[Insight-users] MINC 1/2 external module

[Sean McBride]

On Fri, 23 Mar 2012 14:54:49 -0400, Vladimir S. FONOV said:

>I can't reproduce the error on my system. I've tried to add more 
>dependencies for test compilation anyway.

So I blew away my bin folder, updated to CMake 2.8.8rc1, pulled from git again (ITK and yours), and tried again, here's the verbose output:

Linking CXX executable ../../../../bin/ITKIOMINCTestDriver
cd /Volumes/Leopard/Users/sean/kitware/ITK-test-bin/Modules/External/minc/test && /Applications/CMake.app/Contents/bin/cmake -E cmake_link_script CMakeFiles/ITKIOMINCTestDriver.dir/link.txt --verbose=1
/usr/bin/c++     -Wall -Wno-long-double -Wcast-align -Wdisabled-optimization -Wextra -Wformat=2 -Winvalid-pch -Wno-format-nonliteral -Wpointer-arith -Wshadow -Wunused -Wwrite-strings -funit-at-a-time -Wno-strict-overflow -Wno-deprecated -Wno-invalid-offsetof -Woverloaded-virtual  -g -Wl,-search_paths_first -Wl,-headerpad_max_install_names    CMakeFiles/ITKIOMINCTestDriver.dir/ITKIOMINCTestDriver.cxx.o CMakeFiles/ITKIOMINCTestDriver.dir/itkMINCImageIOTest.cxx.o  -o ../../../../bin/ITKIOMINCTestDriver  -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib/gcc -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/llvm-gcc-4.2/lib -L/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2/lib ../../../../lib/libITKIOMINC-4.2.a /Volumes/Leopard/Users/sean/RogueSVNWorkingCopy1/3rdParty/NetCDF/trunk/Debug/lib/libnetcdf.a ../../../../lib/libITKIOBMP-4.2.a ../../../../lib/libITKIOBioRad-4.2.a ../../../../lib/libITKIOGDCM-4.2.a ../../../../lib/libITKIOGIPL-4.2.a ../../../../lib/libITKIOJPEG-4.2.a ../../../../lib/libITKIOLSM-4.2.a ../../../../lib/libITKIOMeta-4.2.a ../../../../lib/libITKIONIFTI-4.2.a ../../../../lib/libITKIONRRD-4.2.a ../../../../lib/libITKIOPNG-4.2.a ../../../../lib/libITKIOStimulate-4.2.a ../../../../lib/libITKIOTIFF-4.2.a ../../../../lib/libITKIOVTK-4.2.a ../../../../lib/libitksys-4.2.a /Volumes/Leopard/Users/sean/RogueSVNWorkingCopy1/3rdParty/NetCDF/trunk/Debug/lib/libnetcdf.a ../../../../lib/libITKIOBMP-4.2.a ../../../../lib/libITKIOBioRad-4.2.a ../../../../lib/libITKIOGDCM-4.2.a ../../../../lib/libITKIOGIPL-4.2.a ../../../../lib/libITKIOJPEG-4.2.a ../../../../lib/libITKIOLSM-4.2.a ../../../../lib/libITKIOMeta-4.2.a ../../../../lib/libITKIONIFTI-4.2.a ../../../../lib/libITKIONRRD-4.2.a ../../../../lib/libITKIOPNG-4.2.a ../../../../lib/libITKIOStimulate-4.2.a ../../../../lib/libITKIOTIFF-4.2.a ../../../../lib/libITKIOVTK-4.2.a ../../../../lib/libitksys-4.2.a ../../../../lib/libitkgdcmMSFF-4.2.a ../../../../lib/libitkgdcmDICT-4.2.a ../../../../lib/libitkgdcmIOD-4.2.a ../../../../lib/libitkgdcmDSED-4.2.a ../../../../lib/libitkgdcmCommon-4.2.a -framework CoreFoundation ../../../../lib/libITKEXPAT-4.2.a ../../../../lib/libitkgdcmjpeg8-4.2.a ../../../../lib/libitkgdcmjpeg12-4.2.a ../../../../lib/libitkgdcmjpeg16-4.2.a ../../../../lib/libitkopenjpeg-4.2.a ../../../../lib/libitkgdcmuuid-4.2.a ../../../../lib/libitktiff-4.2.a ../../../../lib/libitkjpeg-4.2.a ../../../../lib/libITKMetaIO-4.2.a ../../../../lib/libITKniftiio-4.2.a ../../../../lib/libITKznz-4.2.a ../../../../lib/libITKNrrdIO-4.2.a ../../../../lib/libitkpng-4.2.a ../../../../lib/libitkzlib-4.2.a ../../../../lib/libITKIOImageBase-4.2.a ../../../../lib/libITKCommon-4.2.a ../../../../lib/libitksys-4.2.a -lm ../../../../lib/libITKVNLInstantiation-4.2.a ../../../../lib/libitkvnl_algo-4.2.a ../../../../lib/libitkv3p_lsqr-4.2.a ../../../../lib/libitkvnl-4.2.a ../../../../lib/libitkvcl-4.2.a ../../../../lib/libitkv3p_netlib-4.2.a -lm 
Undefined symbols for architecture x86_64:
  "_H5Iget_type", referenced from:
      minc::minc_1_reader::open(char const*, bool, bool, bool) in libITKIOMINC-4.2.a(minc_1_rw.cpp.o)
      minc::minc_1_writer::open(char const*, std::vector<minc::dim_info, std::allocator<minc::dim_info> > const&, int, nc_type, int) in libITKIOMINC-4.2.a(minc_1_rw.cpp.o)
      _miclose in libITKIOMINC-4.2.a(netcdf_convenience.c.o)
      _MI2varname in libITKIOMINC-4.2.a(minc_compat.c.o)
      _MI2setfill in libITKIOMINC-4.2.a(minc_compat.c.o)
      _MI2sync in libITKIOMINC-4.2.a(minc_compat.c.o)
      _MI2redef in libITKIOMINC-4.2.a(minc_compat.c.o)
      ...

-- 
____________________________________________________________
Sean McBride, B. Eng                 sean at rogue-research.com
Rogue Research                        www.rogue-research.com 
Mac Software Developer              Montréal, Québec, Canada