dll-1.tar.gz
> > libgmp-5.0.1-1-mingw32-dll-10.tar.lzma
> > libgomp-4.5.0-1-mingw32-dll-1.tar.lzma
> > libmpc-0.8.1-1-mingw32-dll-2.tar.lzma
> > libmpfr-2.4.1-1-mingw32-dll-1.tar.lzma
> > libpthread-2.8.0-3-mingw32-dll-2.tar.lzma
> > libssp-4.5.0-1-mingw32-dll-0.tar.lzma
> > libstdc++-4.5.0-1-mingw32-dll-6.tar.lzma
> > mingw-utils-0.4-1-mingw32-bin.tar.lzma
> > mingw32-make-3.81-20090910.tar.gz
> > mingwrt-3.18-mingw32-dev.tar.gz
> > mingwrt-3.18-mingw32-dll.tar.gz
> > mpc-0.8.1-1-mingw32-dev.tar.lzma
> > mpfr-2.4.1-1-mingw32-dev.tar.lzma
> > pthreads-w32-2.8.0-3-mingw32-dev.tar.lzma
> > w32api-3.15-1-mingw32-dev.tar.lzma
> > --
> > GMX DSL SOMMER-SPECIAL: Surf & Phone Flat 16.000 f?r nur 19,99
> €/mtl.!*
> > http://portal.gmx.net/de/go/dsl
> > _____________________________________
> > Powered by www.kitware.com
> >
> > Visit other Kitware open-source projects at
> > http://www.kitware.com/opensource/opensource.html
> >
> > Kitware offers ITK Training Courses, for more information visit:
> > http://www.kitware.com/products/protraining.html
> >
> > Please keep messages on-topic and check the ITK FAQ at:
> > http://www.itk.org/Wiki/ITK_FAQ
> >
> > Follow this link to subscribe/unsubscribe:
> > http://www.itk.org/mailman/listinfo/insight-users
> >
>
>
> ------------------------------
>
> _______________________________________________
> Insight-users mailing list
> Insight-users at itk.org
> http://www.itk.org/mailman/listinfo/insight-users
>
>
> End of Insight-users Digest, Vol 77, Issue 5
> ********************************************
>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-users
>
>
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