[Insight-users] Problems with ITK and Linux
Gabriel Santiago
santiago.eletrica at gmail.com
Wed Sep 26 13:12:18 EDT 2012
Well, I did use "Eclipse CDT 4" option, but still not working.
Actually, I am using Eclipse Indigo. Could this be a problem?
On 26 September 2012 14:03, Matt McCormick <matt.mccormick at kitware.com>wrote:
> PS. Please reply-to-all so the messages are archived on the mailing list.
>
> On Wed, Sep 26, 2012 at 12:59 PM, Matt McCormick
> <matt.mccormick at kitware.com> wrote:
> > Hi Gabriel,
> >
> > You must use CMake to generate the Makefiles/Project Files. Then, use
> > your build system of choice to run the Makefiles/Project Files. The
> > CMake default "generator" on Linux is "Unix Makefiles". If you use
> > this, then run the "make" command in the CMake binary directory. If
> > you want to use Eclipse, you must specify the "Eclipse CDT4 - Unix
> > Makefiles" generator. This will create Eclipse CDT 4.9 projects
> > files. You need to use these when you try to build, so Eclipse will not
> > know where to look for the header files, libraries.
> >
> > HTH,
> > Matt
> >
> > On Wed, Sep 26, 2012 at 12:43 PM, Gabriel Santiago
> > <santiago.eletrica at gmail.com> wrote:
> >> Ok, I just run the example and got the same error:
> >>
> >> fatal error: vcl_config_manual.h: No such file or directory
> >> ComputeGradientMagnitudeOfGrayscaleImage line 242, external
> location:
> >> /usr/local/include/ITK-4.2/vcl_compiler.h C/C++ Problem
> >>
> >>
> >>
> >> On 26 September 2012 13:31, Gabriel Santiago <
> santiago.eletrica at gmail.com>
> >> wrote:
> >>>
> >>> In fact, when I import those files to Eclipse, it shows that every
> single
> >>> line of the code has some kind of error and I can not build it.
> >>>
> >>>
> >>> On 26 September 2012 13:28, Gabriel Santiago <
> santiago.eletrica at gmail.com>
> >>> wrote:
> >>>>
> >>>> Yes, that's correct. That's the the ITK_DIR:
> >>>> /usr/local/lib/cmake/ITK-4.2/
> >>>> I am trying to run the example you told me. But no success up to
> now...
> >>>> What should I do?
> >>>>
> >>>> thx!
> >>>>
> >>>>
> >>>> On 26 September 2012 13:24, Matt McCormick <
> matt.mccormick at kitware.com>
> >>>> wrote:
> >>>>>
> >>>>> Hi Gabriel,
> >>>>>
> >>>>> On Wed, Sep 26, 2012 at 12:02 PM, Gabriel Santiago
> >>>>> <santiago.eletrica at gmail.com> wrote:
> >>>>> > Thank you, Matt. But can you please, tell step by step exactly what
> >>>>> > should I
> >>>>> > do? I am a beginner to this CMake thing. What should be the ITK_DIR
> >>>>> > correct
> >>>>> > configuration?
> >>>>>
> >>>>> ITK_DIR should be the directory containing the file ITKConfig.cmake.
> >>>>> If ITK is not install, it is the location of the binary build
> >>>>> directory. If ITK is installed, I believe in your case it would be
> >>>>> /usr/local/lib/cmake/ITK-4.2/
> >>>>>
> >>>>> HTH,
> >>>>> Matt
> >>>>>
> >>>>>
> >>>>> >
> >>>>> > Thanks again,
> >>>>> >
> >>>>> >
> >>>>> > On 26 September 2012 12:35, Matt McCormick
> >>>>> > <matt.mccormick at kitware.com>
> >>>>> > wrote:
> >>>>> >>
> >>>>> >> On Wed, Sep 26, 2012 at 10:37 AM, Gabriel Santiago
> >>>>> >> <santiago.eletrica at gmail.com> wrote:
> >>>>> >> > Hi Matt,
> >>>>> >> >
> >>>>> >> > Thanks for your reply.
> >>>>> >> >
> >>>>> >> > Here it is:
> >>>>> >> > //- File name: myProject.cpp in myProject folder.
