[Insight-users] QuadricDecimationQuadEdgeMeshFilter crashes

[cagatay bilgin]

Hi Arnaud,

Sorry for the late response. You can find the
output of the BinaryMash3DMeshSource here
http://vision.lbl.gov/People/bilgin/mesh.vtk.tar.gz

The code seems to run as expected with other images.
For the failing image, decimation in Paraview works fine.

Thank you,
Cagatay

On Fri, Feb 24, 2012 at 12:09 AM, Arnaud Gelas <arnaudgelas at gmail.com>wrote:

> Hi Cagatay,
>
> Thanks for reporting the error / bug.
>
> Can you save the output of the BinaryMash3DMeshSource filter and share it
> with me, please?
>
> Thanks,
> Arnaud
>
> On Wed, Feb 22, 2012 at 12:23 AM, cagatay bilgin <bilgincc at gmail.com>wrote:
>
>> Hi ITK users,
>> I am having trouble with QuadricDecimationQuadEdgeMeshFilter
>> class. Here is the code snippet I used. The program compiles
>> but crashes while running
>>
>>   typedef itk::QuadEdgeMesh< double, 3 >
>>  InputQuadMeshType;
>>   typedef itk::Vector< double, 3 >
>>  QuadVectorType;
>>
>>   //Binary image to mesh
>>   typedef itk::BinaryMask3DMeshSource< OIT, InputQuadMeshType >
>> MeshSourceType;
>>   MeshSourceType::Pointer meshSource = MeshSourceType::New();
>>   meshSource->SetObjectValue( 255 );
>>   meshSource->SetInput( thresholdFilter->GetOutput() );
>>   meshSource->Update();
>>   InputQuadMeshType::Pointer mesh = meshSource->GetOutput( );
>>   std::cout << "Initially #faces: " << mesh->GetNumberOfFaces() <<
>> std::endl;
>>
>>   //Mesh decimate
>>   typedef itk::NumberOfFacesCriterion< InputQuadMeshType > CriterionType;
>>   typedef itk::QuadricDecimationQuadEdgeMeshFilter
>>     <InputQuadMeshType, InputQuadMeshType, CriterionType > DecimationType;
>>
>>   long N=1000;
>>   CriterionType::Pointer criterion = CriterionType::New();
>>   criterion->SetTopologicalChange( true );
>>   criterion->SetNumberOfElements( N );
>>
>>   DecimationType::Pointer decimate = DecimationType::New();
>>   decimate->SetInput( mesh );
>>   decimate->SetCriterion( criterion );
>>   decimate->Update();
>>   InputQuadMeshType::Pointer decimatedMesh = decimate->GetOutput();
>>   std::cout << "Decimation # of faces: " <<
>> decimatedMesh->GetNumberOfFaces() << std::endl;
>>
>> when I do N = mesh->GetNumberOfFaces();
>> the code just works fine.
>>
>> Here is the output
>>
>> Initially #faces: 360790
>> *** glibc detected *** ./CBSRelease: double free or corruption (out):
>> 0x00007fc0e4000020 ***
>> ======= Backtrace: =========
>> /lib/x86_64-linux-gnu/libc.so.6(+0x78a96)[0x7fc14b72fa96]
>> /lib/x86_64-linux-gnu/libc.so.6(cfree+0x6c)[0x7fc14b733d7c]
>> ./CBSRelease(_ZN10vnl_matrixIfE7destroyEv+0x33)[0x86ad83]
>>
>> ./CBSRelease(_ZN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS_17QuadEdgeMeshPointIfLj3ENS_19GeometricalQuadEdgeImmbbLb1EEEEEED1Ev+0x1c)[0x6e83c8]
>>
>> ./CBSRelease(_ZNSt4pairIKmN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS1_17QuadEdgeMeshPointIfLj3ENS1_19GeometricalQuadEdgeImmbbLb1EEEEEEEED1Ev+0x1c)[0x6e4ae4]
>>
