[Insight-users] Problem when running wiki example ITK/Examples/IO/ImageFileReader

Fri Jun 3 16:42:54 EDT 2011

Ok, still doesn't work. I've tried both static and shared builds.

On Fri, Jun 3, 2011 at 4:18 PM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
> You need not set ITK_AUTOLOAD_PATH.
>
> On Fri, Jun 3, 2011 at 11:46 AM, Cory Quammen <cquammen at cs.unc.edu> wrote:
>> Bill,
>>
>> Thanks for trying it.
>>
>> Am I missing anything obvious?
>>
>> I've got ITK_AUTOLOAD_PATH set, and DYLD_LIBRARY_PATH set for good
>> measure. Adding the library directory to PATH doesn't help.
>>
>> If I've got all the bases covered, I'll delve deeper to try to figure
>> out why the libraries aren't loading.
>>
>> Thanks,
>> Cory
>>
>> On Fri, Jun 3, 2011 at 11:42 AM, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>> Works for me.
>>>
>>> Looks like none of the io factories are loaded.
>>>
>>> On Fri, Jun 3, 2011 at 11:15 AM, Cory Quammen <cquammen at cs.unc.edu> wrote:
>>>> When running a slightly modified version of the example at
>>>> http://www.itk.org/Wiki/ITK/Examples/IO/ImageFileReader as
>>>>
>>>> ./ImageFileReader
>>>> /Users/cquammen/dev/packages/ITK/Testing/Data/Input/cthead1.bmp
>>>>
>>>> I get the error:
>>>>
>>>> terminate called after throwing an instance of 'itk::ImageFileReaderException'
>>>>  what():  /Users/cquammen/dev/packages/ITK/Modules/IO/Base/include/itkImageFileReader.txx:144:
>>>>  Could not create IO object for file
>>>> /Users/cquammen/dev/packages/ITK/Testing/Data/Input/cthead1.bmp
>>>>  Tried to create one of the following:
>>>>  You probably failed to set a file suffix, or
>>>>    set the suffix to an unsupported type.
>>>>
>>>>
>>>>
>>>> The exact code I am running is:
>>>>
>>>> #include "itkImage.h"
>>>> #include "itkImageFileReader.h"
>>>>
>>>> //#include "QuickView.h"
>>>>
>>>> int main(int argc, char *argv[])
>>>> {
>>>>  if( argc < 2 )
>>>>    {
>>>>    std::cerr << "Usage: " << std::endl;
>>>>    std::cerr << argv[0] << " inputImageFile" << std::endl;
>>>>    return EXIT_FAILURE;
>>>>    }
>>>>
>>>>  typedef itk::Image< double, 2 >         ImageType;
>>>>  typedef itk::ImageFileReader<ImageType> ReaderType;
>>>>
>>>>  ReaderType::Pointer reader = ReaderType::New();
>>>>  reader->SetFileName(argv[1]);
>>>>  reader->Update();
>>>>
>>>>  //QuickView viewer;
>>>>  //viewer.AddImage<ImageType>(reader->GetOutput());
>>>>  //viewer.Visualize();
>>>>
>>>>  return EXIT_SUCCESS;
>>>> }
>>>>
>>>>
>>>>
>>>> I am compiling the example against a recent git repository version of ITK:
>>>>
>>>> commit cd5aba8402fe36654fb457e23a3161fc2fd3a1eb
>>>> Merge: 723e12d 213d010
>>>> Author: Brad King <brad.king at kitware.com>
>>>> Date:   Wed Jun 1 13:01:11 2011 -0400
>>>>
>>>> System: Mac OS X 10.6.6
>>>> Compiler:
>>>> i686-apple-darwin10-gcc-4.2.1 (GCC) 4.2.1 (Apple Inc. build 5664)
>>>> Copyright (C) 2007 Free Software Foundation, Inc.
>>>> This is free software; see the source for copying conditions.  There is NO
>>>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>>>>
>>>>
>>>>
>>>> I've compiled ITK with the following non-default options:
>>>>
