[Insight-users] [ANNOUNCE] ITK 4.5.0 has been released!

Matt McCormick matt.mccormick at kitware.com
Wed Dec 18 14:40:50 EST 2013


- ITK 4.5.0 Release Notes

Subject:
[ANNOUNCE] ITK 4.5.0 has been released!

The InsightToolkit (ITK) 4.5.0 has been released!

Links to the Sourceforge.net tarballs can be found on the download page:

  http://www.itk.org/ITK/resources/software.html


Outline
----------

1. Introduction
2. New Documentation
3  New Features
4. ITK Changelog
5. ITKApps Changelog


Introduction
---------------

The 4.5 release is a major milestone that marks the hard work of many
outstanding community members. Among the major contributions in this
release are registrations computed with 32-bit floats, a new edition
of the Software Guide, the first release of the wiki examples tarball,
and the first release of the Sphinx examples tarballs.

Links to the Sourceforge.net tarballs can be found on the download page:

  http://www.itk.org/ITK/resources/software.html

Enjoy ITK!


New Documentation
------------------------------

- New edition of the ITK Software Guide.  For the first time since
version 2.4, a new edition of the ITK Software Guide is available, a
book that has been a close companion to numerous medical imaging
graduate students. In addition to numerous updates, the resource now
has a community contribution mechanism that mirrors the contribution
process for the ITK repository.  Improvements are welcome to this
living document. The new edition is available in PDF form and
downloadable from http://itk.org/ItkSoftwareGuide.pdf .

- ITK wiki examples tarball.  A buildable archive of the outstanding
examples indexed at http://itk.org/Wiki/ITK/Examples is available to
download, build against the current release, and learn from.

- ITK Sphinx examples downloads.  Examples available online at
http://itk.org/ITKExamples/ are stored in Git version control but
rendered in HTML, PDF, and EPUB output formats with the Sphinx
documentation system.  They have CTest unit tests, inline Doxygen
class descriptions and links to full Doxygen class documentation,
nightly generated Gitstats, an index, quick search, and a contribution
mechanism that mirrors ITK or the Software Guide.

- ITK repository examples links in Doxygen HTML documentation.  A
downloadable archive of the Doxygen generated HTML documentation is
available as usual, but examples from the ITK repository Examples/
directory are also indexed in the description of every Doxygen class.


New Features
------------------

- ITKv4 registrations can now be run in either 64-bit double or 32-bit
float modes.  Both double and float transform types are also now
supported by metrics, optimizers, and IO readers/writers.
- SpacingValueType -- Previously ITK only supported representing
physical space as type double.  This patch introduces a typedef to
encapsulate the concept of space precision to more clearly document
the intended characteristics of the types.  This is the first step
toward allowing compile time selection of using single precision types
for characterizing physical space (origin, spacing, direction
cosines).  There is an CMake configuration option,
ITK_USE_FLOAT_SPACE_PRECISION, to allow building the entire toolbox in
single precision mode, and currently is intended to facilitate future
performance testing. NOTE:  Use of ITK_USE_FLOAT_SPACE_PRECISION
causes many regression test failures, and is not intended for
production use at this time.
- Support for “float” type as physical units type in the Registration
framework, which makes possible float type displacement fields and
faster, less memory intensive registrations
- Many performance improvements in Registration -- significant
performance improvements made for ImageRegistration. See patch sets
prefixed by PERF.  False sharing across threads as identified and
removed.  Unnecessary mutex lock identified and removed.  For one
common case on real sized data, this resulted in a 70X speed increase.
- Two new Remote modules:
    - MGHIO -- Partial support for reading/writing image files from
FreeSurfer (Not a complete implementation, but simple label maps and
intensity images can be read/written).
    - SmoothingRecursiveYvvGaussianFilter -- From Insight Journal
submission: http://hdl.handle.net/10380/3425
- The SCIFIO remote module has also seen nice updates.
- IO module libraries will now be built as shared libraries with
BUILD_SHARED_LIBS ON
- MRCImageIO moved out of the Review Module
- BinShrinkImageFilter added -- From Insight Journal submission:
http://hdl.handle.net/10380/3450
- WrapITK Python wrapping now supporting GCC 4.8
- JPEG format now writes out spacing in physical units
- MINC ImageIO improvements:
    - Correct handling of missing or damaged minc file
    - MINCTransformAdapter class to use MINC style transformations
stored in .xfm files, using native minc general_transform functions,
which means that thin-plate spline non-linear transformations are
accessible and calculation of inverse transformation can be done in a
way consistent with minc tools.
    - Ability to store any linear transformation based on
MatrixOffsetTransformBase<double,3,3> in minc style .xfm file (using
TransformFileWriter).
- OtsuThresholding classes made more consistent with other libraries
    - Now the output of the threshold value may be different from
previous releases (bug fix)
- Synchronized with “teem” library 1.11.1, providing NRRD functionalities.
- FlatStructuringElement new option to use a parametric radius in Ball() method
- LevelSetsv4 now has a penalty term for overlap between level sets.
- Can now read Philips 4D multi-frame DICOM files
- CMake variable ITK_BUILD_ALL_MODULES was replaced with
ITK_BUILD_DEFAULT_MODULES (same behavior, more appropriate name).
- Remote Modules were simplified by removing the CMake configuration
variable Fetch_{RemoteModuleName} and only requiring
Module_{RemoteModuleName}
- New CTest label “RUNS_LONG” to makes it possible to exclude long
running tests with “ctest -LE RUNS_LONG”
- Deprecate ITK_USE_REVIEW CMake variable in favor of Module_ITKReview
- Better support for system installed GDCM
- Preliminary support for Visual Studio 12 (2013)
- Preliminary support for OSX 10.9 - Maverick
- Support for building ITK against a DCMTK 3.6.0 installed on Ubuntu
using apt-get
- Improved support for C++11
- More consistent coding style across the toolkit
- *Lots* of important bug fixes, including 73 issues reported by
Coverity static analysis
- And more! See details in the log below.


