[Insight-users] read and write image series
Bill Lorensen
bill.lorensen at gmail.com
Tue Sep 18 19:25:39 EDT 2012
Change this line:
if( argc <4 );
to
if( argc <4 )
On Tue, Sep 18, 2012 at 6:23 AM, shirani kannangara
<mangalika673 at gmail.com>wrote:
>
> Hi vtk/itk users
> I am constructing a program to read and write medical image(3D) data set ,
> image data(raw data -VHPAbdomen.mhd)in ITk version 4.2 ,CMake2.8.9. IT
> built with 2 warnings.
> itk codes are as follows.But it does not display output properly. It is
> as follows.My raw data file is attached herewith.I used
> ImageSeriesReadWrite.cxx
> *
> *
> *
> *
> *codes*
> #include "itkImage.h"
> #include "itkImageSeriesReader.h"
> #include "itkImageFileWriter.h"
> #include "itkNumericSeriesFileNames.h"
> #include "itkPNGImageIO.h"
> #include <iostream>
> #include <string>
> using namespace std;
>
> int main( int argc, char **argv[])
>
> {
> if( argc <4 );
>
> {std::cout << "Usage: " << std::endl;
> std::cout<<argv[0] << " firstSliceValue lastSliceValue
> outputImageFile " << std::endl;
> return EXIT_FAILURE;
> }
>
> //std::cout<<"sliceValue:"<<std::endl;
> typedef unsigned char PixelType;
> const unsigned int Dimension = 3;
>
> typedef itk::Image< PixelType, Dimension> ImageType;
>
> typedef itk::ImageSeriesReader< ImageType > ReaderType;
> typedef itk::ImageFileWriter< ImageType > WriterType;
>
>
> ReaderType::Pointer reader = ReaderType::New();
> WriterType::Pointer writer = WriterType::New();
>
> const unsigned int first = 1;
> const unsigned int last = 450;
> //char * outputFilename = argv[3];
> char**outputFilename= argv[3];
>
> typedef itk::NumericSeriesFileNames NameGeneratorType;
>
> NameGeneratorType::Pointer nameGenerator = NameGeneratorType::New();
>
> nameGenerator->SetSeriesFormat( "D:\\To_SMK\\VHPAbdomen%03d.mhd" );
> nameGenerator->SetStartIndex( first );
> nameGenerator->SetEndIndex( last);
> nameGenerator->SetIncrementIndex(1);
>
> reader->SetImageIO( itk::PNGImageIO::New() );
>
> reader->SetFileNames( nameGenerator->GetFileNames() );
> writer->SetInput( reader->GetOutput() );
> writer->SetFileName("test.mhd");
> try
> {
> writer->Update();
> }
> catch( itk::ExceptionObject & err )
> {
> std::cerr << "ExceptionObject caught !" << std::endl;
> std::cerr << err << std::endl;
> return EXIT_FAILURE;
> };
>
> return 0;
>
> }
>
> *OUTPUT*
>
> D:\image\Debug>ImageReadWrite.exe
> Usage:
> 0022D9E0 firstSliceValue lastSliceValue outputImageFile
>
> D:\image\Debug>ImageReadWrite.exe(1 450 test.mhd)
> Usage:
> 00E71324 firstSliceValue lastSliceValue outputImageFile
>
> D:\image\Debug>ImageReadWrite.exe(1,450,test.mhd)
> Usage:
> 0115131C firstSliceValue lastSliceValue outputImageFile
>
> D:\image\Debug>
>
> PL help me to get it corrected
> Thankas
>
> Shirani
>
>
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--
Unpaid intern in BillsBasement at noware dot com
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