[Insight-users] Problems building python bindings for itk

Constantine Zakkaroff mnkz at leeds.ac.uk
Thu Aug 2 10:08:34 EDT 2012 

Hello ALL.

I had no success with VS2010, but VS2008 builds ITK 4.2 with Python 2.7 
after a couple attempts and after swigwin.exe is renamed to swig.exe.

However I never managed to get the wrappers up and running in Python, 
because of either some paths missing, or something else.

What's puzzling me and what I suspect is wrong is that in ITK-3.20.1 
there was bin\Release\SwigRuntimePython.dll. But I don't see this dll in 
ITK-4.2.0 build.

I'm wondering if ANYONE can shed some light on this, whether the
model/structure of wrapping has been changed in 4.2 and that .dll is not 
required any more or is it an error that it's missing or am I missing 
something? This is not the first time I'm posting this question but so 
far I had no luck.

Regards,
Constantine

> Date: Tue, 31 Jul 2012 20:25:27 +0100 (BST)
> From: Willi Huber <surfersparadise85-itk at yahoo.com>
> Subject: Re: [Insight-users] Problems building python bindings for itk
> To: douglas souza <dougnsouza at gmail.com>
> Cc: "insight-users at itk.org" <insight-users at itk.org>
> Message-ID:
>          <1343762727.43152.YahooMailNeo at web132405.mail.ird.yahoo.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Hi Douglas,
>
> I am sorry to?disappoint?you. Matthias told me that since Python 2.7 was built with VS2008 it is not possible to build itk with python support using VS2010.
> Hope this answer helps.
>
>
> Cheers,
> Willi
>
>
>
>> ________________________________
>> Von: douglas souza <dougnsouza at gmail.com>
>> An: Willi <surfersparadise85-itk at yahoo.com>
>> CC: insight-users at itk.org
>> Gesendet: 20:46 Dienstag, 31.Juli 2012
>> Betreff: Re: [Insight-users] Problems building python bindings for itk
>>
>>
>> Where you able to fix this? ?? I am strugling with the same for quite sometime.. Python 2.7.3 + Visual Studio 2010 64bits.? Same __noop that does not go away....
>> ?
>> rgds, doug
>>
>>
>> On Mon, Jul 16, 2012 at 5:28 PM, Willi <surfersparadise85-itk at yahoo.com> wrote:
>>
>> I forgot to add that since I received the error?
>>>
>>>
>>> CUSTOMBUILD : error : Could not run C:/GCCXML/bin/bin/Release/gccxml_cc1plus.exe:
>>>
>>> Der Dateiname oder die Erweiterung ist zu lang
>>>
>>>
>>> again, I compiled the actual version (that I donwloaded with CVS) of gccxml myself and installed it.
>>>
>>>
>>> I am still trying to get WrapITK working for Python 2.7 using MS Visual Studio 2010 - 64bit.?I was told that __noop comes from using the MSVC-STL with GCC so it could not get working. What am I supposed to do?
>>>
>>>
>>> Willi
>>>
>>>
>>>
>>>> ________________________________
>>>> Von: Willi <surfersparadise85-itk at yahoo.com>
>>>> An: Matthias Seise <mseise at gmail.com>
>>>> CC: "Insight-users at itk.org" <Insight-users at itk.org>
>>>> Gesendet: 22:05 Montag, 16.Juli 2012
>>>> Betreff: Re: [Insight-users] Problems building python bindings for itk
>>>>
>>>>
>>>> Hi Matthias,
>>>>
>>>>
>>>> I tried to compile it now with your patch installed and it still isn't compiling.
>>>>
>>>>
>>>> Now I am back to:
>>>> C:/Program Files/gccxml/share/gccxml-0.9/Vc10/Include/vector: In member function 'typename _Myvec::const_reference std::_Vector_const_iterator<_Myvec>::operator*() const [with _Myvec = std::_Vector_val<double, std::allocator<double> >]':