List of changes since v4.5rc03
----------------------------------------
Bradley Lowekamp (4):
      BUG: Fix rounding issue with HistogramPlotter test
      COMP: Remove unused method to manage warning
      COMP: Prevent compile-time numeric warnings in Float Exception test
      BUG: Add new baseline and relax tolerance for histogram plotter

Brian Helba (2):
      BUG: Put ImageIOBase helper function in anonymous namespace
      BUG: Remove an invalid test case that will always fail

Constantine Zakkaroff (1):
      DOC: ITK Software Guide Reference Label Fix

Kent Williams (1):
      COMP: Remove outdated conditionals/pragmas

Matthew McCormick (9):
      COMP: Fix BSplineDeformableTransformTest for GCC4.8.2.
      COMP: Disable -Warray-bounds for GCC 4.7, 4.8.
      COMP: Fix HDF5 add_custom_command TARGET does not exist warnings.
      COMP: ImageRegistrationHistogramPlotter HistogramWriter visibility.
      BUG: Do not clobber Git origin pushurl.
      COMP: Fix signed/unsigned comparison in itkBinShrinkImageFilterTest1.
      BUG: Fix BinShrinkImageFilter 32-bit failures with rounding.
      BUG: Make RealTimeClock on Windows report consistent time.
      ENH: Mark ImageRegistrationHistogramPlotterTest as RUNS_LONG.

Paolo Zaffino (1):
      ENH: wrap CenteredTransformInitializer 2D images

Xiaoxiao Liu (2):
      BUG: itkVTKTetrahedraMeshReader fails on a win64 build.
      BUG: SCIFIO auto image factory registration.

List of changes since v4.5rc02
----------------------------------------

Bill Lorensen (1):
      ENH: Restore/convert/repair ImageRegistrationHistogramPlotter

Bradley Lowekamp (5):
      DOC: Fixing BinShrink image caption
      BUG: Fix up-casting causing inf loop
      BUG: remove HDF5 configuration option propagated to the top
      BUG: initialize member variables in LabelVoting filter
      BUG: Add missing cmake file for MRCIO and wrapITK

Jean-Christophe Fillion-Robin (1):
      COMP: Ensure FindDCMTK.cmake provided by ITK is used (build tree case)

Matthew McCormick (2):
      ENH: Wrap additional dimensions for TileImageFilter.
      BUG: LeafTreeIterator does not produce correct output.

Xiaoxiao Liu (1):
      BUG: Fix remote image IO module registration.

List of changes since v4.5rc01
----------------------------------------

Bill Lorensen (1):
      COMP: Dead code

Bradley Lowekamp (6):
      COMP: Fix C++11 conversion warning.
      STYLE: Use double type in array initializer list for spacing
      COMP: No Vector pixel type for BinShrink
      BUG: Use standard baseline and compare for validation
      BUG: Remove initially available ITK_WRAP_JAVA cmake option
      COMP: Use SimpleNew macro to avoid Clone method

Brian Helba (1):
      DOC: Clarified NormalizedCorrelationImageToImageMetric value

Hans Johnson (1):
      BUG: SpacePrecision typedef's incorrect.

