[Insight-users] read and write image series

Bill Lorensen bill.lorensen at gmail.com
Tue Sep 18 19:25:39 EDT 2012


Change this line:
  if( argc <4 );
to
  if( argc <4 )


On Tue, Sep 18, 2012 at 6:23 AM, shirani kannangara
<mangalika673 at gmail.com>wrote:

>
> Hi vtk/itk users
> I am constructing a program to read and write medical image(3D) data set ,
>  image data(raw data -VHPAbdomen.mhd)in ITk version 4.2 ,CMake2.8.9. IT
> built with 2 warnings.
>  itk codes are as follows.But it does not display output properly. It is
> as follows.My raw data file is attached herewith.I used
> ImageSeriesReadWrite.cxx
> *
> *
> *
> *
> *codes*
>  #include "itkImage.h"
> #include "itkImageSeriesReader.h"
> #include "itkImageFileWriter.h"
>  #include "itkNumericSeriesFileNames.h"
> #include "itkPNGImageIO.h"
>     #include <iostream>
>         #include <string>
>     using namespace std;
>
>  int main(  int argc, char **argv[])
>
> {
>     if( argc <4 );
>
>   {std::cout << "Usage: " << std::endl;
>     std::cout<<argv[0] <<  " firstSliceValue lastSliceValue
>  outputImageFile " << std::endl;
>    return EXIT_FAILURE;
>     }
>
>   //std::cout<<"sliceValue:"<<std::endl;
>   typedef unsigned char                       PixelType;
>   const unsigned int   Dimension = 3;
>
>   typedef itk::Image< PixelType, Dimension>  ImageType;
>
>   typedef itk::ImageSeriesReader< ImageType >  ReaderType;
>   typedef itk::ImageFileWriter<   ImageType >  WriterType;
>
>
>   ReaderType::Pointer reader = ReaderType::New();
>   WriterType::Pointer writer = WriterType::New();
>
>   const unsigned int first = 1;
>   const unsigned int last  = 450;
>   //char * outputFilename = argv[3];
>    char**outputFilename=  argv[3];
>
>   typedef itk::NumericSeriesFileNames NameGeneratorType;
>
>   NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
>
>   nameGenerator->SetSeriesFormat( "D:\\To_SMK\\VHPAbdomen%03d.mhd" );
>   nameGenerator->SetStartIndex( first );
>   nameGenerator->SetEndIndex( last);
>   nameGenerator->SetIncrementIndex(1);
>
>   reader->SetImageIO( itk::PNGImageIO::New() );
>
>   reader->SetFileNames( nameGenerator->GetFileNames()  );
>   writer->SetInput( reader->GetOutput() );
>   writer->SetFileName("test.mhd");
> try
>     {
>     writer->Update();
>     }
>   catch( itk::ExceptionObject & err )
>     {
>     std::cerr << "ExceptionObject caught !" << std::endl;
>     std::cerr << err << std::endl;
>     return EXIT_FAILURE;
>     };
>
>   return 0;
>
>   }
>
> *OUTPUT*
>
> D:\image\Debug>ImageReadWrite.exe
> Usage:
> 0022D9E0 firstSliceValue lastSliceValue  outputImageFile
>
> D:\image\Debug>ImageReadWrite.exe(1 450 test.mhd)
> Usage:
> 00E71324 firstSliceValue lastSliceValue  outputImageFile
>
> D:\image\Debug>ImageReadWrite.exe(1,450,test.mhd)
> Usage:
> 0115131C firstSliceValue lastSliceValue  outputImageFile
>
> D:\image\Debug>
>
> PL help me to get it corrected
> Thankas
>
> Shirani
>
>
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-- 
Unpaid intern in BillsBasement at noware dot com
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