[Insight-users] Problems building ItkVtkGlue wrapper on ITK 3.20

[Miguel Sotaquirá]

Hi!

I've just build and installed itk 3.20 with python bindings (didn't manage
to do it using version 4.0, don't know why)... I've also installed vtk 5.8
+ python. I'm using MAC OS X 10.6.8.

Now I'm trying to build the wrappers for connecting itk with vtk and
viceversa, from the
directory.../src-itk-3.20.1/Wrapping/WrapITK/ExternalProjects/ItkVtkGlue/.
During building I get this error:

[ 83%] Building CXX object
Wrapping/CMakeFiles/_ItkVtkGluePython.dir/wrap_ItkVtkGluePythonPython.o
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_ItkVtkGluePythonPython.cxx:1401:
warning: ‘void SWIG_exception_(int, const char*)’ defined but not used
[ 91%] Building CXX object
Wrapping/CMakeFiles/_ItkVtkGluePython.dir/wrap_itkImageToVTKImageFilterPython.o
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC3_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:1815:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC3_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:1846:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL3_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:2034:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL3_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:2065:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL3_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:2350:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL3_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:2371:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL2_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:3196:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL2_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:3227:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL2_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:3512:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUL2_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:3533:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS2_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:4363:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS2_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:4394:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS3_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:4587:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS3_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:4618:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC3_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:4908:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC3_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:4929:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF3_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:5759:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF3_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:5790:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF3_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:6080:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF3_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:6101:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS2_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:7020:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS2_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:7041:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS3_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:7968:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUS3_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:7989:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF2_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:8819:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF2_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:8850:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF2_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:9140:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIF2_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:9161:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC2_GetImporter(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:9983:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC2_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:10014:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC2_Pointer_GetImporter(PyObject*,
PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:10304:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:
In function ‘PyObject*
_wrap_itkImageToVTKImageFilterIUC2_Pointer_GetOutput(PyObject*, PyObject*)’:
/Users/miguel/code/2Archive/bin-itkvtkglue-3.20.1/Wrapping/wrap_itkImageToVTKImageFilterPython.cxx:10325:
error: ‘vtkPythonGetObjectFromPointer’ was not declared in this scope
make[2]: ***
[Wrapping/CMakeFiles/_ItkVtkGluePython.dir/wrap_itkImageToVTKImageFilterPython.o]
Error 1
make[1]: *** [Wrapping/CMakeFiles/_ItkVtkGluePython.dir/all] Error 2
make: *** [all] Error 2

After checking I found that ‘vtkPythonGetObjectFromPointer’ is declared in
'vtkPythonUtil.h', which is a header already installed in my vtk 5.8
version. This header should be included in the file
'wrap_itkImageToVTKImageFilterPython.cxx', automatically generated during
the building process... However, when this file is created, for some reason
'vtkPythonUtil.h' has not been included.

Does any of you can give me some clues? Do I have to modify something in
any of the CMakeLists.txt files of the ItkVtkGlue directory? Do I need to
rebuild ITK+Python? (I hope not, since it take a loooooong!)

Thanks for any advice,
Miguel Sotaquira
PhD Student
Bioengineering Department
Politecnico di Milano
Milan (IT)
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