Julien Michel (1):
      BUG: Using static const variable causes ld error when using
dynamic libraries

KWSys Robot (1):
      KWSys 2013-11-21 (1010d0e3)

Matt Leotta (1):
      COMP: Fix improper included header in vcl_memory_tr1.h

Matthew McCormick (1):
      BUG: Update VXL update README location.

List of changes since v4.4.0
--------------------------------------

Ali Ghayoor (5):
      ENH: transform reader/writer filters are templated on output
precision type
      BUG: Fix memory leak error in itkHDF5TransformIO
      DOC: Migration guide is updated for multi precision of ITK
      BUG: TvirtualImage mismatch in registrationV4 and metric object
      STYLE: check dynamic cast validation in ITKv4 Registration

Andinet Enquobahrie (1):
      BUG: UseSeriesDetails variable not correctly set

Arnaud Gelas (24):
      ENH: Converting itk::Point, Size, Index, Vector, Matrix to
corresponding OpenCV data structure
      BUG: Check that region for thread is not empty
      COMP: use concept checking instead of runtime checking
      BUG: Fix failure in InteractivePause test
      ENH: updating level sets sparse layer visualization
      ENH: Upgrade doxygen config file
      BUG: fix KWStyle errors in itkVTKVisualize* files
      BUG: Fix visualization of 3D level-sets
      ENH: Add Concept checking for 2D Visualization
      ENH: Use partial template specialization for iso value vis
      BUG: Check that region for thread is not empty
      BUG: Fix failure in InteractivePause test
      BUG: fix include to the corresponding hxx
      COMP: fix compilation error with Set/Get LevelSetDataPointerVector
      ENH: Rename LevelSetDataPointerVector -> LevelSetDomainRegionVector
      PERF: fix cppcheck issues in itk::ImageRegion
      STYLE: fix cppcheck style warning
      STYLE: fix cppcheck errors
      PERF: fix cppcheck perf warning
      PERF: cppcheck copy constructor
      PERF: fix cppcheck issues in itk::ImageRegion
      PERF: cppcheck performance issue
      COMP: fix cppcheck errors member not initialized in constructor
      STYLE: fix cppcheck style warning

Bill Lorensen (27):
      ENH: Reduce test times for Debug builds
      COMP: Bad CMake warning
      COMP: Resource leaks
      COMP: Resource leaks
      COMP: Uninitialized scalar variable
      COMP: Unbounded source buffer
      COMP: Destination buffer too small
      COMP: Destination buffer too small
      COMP: Resource leak
      COMP: Resource leak
      COMP: Big parameter passed by value
      COMP: Big parameter passed by value
      COMP: Copy-paste error
      COMP: Copy-paste error
      COMP: Copy-paste error
      COMP: Copy-paste error
      COMP: Copy-paste error
      COMP: Structurally dead code and resource leaks
      COMP: Big parameter passed by value
      COMP: Explicit null dereferenced
      COMP: Logically dead code
      COMP: Logically dead code
      COMP: Logically dead code
      COMP: Logically dead code
      COMP: Format string vulnerability
      COMP: Copy-paste error
      COMP: Dead code

Brad King (5):
      ENH: ExternalData: Do not re-stage staged object files
      MetaIO: Removed the deprecated _CM24 CMake variables
      COMP: Cleanup CMP0022 warnings in GDCM module
      COMP: Cleanup CMP0022 warnings in GDCM module static build
      BUG: Do not convert to make-escaped path for internal APIs