>> ./CBSRelease(_ZN9__gnu_cxx13new_allocatorISt4pairIKmN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS3_17QuadEdgeMeshPointIfLj3ENS3_19GeometricalQuadEdgeImmbbLb1EEEEEEEEE7destroyEPSA_+0x1c)[0x6e4b02]
>>
>> ./CBSRelease(_ZNSt8_Rb_treeImSt4pairIKmN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS2_17QuadEdgeMeshPointIfLj3ENS2_19GeometricalQuadEdgeImmbbLb1EEEEEEEESt10_Select1stIS9_ESt4lessImESaIS9_EE15_M_destroy_nodeEPSt13_Rb_tree_nodeIS9_E+0x46)[0x6e11dc]
>>
>> ./CBSRelease(_ZNSt8_Rb_treeImSt4pairIKmN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS2_17QuadEdgeMeshPointIfLj3ENS2_19GeometricalQuadEdgeImmbbLb1EEEEEEEESt10_Select1stIS9_ESt4lessImESaIS9_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS9_E+0x3e)[0x768840]
>>
>> ./CBSRelease(_ZNSt8_Rb_treeImSt4pairIKmN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS2_17QuadEdgeMeshPointIfLj3ENS2_19GeometricalQuadEdgeImmbbLb1EEEEEEEESt10_Select1stIS9_ESt4lessImESaIS9_EE5eraseESt17_Rb_tree_iteratorIS9_E+0x36)[0x74d20e]
>>
>> ./CBSRelease(_ZNSt3mapImN3itk42QuadEdgeMeshDecimationQuadricElementHelperINS0_17QuadEdgeMeshPointIfLj3ENS0_19GeometricalQuadEdgeImmbbLb1EEEEEEESt4lessImESaISt4pairIKmS6_EEE5eraseESt17_Rb_tree_iteratorISB_E+0x23)[0x73140f]
>>
>> ./CBSRelease(_ZN3itk35QuadricDecimationQuadEdgeMeshFilterINS_12QuadEdgeMeshIdLj3ENS_18QuadEdgeMeshTraitsIdLj3EbbffEEEES4_NS_22NumberOfFacesCriterionIS4_mdNS_30MinPriorityQueueElementWrapperIPNS_19GeometricalQuadEdgeImmbbLb1EEESt4pairIbdEmEEEEE11DeletePointERKmSG_+0x99)[0x6f9ee9]
>>
>> ./CBSRelease(_ZN3itk32EdgeDecimationQuadEdgeMeshFilterINS_12QuadEdgeMeshIdLj3ENS_18QuadEdgeMeshTraitsIdLj3EbbffEEEES4_NS_22NumberOfFacesCriterionIS4_mdNS_30MinPriorityQueueElementWrapperIPNS_19GeometricalQuadEdgeImmbbLb1EEESt4pairIbdEmEEEEE37ProcessWithoutAnyTopologicalGuaranteeEv+0x42c)[0x6f9792]
>>
>> ./CBSRelease(_ZN3itk32EdgeDecimationQuadEdgeMeshFilterINS_12QuadEdgeMeshIdLj3ENS_18QuadEdgeMeshTraitsIdLj3EbbffEEEES4_NS_22NumberOfFacesCriterionIS4_mdNS_30MinPriorityQueueElementWrapperIPNS_19GeometricalQuadEdgeImmbbLb1EEESt4pairIbdEmEEEEE31ProcessWithTopologicalGuaranteeEv+0x3b)[0x6f9ad7]
>>
>> ./CBSRelease(_ZN3itk28DecimationQuadEdgeMeshFilterINS_12QuadEdgeMeshIdLj3ENS_18QuadEdgeMeshTraitsIdLj3EbbffEEEES4_NS_22NumberOfFacesCriterionIS4_mdNS_30MinPriorityQueueElementWrapperIPNS_19GeometricalQuadEdgeImmbbLb1EEESt4pairIbdEmEEEEE12GenerateDataEv+0x98)[0x6f87be]
>>
>> ./CBSRelease(_ZN3itk13ProcessObject16UpdateOutputDataEPNS_10DataObjectE+0xc5)[0x8b6eb5]
>> ./CBSRelease(_ZN3itk13ProcessObject6UpdateEv+0x116)[0x8b4116]
>> ./CBSRelease(main+0xf8a)[0x6be89e]
>> /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xed)[0x7fc14b6d830d]
>> ./CBSRelease[0x6bd861]
>>
>>
>> Cagatay
>>
>>
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>
>
> --
> Arnaud Gelas, Ph. D.
> Avenue Beauregard 30
> CH-1700 Fribourg
> Switzerland
> cellphone: (+41) 76-635-08-66
> phone: (+41) 26-535-44-36
> arnaudgelas at gmail.com
>
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