>>>> ? C:/Program Files/gccxml/share/gccxml-0.9/Vc10/Include/memory:376: ? instantiated from '_FwdIt std::_Uninit_copy(_InIt, _InIt, _FwdIt, _Alloc&, std::_Nonscalar_ptr_iterator_tag) [with _InIt = std::_Vector_const_iterator<std::_Vector_val<double, std::allocator<double> > >, _FwdIt = double*, _Alloc = std::allocator<double>]'
>>>> ? C:/Program Files/gccxml/share/gccxml-0.9/Vc10/Include/memory:414: ? instantiated from '_FwdIt std::_Uninitialized_copy(_InIt, _InIt, _FwdIt, _Alloc&) [with _InIt = std::_Vector_const_iterator<std::_Vector_val<double, std::allocator<double> > >, _FwdIt = double*, _Alloc = std::allocator<double>]'
>>>> ? C:/Program Files/gccxml/share/gccxml-0.9/Vc10/Include/vector:1318: ? instantiated from 'typename std::_Vector_val<_Ty, _Ax>::_Alty::pointer std::vector<_Ty, _Ax>::_Ucopy(_Iter, _Iter, typename std::_Vector_val<_Ty, _Ax>::_Alty::pointer) [with _Iter = std::_Vector_const_iterator<std::_Vector_val<double, std::allocator<double> > >, _Ty = double, _Ax = std::allocator<double>]'
>>>> ? C:/Program Files/gccxml/share/gccxml-0.9/Vc10/Include/vector:538: ? instantiated from 'std::vector<_Ty, _Ax>::vector(const std::vector<_Ty, _Ax>&) [with _Ty = double, _Ax = std::allocator<double>]'
>>>> ? C:/ITK/src/Modules/IO/ImageBase/include/itkImageIOBase.h:148: ? instantiated from here
>>>> ? C:/Program Files/gccxml/share/gccxml-0.9/Vc10/Include/vector:82: error: '__noop' was not declared in this scope
>>>>
>>>>
>>>> during the call:
>>>> "C:\Program Files\gccxml\bin\gccxml.exe" -fxml-start=_cable_ -fxml=C:/ITK/bin/Wrapping/Modules/ITKIOImageBase/itkImageSeriesReader.xml --gccxml-gcc-options C:/ITK/bin/Wrapping/Modules/ITKIOImageBase/gcc_xml.inc -DCSWIG -DCABLE_CONFIGURATION -DITK_MANUAL_INSTANTIATION -D"_HAS_TR1=0" C:/ITK/bin/Wrapping/Modules/ITKIOImageBase/itkImageSeriesReader.cxx
>>>>
>>>>
>>>>
>>>> You can see your switch?-D"_HAS_TR1=0"
>>>>
>>>>
>>>> I am still frustrated. Anyone else has an idea?
>>>>
>>>>
>>>> Cheers,
>>>> Willi
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>> ________________________________
>>>>> Von: Matthias Seise <mseise at gmail.com>
>>>>> An: Willi <surfersparadise85-itk at yahoo.com>
>>>>> CC: "Insight-users at itk.org" <Insight-users at itk.org>
>>>>> Gesendet: 12:17 Samstag, 14.Juli 2012
>>>>> Betreff: Re: Problems building python bindings for itk
>>>>>
>>>>> Hi Willi,
>>>>>
>>>>> sometimes there are unresolved dependncies and starting the build again
>>>>> helps...
>>>>>
>>>>> Matthias
>>>>>
>>>>> Am 14.07.2012 00:55, schrieb Willi:
>>>>>> Hi Matthias,
>>>>>>
>>>>>> thank you very much.
>>>>>> You also changed in SwigInterface/CMakeLists.txt the name of swigwin to
>>>>>> swig. This is also helpful since I had the same problem too.
>>>>>> The last remaining error looks like this:
>>>>>>
>>>>>> ------ Erstellen gestartet: Projekt: ITKAntiAliasPython, Konfiguration:
>>>>>> Release x64 ------
>>>>>> Der Buildvorgang wurde am 13.07.2012 19:57:15 gestartet.
>>>>>> InitializeBuildStatus:
>>>>>> Aktualisieren des Timestamps von
>>>>>> "ITKAntiAliasPython.dir\Release\ITKAntiAliasPython.unsuccessfulbuild".
>>>>>> CustomBuild:
>>>>>> Building Custom Rule
>>>>>>
>   C:/ITK/src/Modules/Filtering/AntiAlias/wrapping/CMakeLists.txt
>>>>>> CMake does not need to re-run because