Bradley Lowekamp (55):
      COMP: Fix ambiguous specialization of GDCM Element
      ENH: Use Tiff version dependent field type enable LSM
      BUG: disable aligned attribute for GCC 4.1
      BUG: Prevent signed integer overflow in vnl urand_
      BUG: enable return value optimzation for VS debug mode
      BUG: increase the image tolerance for deformable test 5
      BUG: fix gradient recusive gaussian in VS debug
      BUG: in NthElementAdaptor pass by reference to modify argument
      BUG: disable aligned attribute for GCC 4.1
      BUG: Prevent signed integer overflow in vnl urand_
      BUG: enable return value optimzation for VS debug mode
      BUG: fix gradient recusive gaussian in VS debug
      BUG: in NthElementAdaptor pass by reference to modify argument
      ENH: Add option ENABLED_SHARED to itk_module for shared libraries
      ENH: Enabling shared IO modules on windows
      DOC: adding Examples directory to ITK Doxygen
      DOC: remove explicit doxygen example commands now automatically added
      BUG: add installation of Export headers
      BUG: Remove ENABLED_SHARED option for IOSpatialObjects module
      BUG: Fix linking of factory register method on static windows
      STYLE: Fix some style errors reported in continuous test
      BUG: Remove Spurious testing file
      COMP: Use relative path for generate output header parameter
      BUG: Enable slice-by-slice streaming for ShrinkImageFilter
      STYLE: Fix ShrinkImageStreamingTest style
      PERF: Flip filter use increment in scanline direction
      PERF: Additional FlipImageFilter performance by using input iterator
      PERF: Move test to IntegratedTest directory
      STYLE: fix typedef alignment
      ENH: Move validation to VerifyInputInformation
      ENH: Improve internal streaming for SliceBySliceImageFilter
      ENH: Enable a VectorImage to be used as displacement field
      BUG: Don't print null bias field
      ENH: Define print of null smart pointers
      BUG: Fix uninitialized m_Spacing in SignedMaurerDistance
      BUG: Fix uninitialized m_Spacing in SignedMaurerDistance
      BUG: Don't print null bias field
      BUG: Verify ConfidenceConnected Seeds
      BUG: Verify seeds in VectorConfidenceConnected
      ENH: Check and use C++11 typetraits first
      COMP: Use memcpy for raw memory copy
      BUG: Use string constructor which calculates str length
      BUG: fix out of bounds access of array
      ENH: Move private constant and method to private header
      ENH: Adding BinShrinkImageFilter.
      COMP: Fix warnings and missing include
      BUG: Fix Valrgrind detected delete mismatch
      ENH: improve coverage for SetShrinkFactor methods
      STYLE: running uncrustify and manual fixups
      ENH: Moving MRCImageIO out of review
      COMP: Fix gcc_xml segfault due to structure alignment
      ENH: adding wrapping support for BinShrink
      BUG: Add missing export specifiers for MRC module
      ENH: Move MRC wrapping out of review
      COMP: VS12 missing header in review

Brian Helba (45):
      DOC: Fix instances of class documentation outside itk namespace
      PERF: Discourage DomainThreader from spawning superfluous threads
      DOC: Cleanup docs for ThreadedDomainPartitioner and subclasses
      ENH: Implement ThreadedImageRegionPartitioner using ImageRegionSplitter
      STYLE: Unify style of "operator delete[]"
      STYLE: Remove superfluous return statements at the end of void functions
      STYLE: Fix miscellaneous KWStyle errors
      ENH: Remove superfluous IMMEDIATE option from CMake CONFIGURE_FILE
      STYLE: Replace Unicode in ITK source with ASCII homoglyphs
      ENH: Use MINC API to free memory allocated by MINC
      PERF: Allow delete of NULL pointers
      PERF: Refactor some deletion code
      ENH: Refactor KWStyle testing
      COMP: Make find_package usage compatible with < CMake-2.8.8
      BUG: Prevent CMake cache variable from endlessly accumulating values
      ENH: Rename Utilities/KWStyle/ITK.kws.xml.in to ITK.kws.xml
      DOC: Update Migration guide schema URL
      ENH: Rename ALL_MODULES to DEFAULT_MODULES
      STYLE: Fix class indentation
      BUG: Make KWStyleTest output in a uniform and concise format
      BUG: Update SmoothingRecursiveYvvGaussianFilter to fix CMake warning
      STYLE: Fix some indents in FixedArray::ReverseIterator declaration
      DOC: Fix issues in Transform and TransformBaseTemplate
      BUG: Make ImageIOBase::SetDirection accept const reference parameter
      BUG: Fix uninitialized variables in itkOpenCVBasicTypeBridgeTest
      DOC: Prevent concept checking comments from being parsed by Doxygen
      BUG: Prevent DCMTK from trying to build unnecessary components
      DOC: Update documentation graph font to avoid warnings
      DOC: Move an included STL file out of the itk namespace
      COMP: Fix warning C4789 from VisualStudio 11
      ENH: Add explicit KWStyle testing for Examples directory
      STYLE: Replace indentation tabs with spaces
      STYLE: Fix KWStyle issues in Examples: whitespace
      STYLE: Fix KWStyle issues in Examples: typedef alignment
      STYLE: Fix KWStyle issues in Examples: manual fixes
      BUG: Use KWStyle's GCC-style output for pre-commit style check
      STYLE: Remove trailing whitespace
      BUG: Make SCIFIO module non-default
      BUG: Fix memory leaks in MINCImageIO
      BUG: Fix ostream format modification warnings
      BUG: Fix uninitialized members of MINCImageIO
      DOC: Move Vector documentation from definition to declaration
      BUG: Resource leak
      ENH: Update CMake deprecated commands with new equivalents
      STYLE: Fix initialization list in BSplineBaseTransform constructor

C Cagatay Bilgin (1):
      DOC: Modify ShapeLabelObject comments.

