[Insight-users] SimpleITK: Fatal Python error on import

Matt McCormick matt.mccormick at kitware.com
Wed Oct 19 12:52:18 EDT 2011


Hi Andriy,

Thanks for the report.  An issue can be created here:

https://itk.icts.uiowa.edu/jira/browse/SIMPLEITK

Thanks,
Matt



On Wed, Oct 19, 2011 at 12:39 PM, Andriy Fedorov
<fedorov at bwh.harvard.edu> wrote:
> Hi,
>
> I compiled SimpleITK from source, and am now trying to install it so
> that python can see the package. Maybe I am not doing it correctly,
> but I have a runtime error while trying to import the package. Any
> suggestions?
>
> My system details: OSX 10.6.8 (Snow Leopard), gcc-4.2.1, python 2.7.1.
> Python has been installed from an Enthought distribution.
>
> If I need to submit a bug report, can someone point me to the right
> location to do this? Is this regular ITK MAntis or not?
>
> [fedorov at bear site-packages] easy_install SimpleITK-0.3.0-py2.7.egg
> Processing SimpleITK-0.3.0-py2.7.egg
> Copying SimpleITK-0.3.0-py2.7.egg to
> /Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages
> Adding SimpleITK 0.3.0 to easy-install.pth file
>
> Installed /Library/Frameworks/EPD64.framework/Versions/7.0/lib/python2.7/site-packages/SimpleITK-0.3.0-py2.7.egg
> Processing dependencies for SimpleITK==0.3.0
> Finished processing dependencies for SimpleITK==0.3.0
> [fedorov at bear site-packages] ipython
> Enthought Python Distribution -- http://www.enthought.com
>
> Python 2.7.1 |EPD 7.0-2 (64-bit)| (r271:86832, Dec  3 2010, 15:56:20)
> Type "copyright", "credits" or "license" for more information.
>
> IPython 0.10.1 -- An enhanced Interactive Python.
> ?         -> Introduction and overview of IPython's features.
> %quickref -> Quick reference.
> help      -> Python's own help system.
> object?   -> Details about 'object'. ?object also works, ?? prints more.
>
> In [1]: import SimpleITK
> Fatal Python error: PyThreadState_Get: no current thread
> Abort trap
>
>
> --
> Andriy Fedorov, Ph.D.
>
> Research Fellow
> Brigham and Women's Hospital
> Harvard Medical School
> 75 Francis Street
> Boston, MA 02115 USA
> fedorov at bwh.harvard.edu
> (617) 525-6258 (office)
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