[Insight-users] VNL 1.14 and ITK 3.20

Thu May 26 10:23:08 EDT 2011

Sure, but I don't know how to do that...

On Thu, May 26, 2011 at 10:18 AM, Johnson, Hans J
<hans-johnson at uiowa.edu> wrote:
> Bill,
>
> Can we get your patch incorporated into ITKv3?
>
> Thanks,
> Hans
>
> --
> Hans J. Johnson, Ph.D.
> hans-johnson at uiowa.edu
> Assistant Professor of Psychiatry
> University of Iowa Carver College of Medicine
> W278 GH, 200 Hawkins Drive
>
> Iowa City, Iowa 52242
> Phone:  319-353-8587
>
>
>
>
>
>
>
> -----Original Message-----
> From: Estanislao Oubel <stan.oubel at gmail.com>
> Date: Thu, 26 May 2011 16:12:31 +0200
> To: Bill Lorensen <bill.lorensen at gmail.com>
> Cc: <insight-users at itk.org>
> Subject: Re: [Insight-users] VNL 1.14 and ITK 3.20
>
> yes it works ! thanks !
>
>
> Le 26/05/2011 14:22, Bill Lorensen a écrit :
>> Not in ITK3.20.
>>
>> Did my fix work?
>>
>> On Thu, May 26, 2011 at 4:03 AM, francois rousseau<rousseau at unistra.fr>
>>wrote:
>>
>>> Would it be possible to avoid the compilation of the FEM module ?
>>>
>>> françois
>>>
>>>
>>> On May 24, 2011, at 4:25 PM, Bill Lorensen wrote:
>>>
>>>
>>>> The VXL folks made a non backward-compatible change to their API. The
>>>> following change has been made in ITKv4, but not ITK3.20.
>>>>
>>>>
>>>> In itkFEMLinearSystemWrapperVNL.cxx
>>>> go to the error line and replace it with the following:
>>>>
>>>> #if VXL_VERSION_MAJOR == 1&&  VXL_VERSION_MINOR == 9
>>>> ((*m_Matrices)[LeftMatrixIndex])->mult(
>>>> *((*m_Matrices)[RightMatrixIndex]),
>>>> *((*m_Matrices)[ResultMatrixIndex]) );
>>>> #else
>>>> *((*m_Matrices)[ResultMatrixIndex]) =
>>>> *((*m_Matrices)[LeftMatrixIndex]) * (
>>>>*((*m_Matrices)[RightMatrixIndex]));
>>>> #endif
>>>>
>>>> On Tue, May 24, 2011 at 8:46 AM, Estanislao
>>>>Oubel<stan.oubel at gmail.com>  wrote:
>>>>
>>>>> Hi all,
>>>>>
>>>>> I'd like to use VNL 1.14 with ITK 3.20 because the vnl_sparse_matrix
>>>>> includes several
>>>>> useful methods absent in the VNL version included in ITK 3.20
>>>>> (sparse matrix multiplication for example)
>>>>>
>>>>> I've set ITK_USE_SYSTEM_VXL to ON but I get some compilation errors:
>>>>>
>>>>> [100%] [100%] [100%] Building CXX object
>>>>> Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/itkFEMUtility.o
>>>>> Building CXX object
>>>>> Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/itkFEMInitialization.o
>>>>> Building C object Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/dsrc2c.o
>>>>> /home/miv/oubel/lib/vxl-1.14.0/core/vnl/vnl_sparse_matrix.h: In member
>>>>> function Œvirtual void
>>>>> itk::fem::LinearSystemWrapperVNL::MultiplyMatrixMatrix(unsigned int,
>>>>> unsigned int, unsigned int)¹:
>>>>> /home/miv/oubel/lib/vxl-1.14.0/core/vnl/vnl_sparse_matrix.h:268:
>>>>>error:
>>>>> Œvoid vnl_sparse_matrix<T>::mult(const vnl_sparse_matrix<T>&,
>>>>> vnl_sparse_matrix<T>&) const [with T = double]¹ is protected
>>>>>
>>>>>/home/miv/oubel/lib/InsightToolkit-3.20.0/Code/Numerics/FEM/itkFEMLinea
>>>>>rSystemWrapperVNL.cxx:265:
>>>>> error: within this context
>>>>> make[2]: ***
>>>>>
>>>>>[Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/itkFEMLinearSystemWrapperVNL.o
>>>>>]
>>>>> Erreur 1
>>>>> make[2]: *** Attente des tâches non terminées....
>>>>> make[1]: *** [Code/Numerics/FEM/CMakeFiles/ITKFEM.dir/all] Erreur 2
>>>>> make[1]: *** Attente des tâches non terminées....
>>>>> Linking CXX shared library ../../bin/libITKIOReview.so
>>>>> [100%] Built target ITKIOReview
>>>>> Linking CXX executable ../../bin/itkTestDriver
>>>>> [100%] Built target itkTestDriver
>>>>> make: *** [all] Erreur 2
>>>>>
>>>>> Am I doing anything wrong? Have you found similar problems?
>>>>>
>>>>> Best
>>>>>
>>>>> stan
>>>>>
>>>>>
>>>>>
>>>>> _____________________________________
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>> http://www.kitware.com/products/protraining.html
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>
>>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.html
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>
>>>>
>>> --
>>> ---------------------------
>>> Francois Rousseau
>>> LSIIT
>>> Pôle API
>>> Boulevard Sébastien Brant
>>> F-67400 ILLKIRCH
>>> tel : +33 3 68 85 44 89
>>> email : rousseau at unistra.fr
>>> http://lsiit-miv.u-strasbg.fr/miv/19-ROUSSEAU-Francois.html
>>>
>>>
>>>
>
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-users
>
>
>
> ________________________________
> Notice: This UI Health Care e-mail (including attachments) is covered by the Electronic Communications Privacy Act, 18 U.S.C. 2510-2521, is confidential and may be legally privileged.  If you are not the intended recipient, you are hereby notified that any retention, dissemination, distribution, or copying of this communication is strictly prohibited.  Please reply to the sender that you have received the message in error, then delete it.  Thank you.
> ________________________________
>