Christina Rossmanith (1):
      BUG: enable itkLabelGeometryImageFilter to be used in loops

Constantine Zakkaroff (1):
      DOC: Correct DICOM Tag List Formatting

Cory Quammen (2):
      BUG: Enabled negative background values
      BUG: Fixed memory overusage in LandweberDeconvolutionImageFilter

Csaba Pinter (1):
      BUG: GDCM pixel spacing of ultrasound images.

Cyrille Faucheux (1):
      BUG: Fix support for RLE-compressed & upper-left BMP.

Daniel Maleike (3):
      BUG: Assert unchanged pixels only for non-PALETTE_COLOR images
      BUG: Add test case for GDCMImageIO
      BUG: Assert unchanged pixels only for non-PALETTE_COLOR images

Dirk Padfield (17):
      BUG: LabelGeometry cropped images with non-unit spacing incorrectly
      BUG: ProgressAccumulator reports incorrectly for streamed filters
      BUG: LabelGeometry matrix difference tolerance
      ENH: Added progress reporting to Masked FFT NCC
      BUG: LabelGeometry improvements
      BUG: Corrected the MaskedFFTNCC origin
      BUG: Resolved Otsu/OtsuMultiple Discrepancy
      ENH: Deprecated SetProgress and removed Modified call
      ENH: Deprecated SetProgress and removed Modified call
      BUG: ConstPointer assigned to non-const raw pointer
      ENH: Otsu code replaced with OtsuMultiple call
      BUG: ConstPointer assigned to non-const raw pointer
      ENH: Added valley emphasis algorithm to OtsuMultipleThresholds
      BUG: ReachedTargetPoints not set for OneTarget
      ENH: Remove duplicate code in BinaryBall and BinaryCross
      ENH: Added radiusIsParametric  mode to FlatStructuringElement
      ENH: Improved writing speed for TIFF images

Ethan Brodsky (1):
      BUG: fixedOrigin corrected in DeformableRegistration examples (ITK-3218)

Gordon Kindlmann (1):
      BUG: airOneLinify() infinite loop, synch w/ Teem for its 1.11.1 release

Hans Johnson (36):
      ENH: Add Remote Module for r/w of MGH files
      ENH: Provide instructions for linking to issues
      ENH: Feature to allow human readable object names
      BUG: Preserve backwards compatibility with types
      PERF: Optimizer scale caching and avoid copy
      ENH: Support single precision registration
      STYLE: Avoid polluting the ITK namespace
      STYLE: Simplify H5::Exception handeling
      STYLE: Replace expected exceptions with macro
      BUG: ImageSeriesWriter + GDCMImageIO loses info
      BUG: ImageSeriesWriter + GDCMImageIO loses info
      STYLE: ITK_EXPORT had no use
      BUG: Missing ',' in array of strings
      BUG: 'temp' used in exception message after delete
      BUG: Code after exceptions is unreachable
      BUG: Printing size of deleted variable
      BUG: Function should have const signature
      COMP: Remove unused variable
      COMP: Simplify code, and remove compiler warning
      STYLE: Use "typename" for template parameters
      COMP: Unused Clone and CreateAnother warnings
      STYLE: Prefer initialization to assignement.
      COMP: Const char * ternary operators
      BUG: Derived test class missing required logic
      PERF: Remove false sharing across threads
      PERF: Avoid smart pointer registration penalty
      PERF: Avoid vector copy, and prefer multiplication
      PERF: Reviewing code for facilitating compiler optimizations
      PERF: Avoid upcasting from float to double
      BUG: Match Convergence Window Precision
      COMP: Remove undefined complex types
      COMP: Remove undefined complex types
      COMP: Invalid conversion detected by clang c++11
      COMP: Non standard conversion for -std=c++11
      COMP: Allow single precision space definition
      COMP: Namespace change for SpacePrecisionType

Ho Cheung (6):
      BUG: VS11 Debug mode assertions fixes
      BUG: VS10/11 debug assertions for null pointer for std::copy
      BUG: VS11 Debug mode assertions fixes
      BUG: VS10/11 debug assertions for null pointer for std::copy
      ENH: Improve mangling of itktiff library.
      ENH: Improve mangling of itktiff library.