> >>>>> >> > // -- Code:
> >>>>> >> >
> >>>>> >> > #include "/usr/local/include/ITK-4.2/itkImage.h"
> >>>>> >> > #include "/usr/local/include/ITK-4.2/itkImageFileReader.h"
> >>>>> >> > #include
> >>>>> >> > "/usr/local/include/ITK-4.2/itkGradientMagnitudeImageFilter.h"
> >>>>> >> >
> >>>>> >> > int main(int arcg, char** argv)
> >>>>> >> > {
> >>>>> >> > typedef itk::Image<unsigned short, 2> ImageType;
> >>>>> >> > typedef itk::ImageFileReader<ImageType> ReaderType;
> >>>>> >> > typedef itk::GradientMagnitudeImageFilter<ImageType,
> ImageType>
> >>>>> >> > FilterType;
> >>>>> >> >
> >>>>> >> > ReaderType::Pointer reader = ReaderType::New();
> >>>>> >> > FilterType::Pointer filter = FilterType::New();
> >>>>> >> >
> >>>>> >> > reader->SetFileName(argv[1]);
> >>>>> >> > filter->SetInput(reader->GetOutput());
> >>>>> >> > filter->Update();
> >>>>> >> >
> >>>>> >> > return 0;
> >>>>> >> >
> >>>>> >> > }
> >>>>> >> >
> >>>>> >> > // -- CMakeLists.txt in myProject folder.
> >>>>> >> >
> >>>>> >> > PROJECT( myProject )
> >>>>> >> > FIND_PACKAGE ( ITK REQUIRED )
> >>>>> >> > IF ( ITK_FOUND )
> >>>>> >> > INCLUDE( ${ITK_USE_FILE} )
> >>>>> >> > ENDIF( ITK_FOUND )
> >>>>> >> > ADD_EXECUTABLE( myProject myProject.cpp )
> >>>>> >> > TARGET_LINK_LIBRARIES ( myProject ITKCommon ITKIO)
> >>>>> >> >
> >>>>> >> >
> >>>>> >> > Ow! And I forgot to mention that in order to make things work, I
> >>>>> >> > had to
> >>>>> >> > include the whole path to itk libraries.
> >>>>> >>
> >>>>> >> Yes, that should not be necessary. It should be '#include
> >>>>> >> "itkImage.h"', etc. The "INCLUDE" statement of your
> CMakeLists.txt
> >>>>> >> should be calling the CMake "include_directories" statement, which
> >>>>> >> sets up the right include "-I" flags when building.
> >>>>> >>
> >>>>> >> Some sanity checks:
> >>>>> >>
> >>>>> >> * Make sure ITK_DIR is set correctly in the CMake configuration.
> >>>>> >> * build with "make VERBOSE=1" and make use there is a
> >>>>> >> "-I/usr/local/include/ITK-4.2"
> >>>>> >>
> >>>>> >> Try this example (code downloadable in the sidebar on the left):
> >>>>> >>
> >>>>> >>
> >>>>> >>
> >>>>> >>
> http://itk.org/ITKExamples/Examples/Filtering/ImageGradient/ComputeGradientMagnitudeOfGrayscaleImage/ComputeGradientMagnitudeOfGrayscaleImage.html
> >>>>> >>
> >>>>> >> Hope this helps,
> >>>>> >> Matt
> >>>>> >>
> >>>>> >>
> >>>>> >> >
> >>>>> >> >
> >>>>> >> > On 26 September 2012 11:34, Matt McCormick
> >>>>> >> > <matt.mccormick at kitware.com>
> >>>>> >> > wrote:
> >>>>> >> >>
> >>>>> >> >> Hi Gabriel,
> >>>>> >> >>
> >>>>> >> >> Could you please share the source code you are using for the
> >>>>> >> >> project.
> >>>>> >> >>
> >>>>> >> >> Thanks,
> >>>>> >> >> Matt
> >>>>> >> >>
> >>>>> >> >> On Wed, Sep 26, 2012 at 10:12 AM, Gabriel Santiago
> >>>>> >> >> <santiago.eletrica at gmail.com> wrote:
> >>>>> >> >> > Hi guys,
> >>>>> >> >> >
> >>>>> >> >> > I am trying to run ITK on my Ubuntu 12.04.1. I did exactly
> what
> >>>>> >> >> > the
> >>>>> >> >> > tutorial
> >>>>> >> >> > says, except that my Cmake and ITK are the most recent
> versions.
> >>>>> >> >> > I also installed the CMake gui interface, which does exactly
> >>>>> >> >> > what the
> >>>>> >> >> > ccmake
> >>>>> >> >> > does and has the same interface that the Windows version.
> >>>>> >> >> >
> >>>>> >> >> > After I installed ITK on my linux, I tried myProject
> example, as
> >>>>> >> >> > described
> >>>>> >> >> > in the tutorial. After I made the .cpp (or .cxx) file and the
> >>>>> >> >> > CMakeLists.txt
> >>>>> >> >> > with the same code found in "Getting Started I", I used
> CMake,
> >>>>> >> >> > choosing
> >>>>> >> >> > my
> >>>>> >> >> > /workspace/myProject as source folder and
> >>>>> >> >> > /workspace/myProject/bin as
> >>>>> >> >> > binary
> >>>>> >> >> > directory. Everything seems to work fine, until I try to
> build
> >>>>> >> >> > it.