>>>>>> C:\ITK\bin\Wrapping\Modules\ITKAntiAlias\CMakeFiles\generate.stamp is
>>>>>> up-to-date.
>>>>>> Generating itkAntiAliasBinaryImageFilter.xml
>>>>>> Generating ../../Typedefs/itkAntiAliasBinaryImageFilter.idx
>>>>>> Generating ../../Typedefs/itkAntiAliasBinaryImageFilter.i,
>>>>>> ../../Typedefs/itkAntiAliasBinaryImageFilterSwigInterface.h
>>>>>> Traceback (most recent call last):
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 560, in <module>
>>>>>> load_mdx(f)
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 319, in load_mdx
>>>>>> load_mdx(os.path.dirname(file_name)+os.sep+l.strip())
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 319, in load_mdx
>>>>>>
>   load_mdx(os.path.dirname(file_name)+os.sep+l.strip())
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 319, in load_mdx
>>>>>> load_mdx(os.path.dirname(file_name)+os.sep+l.strip())
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 319, in load_mdx
>>>>>> load_mdx(os.path.dirname(file_name)+os.sep+l.strip())
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 321, in load_mdx
>>>>>> load_idx(os.path.dirname(file_name)+os.sep+l.strip())
>>>>>> File "C:/ITK/src/Wrapping/Generators/SwigInterface/igenerator.py", line
>>>>>> 286, in load_idx
>>>>>> f = file(file_name)
>>>>>> IOError: [Errno 2] No such file or directory:
>>>>>> 'C:/ITK/bin/Wrapping/Typedefs\\ITKIOImageBaseBase.idx'
>>>>>> C:\Program Files
>>>>>> (x86)\MSBuild\Microsoft.Cpp\v4.0\Microsoft.CppCommon.targets(151,5):
>>>>>> error MSB6006: "cmd.exe" wurde mit dem Code 1
>   beendet.
>>>>>>
>>>>>> but I think this is an easy one.
>>>>>> I am going to tackle this problem tomorrow and upload the patch.
>>>>>>
>>>>>> Cheers,
>>>>>> Willi
>>>>>>
>>>>>> ? ?  ------------------------------------------------------------------------
>>>>>> ? ?  *Von:* Matthias Seise <mseise at gmail.com>
>>>>>> ? ?  *An:* surfersparadise85-itk at yahoo.com
>>>>>> ? ?  *CC:* Insight-users at itk.org
>>>>>> ? ?  *Gesendet:* 21:04 Donnerstag, 12.Juli 2012
>>>>>> ? ?  *Betreff:* RE: Problems building python bindings for itk
>>>>>>
>>>>>> ?
>   ?  Hi Willi,
>>>>>>
>>>>>> ? ?  I had the same problem with VS 2008 - you need
>   to add the gccxml
>>>>>> ? ?  flag -D"_HAS_TR1=0"
>>>>>> ? ?  I just submitted a patch for compiling wrapITK for python 2.7, 64
>>>>>> ? ?  bit (see http://review.source.kitware.com/#/c/6411/)
>>>>>>
>>>>>> ? ?  Good luck!
>>>>>>
>>>>>> ? ?  Matthias
>>>>>>
>>>>>>
>>>>>
>>>>>
>>>>>
>>>> _____________________________________
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>>>>
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>>>>
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>>>>
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>   and check the ITK FAQ at:
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>>>>
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>>>>
>>>>
>>>>
>>> _____________________________________
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>>>
>>> Visit other Kitware open-source projects at
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>>>
>>> Kitware offers ITK Training Courses, for more information visit:
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>>>
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>>
>>
>>
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