Irina Vidal-Migallon (3):
      ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter
      ENH: Remote module: GPU and CPU Smoothing recursive YVV Gaussian Filter
      ENH: YVV remote module - Add EXCLUDE_FROM_ALL option to itk_module.

Jean-Christophe Fillion-Robin (10):
      BUG: Disable aligned attribute to fix Apple GCC 4.2.1 seg fault
      COMP: Ensure FindDCMTK module works with and without
DCMTKConfig.cmake file
      COMP: Make FindDCMTK more verbose
      DOC: Improve FindDCMTK.cmake documentation
      COMP: Ensure DCMTK libraries can be found on system without
setting DCMTK_DIR
      COMP: FindDCMTK - Workaround bug in packaging of DCMTK 3.6.0 on Debian.
      COMP: Update ITKDCMTK_EXPORT_CODE_(BUILD|INSTALL) to support system DCMTK
      COMP: FindDCMTK - Exclude -D from DCMTK_DEFINITIONS for easier re-use
      COMP: FindDCMTK - Do not explicitly set DCMTK_DEFINITIONS
      COMP: Associate ITKIODCMTK with DCMTK_DEFINITIONS

Jim Miller (5):
      BUG: GDCMImageIO ignore image orienations from MetaDataDictionary
      BUG: Two tests were writing to same filename.
      BUG: GDCMImageIO ignore image orienations from MetaDataDictionary
      BUG: Two tests were writing to same filename.
      ENH: ResampleImageFilter ReferenceImage only needs to match dimension

Jonathan Guinet (2):
      BUG: {Opening,Closing}ByReconstructionImageFilter information propagation
      BUG: {Opening,Closing}ByReconstructionImageFilter information propagation

Julien Michel (1):
      ENH: Adding a separate template parameter to handle transform precision

KWSys Robot (1):
      KWSys 2013-07-10 (beef6819)

Kent Williams (22):
      ENH: fix std::string usage
      DOC: Rename DCMTKException DCMTKExceptionOrErrorReturn
      ENH: fix std::string usage
      BUG: Need to set 3rd dir cosine for DICOM images
      ENH: Accomodate Philips 4D Multiframe DICOM files
      BUG: Guard against Divide by Zero
      BUG: Row/Column assignment into ImageDimensions was wrong
      BUG: Guard against Divide by Zero
      BUG: Row/Column assignment into ImageDimensions was wrong
      ENH: Accomodate Philips 4D Multiframe DICOM files
      DOC: Rename DCMTKException DCMTKExceptionOrErrorReturn
      BUG: Need to set 3rd dir cosine for DICOM images
      COMP: Update git tag to incorporate MGHIO origin fix
      COMP: Move TransformFileWriter Specializations to CXX file.
      BUG: Bug fixed in remote MGHImageIO repo, update git tag
      BUG: argument check in LBFGSB too restrictive
      COMP: extend test for HistogramMatchingImageFilter to more pixel types
      COMP: HistogramMatchingFilterTest problem with ITKV3_COMPATIBILITY
      COMP: Make sscanf format & variable match types
      BUG: Fix tests that fail with Intel ICPC compiler on Linux
      ENH: Avoid use of cast in ImageToImageMetricV4
      BUG: DCMTKFileReader erroneously propogating exceptions

Kishore Mosaliganti (8):
      ENH: Allow visualization of initial level-set
      ENH: Add Set/GetNumberOfThreads for evolution
      ENH: New binary mask term with test
      ENH: Set/Get number of threads for Whitaker evolution class
      BUG: Non-square images mesh not specified correctly
      ENH: Set the scaling factor of the level-set function
      ENH: Added new overlap penalty term and test
      ENH: Level-set domains different from image domain

Luis Ibanez (7):
      STYLE: Fixed miscelaneous style errors.
      DOC: Removed Doxygen \example tags for Tests.
      COMP: Fix warnings in matrix division by scalar.
      COMP: Attempt to fix warning about \param.
      BUG: Fixed while loop condition.
      DOC: Better description of what the code is doing.
      BUG: Memory leak. Reported by Coverity.

