[Insight-users] SimpleITK and Python

[Christopher Wyatt]

Brad,

I tried again using the latest git repo (instead of the Sourceforge 0.3.0 release)
and added the --recursive to get the data, and all is fine now. 

Sorry for the noise.

-- chris.

On Jan 31, 2012, at 1:32 PM, Bradley Lowekamp wrote:

> Hello Chirs,
> 
> The VM for the tutorial was keep as small as possible, so the VM did not contain the testing data submodule. This issue is addressed ing the FAQ here:
> 
> http://www.vtk.org/Wiki/ITK_Release_4/SimpleITK/FAQ#Why_are_so_many_tests_failing.3F
> 
> Unfortunately, the error you are reporting is not as simple as above. Can you please tell us about your system: OS, python version, and compiler. Also please tell us how you have configured SimpleITK, and are you using the super build as described here:
> 
> http://www.vtk.org/Wiki/ITK_Release_4/SimpleITK/GettingStarted#Build_It_Yourself
> 
> Brad
> 
> On Jan 31, 2012, at 9:51 AM, Christopher Wyatt wrote:
> 
>> 
>> I have been trying to build SimpleITK and use the Python bindings but have had some issues
>> (Ubuntu Linux). All the Python tests fail. When trying to figure out the problem I noticed 
>> when using the MICCAI tutorial virtual machine that the tests fail as well.
>> 
>> After starting the VM
>> cd ~/Source/SimpleITK-build/SimpleITK-build
>> make test
>> Python. ... (Failed)
>> 
>> However when I start ipython on the VM it works fine so I think there is some Python path magic
>> I am missing. In particular I don't have a /Wrapping directory in my SimpleITK build.
>> 
>> Here is the error I get when I activate the virtualenv in 
>> ~/SimpleITK-Build/SimpleITK-build/Testing/Installation/PythonVirtualenv
>> start python and try to import SimpleITK
>> ImportError:dynamic module does not define init function (init_SimpleITK)
>> 
>> Any pointers to a solution is appreciated.
>> 
>> -- chris.
>> 
>> P.S. I would also like to take this opportunity to thank all the ITK
>> devs who worked on ITK 4 and SimpleITK.
>> 
>> 
>> 
>> 
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> 
> ========================================================
> Bradley Lowekamp  
> Medical Science and Computing for
> Office of High Performance Computing and Communications
> National Library of Medicine 
> blowekamp at mail.nih.gov
> 
> 
>