[Insight-users] Weird behavior fo itk::Image<>::RegionType
Ho Cheung
hocheung20 at gmail.com
Tue Aug 20 21:05:16 EDT 2013
That code compiles for me on exactly the same platform as you have
mentioned. Are you embedding this in a larger piece of code?
hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$ lsb_release -a
No LSB modules are available.
Distributor ID: Ubuntu
Description: Ubuntu 12.04.2 LTS
Release: 12.04
Codename: precise
hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$ gcc -v
Using built-in specs.
COLLECT_GCC=gcc
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/4.6/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu/Linaro
4.6.3-1ubuntu5' --with-bugurl=file:///usr/share/doc/gcc-4.6/README.Bugs
--enable-languages=c,c++,fortran,objc,obj-c++ --prefix=/usr
--program-suffix=-4.6 --enable-shared --enable-linker-build-id
--with-system-zlib --libexecdir=/usr/lib --without-included-gettext
--enable-threads=posix --with-gxx-include-dir=/usr/include/c++/4.6
--libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu
--enable-libstdcxx-debug --enable-libstdcxx-time=yes
--enable-gnu-unique-object --enable-plugin --enable-objc-gc
--disable-werror --with-arch-32=i686 --with-tune=generic
--enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu
--target=x86_64-linux-gnu
Thread model: posix
gcc version 4.6.3 (Ubuntu/Linaro 4.6.3-1ubuntu5)
hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$ make -j12
[100%] Built target itk_region_type
hocheung20 at hocheung20-VirtualBox:~/ITK-RegionType/bin$
Ho Cheung
hocheung20 at gmail.com
Cell: (775) 388-2368
On Mon, Aug 19, 2013 at 7:30 AM, Gabriel Santiago <
santiago.eletrica at gmail.com> wrote:
> Hello,
>
> Thank you for your reply!
>
> I am using Linux (Ubuntu 12.04) and gcc version 4.6.3 and Insight Toolkit
> 4.2.1.
>
> Thanks,
>
>
>
> On 16 August 2013 17:57, Ho Cheung <hocheung20 at gmail.com> wrote:
>
>> Hi Gabriel,
>>
>> Could you describe your platform more?
>>
>> Windows? Mac? Linux?
>> Compiler version(s)?
>>
>> Thanks,
>>
>> Ho Cheung
>>
>> On Aug 16, 2013, at 3:29 PM, Gabriel Santiago <
>> santiago.eletrica at gmail.com> wrote:
>>
>> Could be an ITK version problem? It doens't work for me no matter what I
>> do!
>>
>>
>> On 16 August 2013 17:26, Matt McCormick <matt.mccormick at kitware.com>wrote:
>>
>>> Hi Gabriel,
>>>
>>> Your program compiles for me.
>>>
>>> HTH,
>>> Matt
>>>
>>>
>>> On Fri, Aug 16, 2013 at 7:45 PM, Gabriel Santiago <
>>> santiago.eletrica at gmail.com> wrote:
>>>
>>>> The weirdest thing is, if I replace the variables *
>>>> desiredRegion.SetSize(size)* and* desiredRegion.SetIndex(start)*inside for
>>>> * **desiredRegion.SetSize(inputRegion.GetSize()*) and *
>>>> desiredRegion.SetIndex(**inputRegion.GetIndex()*) respectively, it
>>>> doesn't appear the error message and the program compiles just fine.