Mark Hiner (5):
      BUG: Wrong classpath separator on Windows
      BUG: Wrong classpath separator on Windows
      ENH: Updated SCIFIO remote reference
      STYLE: update SCIFIO module name
      BUG: Update loci_tools to 4.4.9

Mark Palmeri (1):
      STYLE: correct syntax in Usage line

Martin Müllenhaupt (2):
      COMP: host platform source dir check
      COMP: host platform source dir check

Matt Clarkson (4):
      ENH: Test upper and lower bound of histogram.
      BUG: Include upper bound in last histogram bin.
      BUG: Updated mean and standard deviation test values.
      BUG: Update test data due to changes in itkHistogram.hxx

Matthew McCormick (107):
      ENH: Bump CMakeLists.txt version to 4.5.0.
      BUG: Remove non-existant GeSignaHDx data references.
      ENH: Add server URL to ArchiveTestingData script.
      ENH: Add slicer.kitware.com to the list of ExternalData resources.
      COMP: OpenJPEG #ifdef WIN32 not reliable ITK-3101.
      DOC: Improve grammar in transform float type migration guide.
      STYLE: Style fixes for MINCTransformIO.
      BUG: Remove non-existant GeSignaHDx data references.
      BUG: Regenerate HeaderTests' after .hxx files are removed.
      COMP: Update MINCTransformIO for templated transforms.
      COMP: Do not warn about unused typedefs.
      COMP: Fix argument 'buffer' might be clobbered on GCC 4.8.
      COMP: Wrap TransformBaseTemplate, Transform, and
TransformFile{Reader,Writer}.
      DOC: SingelThreaded -> SingleThreaded in Doxygen Group.
      ENH: Change PATCH version for v4.4.1 release.
      BUG: Add missing ITKOpenJPEG dependency for ITKReview Module.
      COMP: ITKOpenJPEG EXCLUDE_FROM_ALL.
      COMP: Fix invalid Doxygen LaTeX formula.
      BUG: Fix Module_Review enable with a single configure.
      COMP: Wrap cost functions for templated precision.
      BUG: Fix Module_Review enable with a single configure.
      DOC: Fix GradientDescentOptimizer doc grammar.
      BUG: Using consistent naming for Transform template name change.
      BUG: Remove unused QUASI_NEWTON_STEP_ERROR.
      COMP: Do not try to include float.h for MinGW.
      STYLE: TScalarType -> TScalar
      COMP: Fix NIFTI CMake variable separation warning.
      ENH: Use Transform::Clone() in ImageToImageMetric.
      COMP: Remove redundant Typename structs. #3195.
      STYLE: Fix include guard in level set visualization.
      ENH: Use file(COPY .. instead of exec_process.
      COMP: Fix transform wrapping errors with ITK_WRAP_double OFF.
      DOC: Fix spelling errors in FourierDescriptors1.cxx.
      BUG: Fix ITK_USE_REVIEW compatibility set syntax.
      COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.
      BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.
      ENH: Test conversion writing float transform with templateless writer.
      BUG: BMPImageIO buffer size computation.
      COMP: Bump GCCXML version.
      Revert "BUG: Exclude ITKReview when ITK_USE_REVIEW if off."
      Revert "BUG: Exclude ITKReview when ITK_USE_REVIEW if off."
      COMP: Do not try to include float.h for MinGW.
      BUG: itkSingleLevelSetsv4WhitakerImage2DTest output clobber.
      COMP: Avoid MetaIO config conflict with USE_SYSTEM_GDCM.
      COMP: Bump GCCXML version.
      ENH: Bump version to 4.4.2.
      COMP: Fix LevelSetsv4Visualization against VTK5.
      BUG: Fix LevelSetsv4Visualization Doxygen group.
      BUG: Add QuickViewTest baseline for dash5ubuntu.
      BUG: Exclude all VTK headers from the header test.
      ENH: Improve ImageRegionReverseConstIterator doc.
      COMP: Add missing wrapping for ImageSourceCommon.
      COMP: Add missing VectorContainer instantiations for PointSet.
      STYLE: Use prefix increment in WeightedCovarianceSampleFilter.
      STYLE: LabelMap related style fixes.
      BUG: LabelMapToLabelImageFilter wrong superclass in itkTypeMacro.
      BUG: MeasurementVectorSizeType in PointSetToListSampleAdaptor.
      BUG: Re-use Superclass typedef's in LabelMapToLabelImageFilter.
      COMP: TranformIOBase unused GetTypeNameString function.
      COMP: TransformFileWriter unused AddToTransformList.
      STYLE: Fix KWStyleCodeTest - unnecessary semi-colons.
      COMP: Update MINCTransformIO for GetTypeNameString method.
      BUG: Fix uninitialized variables in N4BiasFieldCorrectionImageFilter.
      ENH: Remove unused scripts in Utilities/Dart.
      BUG: Fix uninitialized variables in N4BiasFieldCorrectionImageFilter.
      ENH: Add maintenance script to visualize test times.
      ENH: Add a RUNS_LONG label to long running tests.
      BUG: Enable MRC IO in UseITK whenever the ITKReview module is enabled.
      BUG: Fix Wrapping link to VtkGlue with VTK 6.
      COMP: Remove multiple definition of PushBackTransformList.
      COMP: Fix NIFTI CMake variable separation warning.
      BUG: ImageToImageFilter different Input2 pixel type does not stream. #3214
      COMP: Clean up use of Dimensions in MetaImageIO.
      COMP: Conditionalize insane "#define inline" in libtiff
      COMP: QuadrilateralCell Out-of-bounds-write.
      COMP: Out-of-bounds access GaussianDerivativeImageFunction.
      ENH: Use CompensatedSummation in GaussianDerivativeImageFunction.
      ENH: Improve const correctness of QuadrilateralCell.
      BUG: Add double-conversion license.
      ENH: Add check for LICENSE change on double-conversion update.
      BUG: Fix removal of temporary double-conversion repository.
      COMP: Catch TestDriver ExceptionObject.
      BUG: Add missing OpenJPEG LICENSE file.
      BUG: Add missing PNG license.
      BUG: AntiAliasBinaryImageFilter needs SetUseImageSpacing(false).
      DOC: Flat refers to binary in FlatStructuringElement.
      BUG: Examples should not have namespace KWStyle check.
      DOC: Recommend newer BSplineTransform over BSplineDeformableTransform.
      COMP: Do not warn about unused typedefs.
      BUG: 14th Ann Incorrect enum declaration.
      COMP: 14th Ann uninitialized scalar field.
      STYLE: Empty lines exceed 3.
      COMP: 14th Ann operator= should return TreeIteratorBase &
      BUG: Incorrect CDash URL in CTestConfig.cmake.
      DOC: Remove reference to missing AddFileNames method.
      COMP: TIFFImageIO: use types defined in itkIntTypes.h.
      COMP: 14th Ann Uninitialized pointer field.
      COMP: 14th Ann m_ChangePosition not initialized in constructor.
      PERF: 14th Ann TreeNode: prefer prefix ++/--
      COMP: 14th Ann *Command m_This not initialized.
      STYLE: 14th Ann Reduce variable scope.
      STYLE: 14th Ann reduce scope of variables.
      STYLE: 14th Ann operator= return Self &.
      PERF: 14th Ann prefix ++ operator on non-primative types.
      STYLE: 14th Ann reduce variable scope.
      ENH: Bump GCCXML to latest version.
      ENH: Update doxygen.config for 1.8.5.

