[Insight-users] Problem when running wiki example ITK/Examples/IO/ImageFileReader

[Bill Lorensen]

Works for me.

Looks like none of the io factories are loaded.

On Fri, Jun 3, 2011 at 11:15 AM, Cory Quammen <cquammen at cs.unc.edu> wrote:
> When running a slightly modified version of the example at
> http://www.itk.org/Wiki/ITK/Examples/IO/ImageFileReader as
>
> ./ImageFileReader
> /Users/cquammen/dev/packages/ITK/Testing/Data/Input/cthead1.bmp
>
> I get the error:
>
> terminate called after throwing an instance of 'itk::ImageFileReaderException'
>  what():  /Users/cquammen/dev/packages/ITK/Modules/IO/Base/include/itkImageFileReader.txx:144:
>  Could not create IO object for file
> /Users/cquammen/dev/packages/ITK/Testing/Data/Input/cthead1.bmp
>  Tried to create one of the following:
>  You probably failed to set a file suffix, or
>    set the suffix to an unsupported type.
>
>
>
> The exact code I am running is:
>
> #include "itkImage.h"
> #include "itkImageFileReader.h"
>
> //#include "QuickView.h"
>
> int main(int argc, char *argv[])
> {
>  if( argc < 2 )
>    {
>    std::cerr << "Usage: " << std::endl;
>    std::cerr << argv[0] << " inputImageFile" << std::endl;
>    return EXIT_FAILURE;
>    }
>
>  typedef itk::Image< double, 2 >         ImageType;
>  typedef itk::ImageFileReader<ImageType> ReaderType;
>
>  ReaderType::Pointer reader = ReaderType::New();
>  reader->SetFileName(argv[1]);
>  reader->Update();
>
>  //QuickView viewer;
>  //viewer.AddImage<ImageType>(reader->GetOutput());
>  //viewer.Visualize();
>
>  return EXIT_SUCCESS;
> }
>
>
>
> I am compiling the example against a recent git repository version of ITK:
>
> commit cd5aba8402fe36654fb457e23a3161fc2fd3a1eb
> Merge: 723e12d 213d010
> Author: Brad King <brad.king at kitware.com>
> Date:   Wed Jun 1 13:01:11 2011 -0400
>
> System: Mac OS X 10.6.6
> Compiler:
> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5664)
> Copyright (C) 2007 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions.  There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
>
>
> I've compiled ITK with the following non-default options:
>
> BUILD_TESTING=OFF
> CMAKE_BUILD_TYPE=Debug
> ITK_BUILD_ALL_MODULES=ON
>
>
>
> I've set the following environment variables:
> ITK_AUTOLOAD_PATH="/Users/cquammen/dev/build/ITK-Git-IO-Test/lib/"
> DYLD_LIBRARY_PATH="/Users/cquammen/dev/build/ITK-Git-IO-Test/lib/"
>
>
>
> ls -1 $ITK_AUTOLOAD_PATH yields
>
> cmake
> libITK-BiasCorrection-4.0.a
> libITK-BioCell-4.0.a
> libITK-Blox-4.0.a
> libITK-Common-4.0.a
> libITK-Deprecated-4.0.a
> libITK-FEM-4.0.a
> libITK-FFT-4.0.a
> libITK-IO-BMP-4.0.a
> libITK-IO-Base-4.0.a
> libITK-IO-BioRad-4.0.a
> libITK-IO-GDCM-4.0.a
> libITK-IO-GE-4.0.a
> libITK-IO-GIPL-4.0.a
> libITK-IO-HDF5-4.0.a
> libITK-IO-IPL-4.0.a
> libITK-IO-JPEG-4.0.a
> libITK-IO-LSM-4.0.a
> libITK-IO-Meta-4.0.a
> libITK-IO-NIFTI-4.0.a
> libITK-IO-NRRD-4.0.a
> libITK-IO-PNG-4.0.a
> libITK-IO-Siemens-4.0.a
> libITK-IO-SpatialObjects-4.0.a
> libITK-IO-Stimulate-4.0.a
> libITK-IO-TIFF-4.0.a
> libITK-IO-VTK-4.0.a
> libITK-IO-XML-4.0.a
> libITK-KLMRegionGrowing-4.0.a
> libITK-Mesh-4.0.a
> libITK-Optimizers-4.0.a
> libITK-Path-4.0.a
> libITK-Polynomials-4.0.a
> libITK-QuadEdgeMesh-4.0.a
> libITK-Review-4.0.a
> libITK-SpatialObjects-4.0.a
> libITK-Statistics-4.0.a
> libITK-Transform-4.0.a
> libITK-VNLInstantiation-4.0.a
> libITK-VTK-4.0.a
> libITK-Watersheds-4.0.a
> libITKDICOMParser-4.0.a
> libITKEXPAT-4.0.a
> libITKMetaIO-4.0.a
> libITKNrrdIO-4.0.a
> libITKniftiio-4.0.a
> libITKznz-4.0.a
> libitkNetlibSlatec-4.0.a
> libitkgdcmCommon-4.0.a
> libitkgdcmDICT-4.0.a
> libitkgdcmDSED-4.0.a
> libitkgdcmIOD-4.0.a
> libitkgdcmMSFF-4.0.a
> libitkgdcmjpeg12-4.0.a
> libitkgdcmjpeg16-4.0.a
> libitkgdcmjpeg8-4.0.a
> libitkgdcmuuid-4.0.a
> libitkhdf5-4.0.a
> libitkhdf5_cpp-4.0.a
> libitkjpeg-4.0.a
> libitkopenjpeg-4.0.a
> libitkpng-4.0.a
> libitksys-4.0.a
> libitktestlib-4.0.a
> libitktiff-4.0.a
> libitkv3p_lsqr-4.0.a
> libitkv3p_netlib-4.0.a
> libitkvcl-4.0.a
> libitkvnl-4.0.a
> libitkvnl_algo-4.0.a
> libitkzlib-4.0.a
>
>
> This should be a piece of cake to get to run. What am I missing?
>
> By the way, in a different build of the same ITK source file with
> BUILD_TESTING on, ITK tests that read images work fine, so I am
> stymied.
>
> Cory
>
> --
> Cory Quammen
> Computer Integrated Systems for Microscopy and Manipulation (CISMM)
> Department of Computer Science
> University of North Carolina at Chapel Hill
> http://www.cs.unc.edu/~cquammen
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-users
>