[Insight-users] 答复: 答复: what is the problem when calls reader->Update()?
xianjun.sun.ext_CRC
xianjun.sun.ext at united-imaging.com
Fri Oct 26 07:53:20 EDT 2012
Hi, Dowson,
I enable ITK_USE_SYSTEM_GDCM in CMake as you said, but CMake gives errors
CMake Error at Modules/ThirdParty/GDCM/itk-module-init.cmake:5 (find_package):
By not providing "FindGDCM.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "GDCM", but
CMake did not find one.
Could not find a package configuration file provided by "GDCM" with any of
the following names:
GDCMConfig.cmake
gdcm-config.cmake
Add the installation prefix of "GDCM" to CMAKE_PREFIX_PATH or set
"GDCM_DIR" to a directory containing one of the above files. If "GDCM"
provides a separate development package or SDK, be sure it has been
installed.
Call Stack (most recent call first):
CMakeLists.txt:550 (include)
Configuring incomplete, errors occurred!
发件人: alex Dowson [mailto:alexdowson at hotmail.com]
发送时间: 2012年10月26日 19:11
收件人: xianjun.sun.ext_CRC; Saurabh Garg
抄送: insight-users at itk.org
主题: Re: [Insight-users] 答复: what is the problem when calls reader->Update()?
In CMake enable ITK_USE_SYSTEM_GDCM
From: xianjun.sun.ext_CRC<mailto:xianjun.sun.ext at united-imaging.com>
Sent: Friday, October 26, 2012 4:36 PM
To: Saurabh Garg<mailto:srbh.garg at gmail.com>
Cc: insight-users at itk.org<mailto:insight-users at itk.org>
Subject: [Insight-users] 答复: what is the problem when calls reader->Update()?
・ Thank your reply, but there are emerging<app:ds:emerging> new questions<app:ds:questions>.
#define ITK_IO_FACTORY_REGISTER_MANAGER
#include "itkImageFileReader.h"
1>c:\program files (x86)\itk\include\itk-4.2\itkimagefilereader.h(197): fatal error C1083: Cannot open include file: 'itkImageIOFactoryRegisterManager.h': No such file or directory
1>
1>Build FAILED.
The file itkImageIOFactoryRegisterManager.h is not existing under C:\Program Files (x86)\ITK \include\ITK-4.2, I find that it exists under output directories of ITK cmake. I included it in my project anyway and built it
1>itkgdcmMSFF-4.2.lib(gdcmUIDGenerator.obj) : error LNK2019: unresolved external symbol __imp__UuidCreate at 4 referenced in function "protected: static bool __cdecl gdcm::UIDGenerator::GenerateUUID(unsigned char *)" (?GenerateUUID at UIDGenerator@gdcm@@KA_NPAE at Z)
1>itkgdcmCommon-4.2.lib(gdcmSystem.obj) : error LNK2019: unresolved external symbol _WSACleanup at 0 referenced in function "public: static bool __cdecl gdcm::System::GetHostName(char * const)" (?GetHostName at System@gdcm@@SA_NQAD at Z)
1>itkgdcmCommon-4.2.lib(gdcmSystem.obj) : error LNK2019: unresolved external symbol _gethostname at 8 referenced in function "public: static bool __cdecl gdcm::System::GetHostName(char * const)" (?GetHostName at System@gdcm@@SA_NQAD at Z)
1>itkgdcmCommon-4.2.lib(gdcmSystem.obj) : error LNK2019: unresolved external symbol _WSAStartup at 8 referenced in function "public: static bool __cdecl gdcm::System::GetHostName(char * const)" (?GetHostName at System@gdcm@@SA_NQAD at Z)
1>E:\ITK\ItkToolsforRegTest\readnii\Debug\readnii.exe : fatal error LNK1120: 4 unresolved externals
1>
1>Build FAILED.
发件人: Saurabh Garg [mailto:srbh.garg at gmail.com]
发送时间: 2012年10月26日 18:44
收件人: xianjun.sun.ext_CRC
抄送: insight-users at itk.org
主题: Re: [Insight-users] what is the problem when calls reader->Update()?
Hi,
This exception is thrown when ITK does not recognize the file format that you are trying to read or write. I believe that the different ImageIO factories are not registered. To confirm, can you do the following in your code and see if it works:
Define this variable (ITK_IO_FACTORY_REGISTER_
MANAGER) before you
include itkImageFileReader.h file. This will register all the
different IOs and then you can use them.
-----------------
#define ITK_IO_FACTORY_REGISTER_MANAGER
#include <itkImageFileReader.h>
HTH,
Saurabh
On Fri, Oct 26, 2012 at 2:40 AM, xianjun.sun.ext_CRC <xianjun.sun.ext at united-imaging.com<mailto:xianjun.sun.ext at united-imaging.com>> wrote:
Hi, all,
I adapted several cases ITK\Examples\Registration\ImageRegistration8, ImageRegistration9 and so on, however, I cannot even read out image . I’m sure that the image is well and verified this with the case of ITK\Examples\IO\ ImageReadDicomSeriesWrite.
Maybe, my project’s configuration is not right or other reasons, could anyone help me testing my code?