> >>>>> >> >> >
> >>>>> >> >> > I get the following error message:
> >>>>> >> >> >
> >>>>> >> >> > fatal error: vcl_config_manual.h: No such file or directory
> >>>>> >> >> > myProject
> >>>>> >> >> > line 242, external location:
> >>>>> >> >> > /usr/local/include/ITK-4.2/vcl_compiler.h
> >>>>> >> >> > C/C++ Problem
> >>>>> >> >> >
> >>>>> >> >> > Can anyone, please, help me?
> >>>>> >> >> >
> >>>>> >> >> > Thanks in advance,
> >>>>> >> >> >
> >>>>> >> >> > --
> >>>>> >> >> > Gabriel Santiago
> >>>>> >> >> >
> >>>>> >> >> > _____________________________________
> >>>>> >> >> > Powered by www.kitware.com
> >>>>> >> >> >
> >>>>> >> >> > Visit other Kitware open-source projects at
> >>>>> >> >> > http://www.kitware.com/opensource/opensource.html
> >>>>> >> >> >
> >>>>> >> >> > Kitware offers ITK Training Courses, for more information
> visit:
> >>>>> >> >> > http://www.kitware.com/products/protraining.php
> >>>>> >> >> >
> >>>>> >> >> > Please keep messages on-topic and check the ITK FAQ at:
> >>>>> >> >> > http://www.itk.org/Wiki/ITK_FAQ
> >>>>> >> >> >
> >>>>> >> >> > Follow this link to subscribe/unsubscribe:
> >>>>> >> >> > http://www.itk.org/mailman/listinfo/insight-users
> >>>>> >> >> >
> >>>>> >> >
> >>>>> >> >
> >>>>> >> >
> >>>>> >> >
> >>>>> >> > --
> >>>>> >> > Gabriel Santiago
> >>>>> >> > Engenheiro de Computação - Serviço de Informática/ Hospital das
> >>>>> >> > Clínicas
> >>>>> >> > de
> >>>>> >> > São Paulo
> >>>>> >> > santiago.eletrica at gmail.com
> >>>>> >> > Cel.: +55 11 99801-0881
> >>>>> >> >
> >>>>> >> > ~"As long as I live so long do I learn"~
> >>>>> >> > Ramakhrishna
> >>>>> >> >
> >>>>> >
> >>>>> >
> >>>>> >
> >>>>> >
> >>>>> > --
> >>>>> > Gabriel Santiago
> >>>>> > Engenheiro de Computação - Serviço de Informática/ Hospital das
> >>>>> > Clínicas de
> >>>>> > São Paulo
> >>>>> > santiago.eletrica at gmail.com
> >>>>> > Cel.: +55 11 99801-0881
> >>>>> >
> >>>>> > ~"As long as I live so long do I learn"~
> >>>>> > Ramakhrishna
> >>>>> >
> >>>>
> >>>>
> >>>>
> >>>>
> >>>> --
> >>>> Gabriel Santiago
> >>>> Engenheiro de Computação - Serviço de Informática/ Hospital das
> Clínicas
> >>>> de São Paulo
> >>>> santiago.eletrica at gmail.com
> >>>> Cel.: +55 11 99801-0881
> >>>>
> >>>> ~"As long as I live so long do I learn"~
> >>>> Ramakhrishna
> >>>>
> >>>
> >>>
> >>>
> >>> --
> >>> Gabriel Santiago
> >>> Engenheiro de Computação - Serviço de Informática/ Hospital das
> Clínicas
> >>> de São Paulo
> >>> santiago.eletrica at gmail.com
> >>> Cel.: +55 11 99801-0881
> >>>
> >>> ~"As long as I live so long do I learn"~
> >>> Ramakhrishna
> >>>
> >>
> >>
> >>
> >> --
> >> Gabriel Santiago
> >> Engenheiro de Computação - Serviço de Informática/ Hospital das
> Clínicas de
> >> São Paulo
> >> santiago.eletrica at gmail.com
> >> Cel.: +55 11 99801-0881
> >>
> >> ~"As long as I live so long do I learn"~
> >> Ramakhrishna
> >>
>
--
Gabriel Santiago
Engenheiro de Computação - Serviço de Informática/ Hospital das Clínicas de
São Paulo
santiago.eletrica at gmail.com
Cel.: +55 11 99801-0881
~"As long as I live so long do I learn"~
Ramakhrishna
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