>>>>
>>>>
>>>>
>>>> On 16 August 2013 16:32, Gabriel Santiago <santiago.eletrica at gmail.com>wrote:
>>>>
>>>>> Sorry, but where you read
>>>>>
>>>>>
>>>>> *typedef itk::Image<InputAnalyzeImage, 3> Image3D;
>>>>> *
>>>>> *typedef itk::Image<OutputJPGImage, 2> Image2D;*
>>>>>
>>>>> Please, read
>>>>>
>>>>> *typedef itk::Image<InputImage, 3> Image3D;
>>>>> *
>>>>> *typedef itk::Image<OutputImage, 2> Image2D;*
>>>>>
>>>>> and
>>>>>
>>>>>
>>>>> *typedef itk::ImageFileReader<**Analyze3DImage> Reader3D;
>>>>> typedef itk::ImageFileWriter<**JPG2DImage> Writer2D;
>>>>>
>>>>> *
>>>>> read*
>>>>> *
>>>>>
>>>>> *typedef itk::ImageFileReader<**Image3D> Reader3D;
>>>>> typedef itk::ImageFileWriter<Image2D**> Writer2D;*
>>>>>
>>>>> Thanks,
>>>>>
>>>>>
>>>>>
>>>>> On 16 August 2013 16:26, Gabriel Santiago <santiago.eletrica at gmail.com
>>>>> > wrote:
>>>>>
>>>>>>
>>>>>> Here it is:
>>>>>> *
>>>>>> // STD libraries:
>>>>>> #include <iostream>
>>>>>> #include <string>
>>>>>> // ITK libraries:
>>>>>> #include "itkImage.h"
>>>>>> #include "itkImageFileReader.h"
>>>>>> #include "itkImageFileWriter.h"
>>>>>> #include "itkExtractImageFilter.h"
>>>>>> #include "itkAnalyzeImageIO.h"
>>>>>> #include "itkOrientImageFilter.h"
>>>>>> #include "itkSize.h"
>>>>>>
>>>>>> *
>>>>>> *// Type def.
>>>>>> *
>>>>>> *typedef unsigned char InputImage;
>>>>>> typedef unsigned char OutputImage;
>>>>>>
>>>>>> // Image def.::
>>>>>>
>>>>>> typedef itk::Image<InputAnalyzeImage, 3> Image3D;
>>>>>> typedef itk::Image<OutputJPGImage, 2> Image2D;
>>>>>>
>>>>>> typedef itk::ImageFileReader<**Analyze3DImage> Reader3D;
>>>>>> typedef itk::ImageFileWriter<**JPG2DImage> Writer2D;
>>>>>> typedef itk::ExtractImageFilter<**Image3D, Image2D> Filter3D;
>>>>>>
>>>>>> Image2D::Pointer extract2DSlice(Image3D::**Pointer buffer, int
>>>>>> plane, int slice)
>>>>>> {
>>>>>> Filter3D::Pointer filter = Filter3D::New();
>>>>>> Image3D::RegionType inputRegion = buffer->**
>>>>>> GetLargestPossibleRegion();
>>>>>>
>>>>>>
>>>>>> Image3D::SizeType size = inputRegion.GetSize();
>>>>>> size[plane] = 0;
>>>>>> Image3D::IndexType start = inputRegion.GetIndex();
>>>>>> const unsigned int sliceNumber = slice;
>>>>>> start[plane] = sliceNumber;
>>>>>>
>>>>>> *
>>>>>> * // The problem is HERE!
>>>>>> *
>>>>>> *
>>>>>> Image3D::RegionType desiredRegion;
>>>>>> desiredRegion.SetSize(size);
>>>>>> desiredRegion.SetIndex(start);
>>>>>>
>>>>>> filter->SetExtractionRegion(**desiredRegion);
>>>>>> filter->SetInput(buffer);
>>>>>>
>>>>>> Image2D::Pointer img = filter->GetOutput();
>>>>>> return img;
>>>>>> }*
>>>>>>
>>>>>>
>>>>>>
>>>>>> On 16 August 2013 16:21, Bill Lorensen <bill.lorensen at gmail.com>wrote:
>>>>>>
>>>>>>> If you post a small, minimal example that with all includes, perhaps
>>>>>>> we can help.
