[Insight-users] Some questions in understanding the N4ITK
Wenwu
cool.wenwu at gmail.com
Mon Jan 9 06:25:02 EST 2012
Hi everyone,
There are some problems when I learn the N4ITK. Firstly, in the
paper-"N4ITK:Nick's N3 ITK Implementation For MRI Bias Field Correction" ,
I found there are 9 parameters (m_MaskMabel, m_numberOfHistogamBins,
m_WeinerFilterNoise, m_BiasFieldFullWitdthAtHalfMaximum... ,)need to set,
it can also be found in the N4ITK package. However, in the lastest ITK4.0,
in the project-ITKBiasCorrectionTestDriver, I open the CMakeLists.txt, and
some code is as followiing:
itk_add_test(NAME itkN4BiasFieldCorrectionImageFilterTest1
COMMAND ITKBiasCorrectionTestDriver
--compare DATA{Baseline/N4ControlPoints_3D.nii.gz}
${ITK_TEST_OUTPUT_DIR}/N4ControlPoints_3D.nii.gz
itkN4BiasFieldCorrectionImageFilterTest
2
DATA{${ITK_DATA_ROOT}/Input/HeadMRVolumeCompressed.mha} #
input
${ITK_TEST_OUTPUT_DIR}//N4ControlPoints_3D.nii.gz
# *control
point lattice .* , I also can not understand the mean of this parameter
3
# shrink factor
10x10x10 #
number of iterations
none #
mask
150 #
spline distance
)
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