>>>> BUILD_TESTING=OFF
>>>> CMAKE_BUILD_TYPE=Debug
>>>> ITK_BUILD_ALL_MODULES=ON
>>>>
>>>>
>>>>
>>>> I've set the following environment variables:
>>>> ITK_AUTOLOAD_PATH="/Users/cquammen/dev/build/ITK-Git-IO-Test/lib/"
>>>> DYLD_LIBRARY_PATH="/Users/cquammen/dev/build/ITK-Git-IO-Test/lib/"
>>>>
>>>>
>>>>
>>>> ls -1 $ITK_AUTOLOAD_PATH yields
>>>>
>>>> cmake
>>>> libITK-BiasCorrection-4.0.a
>>>> libITK-BioCell-4.0.a
>>>> libITK-Blox-4.0.a
>>>> libITK-Common-4.0.a
>>>> libITK-Deprecated-4.0.a
>>>> libITK-FEM-4.0.a
>>>> libITK-FFT-4.0.a
>>>> libITK-IO-BMP-4.0.a
>>>> libITK-IO-Base-4.0.a
>>>> libITK-IO-BioRad-4.0.a
>>>> libITK-IO-GDCM-4.0.a
>>>> libITK-IO-GE-4.0.a
>>>> libITK-IO-GIPL-4.0.a
>>>> libITK-IO-HDF5-4.0.a
>>>> libITK-IO-IPL-4.0.a
>>>> libITK-IO-JPEG-4.0.a
>>>> libITK-IO-LSM-4.0.a
>>>> libITK-IO-Meta-4.0.a
>>>> libITK-IO-NIFTI-4.0.a
>>>> libITK-IO-NRRD-4.0.a
>>>> libITK-IO-PNG-4.0.a
>>>> libITK-IO-Siemens-4.0.a
>>>> libITK-IO-SpatialObjects-4.0.a
>>>> libITK-IO-Stimulate-4.0.a
>>>> libITK-IO-TIFF-4.0.a
>>>> libITK-IO-VTK-4.0.a
>>>> libITK-IO-XML-4.0.a
>>>> libITK-KLMRegionGrowing-4.0.a
>>>> libITK-Mesh-4.0.a
>>>> libITK-Optimizers-4.0.a
>>>> libITK-Path-4.0.a
>>>> libITK-Polynomials-4.0.a
>>>> libITK-QuadEdgeMesh-4.0.a
>>>> libITK-Review-4.0.a
>>>> libITK-SpatialObjects-4.0.a
>>>> libITK-Statistics-4.0.a
>>>> libITK-Transform-4.0.a
>>>> libITK-VNLInstantiation-4.0.a
>>>> libITK-VTK-4.0.a
>>>> libITK-Watersheds-4.0.a
>>>> libITKDICOMParser-4.0.a
>>>> libITKEXPAT-4.0.a
>>>> libITKMetaIO-4.0.a
>>>> libITKNrrdIO-4.0.a
>>>> libITKniftiio-4.0.a
>>>> libITKznz-4.0.a
>>>> libitkNetlibSlatec-4.0.a
>>>> libitkgdcmCommon-4.0.a
>>>> libitkgdcmDICT-4.0.a
>>>> libitkgdcmDSED-4.0.a
>>>> libitkgdcmIOD-4.0.a
>>>> libitkgdcmMSFF-4.0.a
>>>> libitkgdcmjpeg12-4.0.a
>>>> libitkgdcmjpeg16-4.0.a
>>>> libitkgdcmjpeg8-4.0.a
>>>> libitkgdcmuuid-4.0.a
>>>> libitkhdf5-4.0.a
>>>> libitkhdf5_cpp-4.0.a
>>>> libitkjpeg-4.0.a
>>>> libitkopenjpeg-4.0.a
>>>> libitkpng-4.0.a
>>>> libitksys-4.0.a
>>>> libitktestlib-4.0.a
>>>> libitktiff-4.0.a
>>>> libitkv3p_lsqr-4.0.a
>>>> libitkv3p_netlib-4.0.a
>>>> libitkvcl-4.0.a
>>>> libitkvnl-4.0.a
>>>> libitkvnl_algo-4.0.a
>>>> libitkzlib-4.0.a
>>>>
>>>>
>>>> This should be a piece of cake to get to run. What am I missing?
>>>>
>>>> By the way, in a different build of the same ITK source file with
>>>> BUILD_TESTING on, ITK tests that read images work fine, so I am
>>>> stymied.
>>>>
>>>> Cory
>>>>
>>>> --
>>>> Cory Quammen
>>>> Computer Integrated Systems for Microscopy and Manipulation (CISMM)
>>>> Department of Computer Science
>>>> University of North Carolina at Chapel Hill
>>>> http://www.cs.unc.edu/~cquammen
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>>>
>>
>>
>>
>> --
>> Cory Quammen
>> Computer Integrated Systems for Microscopy and Manipulation (CISMM)
>> Department of Computer Science
>> University of North Carolina at Chapel Hill
>> http://www.cs.unc.edu/~cquammen
>>
>

-- 
Cory Quammen
Computer Integrated Systems for Microscopy and Manipulation (CISMM)
Department of Computer Science
University of North Carolina at Chapel Hill
http://www.cs.unc.edu/~cquammen