#include "stdafx.h"
#include "itkImageFileReader.h"
#include "itkCommand.h"
int main(int argc, char* argv[])
{
const unsigned int Dimension = 3;
typedef short PixelType;
typedef itk::Image< PixelType, Dimension > FixedImageType;
typedef itk::ImageFileReader< FixedImageType > FixedImageReaderType;
FixedImageReaderType::Pointer fixedImageReader = FixedImageReaderType::New();
fixedImageReader->SetFileName( argv[1] );
try
{
fixedImageReader->Update();
}
catch( itk::ExceptionObject & excp )
{
std::cerr << "Exception thrown while reading the image" << std::endl;
std::cerr << excp << std::endl;
}
FixedImageType::RegionType fixedRegion = fixedImageReader->GetOutput()->GetBufferedRegion();
FixedImageType::SizeType fixedImageSize = fixedRegion.GetSize();
std::cout<<"fixed image size: "<<std::endl;
std::cout<< fixedImageSize[0]<<std::endl;
std::cout<< fixedImageSize[1]<<std::endl;
std::cout<< fixedImageSize[2]<<std::endl;
return 0;
}
When debug fixedImageReader->Update(), the Exception is as follows:
Exception thrown while reading the image
itk::ImageFileReaderException (0019F5A8)
Location: "void __thiscall itk::ImageFileReader<class itk::Image<short,3>,class
itk::DefaultConvertPixelTraits<short> >::GenerateOutputInformation(void)"
File: c:\program files (x86)\itk\include\itk-4.2\itkimagefilereader.hxx
Line: 143
Description: Could not create IO object for file E:\multi_organ_segmentation\da
ta\LiverCT_models\Atlas\data_case2.nii
Tried to create one of the following:
You probably failed to set a file suffix, or
set the suffix to an unsupported type.
fixed image size:
0
0
0
I am using:
- VS 2010
- Windows 7 64 bit.
and the platform I build my C++ projects is Win32.
ITK is installed in directory C:\Program Files (x86)\ITK,
VC+ + Directories ->Include Directories are filled with C:\Program Files (x86)\ITK \include\ITK-4.2
VC+ + Directories ->Library Directories filled with C:\Program Files (x86)\ITK\ITK\lib
Linker->Input->Additional Dependencies filled with all .lib files under directory C:\Program Files (x86)\ITK\lib
environment variable ->path add C:\Program Files (x86)\ITK\bin
ITKBiasCorrection-4.2.lib
ITKBioCell-4.2.lib
ITKCommon-4.2.lib
ITKDeprecated-4.2.lib
ITKDICOMParser-4.2.lib
ITKEXPAT-4.2.lib
ITKFEM-4.2.lib
itkgdcmCommon-4.2.lib
itkgdcmDICT-4.2.lib
itkgdcmDSED-4.2.lib
itkgdcmIOD-4.2.lib
itkgdcmjpeg12-4.2.lib
itkgdcmjpeg16-4.2.lib
itkgdcmjpeg8-4.2.lib
itkgdcmMSFF-4.2.lib
ITKgiftiio-4.2.lib
itkhdf5-4.2.lib
itkhdf5_cpp-4.2.lib
ITKIOBioRad-4.2.lib
ITKIOBMP-4.2.lib
ITKIOCSV-4.2.lib
ITKIOGDCM-4.2.lib
ITKIOGE-4.2.lib
ITKIOGIPL-4.2.lib
ITKIOHDF5-4.2.lib
ITKIOImageBase-4.2.lib
ITKIOIPL-4.2.lib
ITKIOJPEG-4.2.lib
ITKIOLSM-4.2.lib
ITKIOMesh-4.2.lib
ITKIOMeta-4.2.lib
ITKIONIFTI-4.2.lib
ITKIONRRD-4.2.lib
ITKIOPNG-4.2.lib
ITKIOSiemens-4.2.lib
ITKIOSpatialObjects-4.2.lib
ITKIOStimulate-4.2.lib
ITKIOTIFF-4.2.lib
ITKIOTransformBase-4.2.lib
ITKIOTransformHDF5-4.2.lib
ITKIOTransformInsightLegacy-4.2.lib
ITKIOTransformMatlab-4.2.lib
ITKIOVTK-4.2.lib
ITKIOXML-4.2.lib
itkjpeg-4.2.lib
ITKKLMRegionGrowing-4.2.lib
ITKLabelMap-4.2.lib
ITKMesh-4.2.lib
ITKMetaIO-4.2.lib
itkNetlibSlatec-4.2.lib
ITKniftiio-4.2.lib
ITKNrrdIO-4.2.lib
itkopenjpeg-4.2.lib
ITKOptimizers-4.2.lib
ITKOptimizersv4-4.2.lib
ITKPath-4.2.lib
itkpng-4.2.lib
ITKPolynomials-4.2.lib
ITKQuadEdgeMesh-4.2.lib
ITKReview-4.2.lib
ITKSpatialObjects-4.2.lib
ITKStatistics-4.2.lib
itksys-4.2.lib
itktiff-4.2.lib
itkv3p_lsqr-4.2.lib
itkv3p_netlib-4.2.lib
itkvcl-4.2.lib
ITKVideoCore-4.2.lib
ITKVideoIO-4.2.lib
itkvnl-4.2.lib
ITKVNLInstantiation-4.2.lib
itkvnl_algo-4.2.lib
ITKVTK-4.2.lib
ITKWatersheds-4.2.lib
itkzlib-4.2.lib
ITKznz-4.2.lib
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Kitware offers ITK Training Courses, for more information visit:
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