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> On Fri, Aug 16, 2013 at 3:17 PM, Gabriel Santiago <
>>>>>>> santiago.eletrica at gmail.com> wrote:
>>>>>>>
>>>>>>>> Dear all,
>>>>>>>>
>>>>>>>> I am trying to reproduce the example of page 118, of the
>>>>>>>> itkSoftwareGuide, changing
>>>>>>>>
>>>>>>>> *typedef itk::ImageMaskSpatialObject<3> ImageMaskSpatialObject;*
>>>>>>>>
>>>>>>>> to
>>>>>>>>
>>>>>>>> *typedef itk::Image<InputAnalyzeImage, 3> Image3D;*
>>>>>>>>
>>>>>>>> I think it should work, but when I come to the following lines
>>>>>>>>
>>>>>>>> * Image3D::SizeType size = inputRegion.GetSize();
>>>>>>>> size[plane] = 0;
>>>>>>>> Image3D::IndexType start = inputRegion.GetIndex();
>>>>>>>> const unsigned int sliceNumber = slice;
>>>>>>>> start[plane] = sliceNumber;
>>>>>>>>
>>>>>>>> Image3D::RegionType desiredRegion;
>>>>>>>> desiredRegion.SetSize(size);
>>>>>>>> desiredRegion.SetIndex(start);*
>>>>>>>>
>>>>>>>> I am getting the following error messages:
>>>>>>>>
>>>>>>>> *Invalid argumentes:
>>>>>>>> *
>>>>>>>> *Candidates are:
>>>>>>>> *
>>>>>>>> *void SetSize(const itk::Size<<unknown>>&) and
>>>>>>>> void SetSize(unsigned long int, unsigned long int)
>>>>>>>>
>>>>>>>>
>>>>>>>> Invalid argumentes:
>>>>>>>> Candidates are:
>>>>>>>> void SetIndex(const itk::Index<<unknown>>&) and
>>>>>>>> void SetIndex(unsigned long int, unsigned long int)
>>>>>>>> *
>>>>>>>>
>>>>>>>> Can anyone, please, help me? I am using itk v4.2.
>>>>>>>> What is going on?
>>>>>>>>
>>>>>>>> Thanks in advance,
>>>>>>>>
>>>>>>>> --
>>>>>>>> Gabriel Santiago
>>>>>>>>
>>>>>>>> ~"As long as I live so long do I learn"~
>>>>>>>> Ramakhrishna
>>>>>>>>
>>>>>>>> _____________________________________
>>>>>>>> Powered by www.kitware.com
>>>>>>>>
>>>>>>>> Visit other Kitware open-source projects at
>>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>>
>>>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>>>> http://www.kitware.com/products/protraining.php
>>>>>>>>
>>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>>
>>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>>
>>>>>>> --
>>>>>>> Unpaid intern in BillsBasement at noware dot com
>>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Gabriel Santiago
>>>>>> Engenheiro de Computação - Serviço de Informática/ Hospital das
>>>>>> Clínicas de São Paulo
>>>>>> santiago.eletrica at gmail.com
>>>>>> Cel.: +55 11 99801-0881
>>>>>>
>>>>>>
>>>>>> ~"As long as I live so long do I learn"~
>>>>>> Ramakhrishna
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Gabriel Santiago
>>>>>
>>>>> ~"As long as I live so long do I learn"~
>>>>> Ramakhrishna
>>>>>
>>>>
>>>>
>>>>
>>>> --
>>>> Gabriel Santiago
>>>>
>>>> ~"As long as I live so long do I learn"~
>>>> Ramakhrishna
>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.php
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>
>>>>
>>>
>>
>>
>> --
>> Gabriel Santiago
>>
>> ~"As long as I live so long do I learn"~
>> Ramakhrishna
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
>>
>>
>>
>
>
> --
> Gabriel Santiago
>
> ~"As long as I live so long do I learn"~
> Ramakhrishna
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.itk.org/pipermail/insight-users/attachments/20130820/a9795d85/attachment.htm>
More information about the Insight-users
mailing list