Mickael Savinaud (1):
      COMP: fix compiler error from visual studio 2013

Nick Tustison (2):
      ENH:  Added B-spline registration test.
      ENH:  Accessing optimizer weights from the methods.

Olivier Commowick (4):
      COMP: Add cmake tr1 namespace check for macos clang
      COMP: Use ZeroValue instead of Zero for clang macos 10.9 compilation
      COMP: Use ZeroValue instead of Zero for clang macos 10.9 compilation
      COMP: Add cmake tr1 namespace check for macos clang

Pew-Thian Yap (1):
      BUG: Defined equality and inequality operators.

Sean McBride (1):
      COMP: Fixed compiler error in C++11

Simon Alexander (1):
      COMP: compilation failures encountered with Visual Studio 2013

Stephen Aylward (7):
      BUG: Fixed bugs in Form and hidden virtual funcs in Image
      COMP: Fixed unused variable warnings in tests
      COMP: Disable tests since paths are set wrong in VTK
      BUG: Fixed bugs in Form and hidden virtual funcs in Image
      COMP: Fixed unused variable warnings in tests
      COMP: Disable tests since paths are set wrong in VTK
      COMP: Fix warnings from VTK dashboard, contributed by Sean McBride

Sureerat Reaungamornrat (1):
      ENH: Make SetFixedImageRegion a virtual function

Taylor Braun-Jones (1):
      COMP: Remove unused TransformFileWriter::m_Precision ivar

Tobias Maier (2):
      BUG: VTKImageIO did not respect endianness for streamed writing/reading
      BUG: Uninitialized value in VTKImageIOStreamTest

Vladimir S. FONOV (6):
      BUG: Fixing small bugs in MINC IO Module
      COMP: Fixed building review statistics with gcc 4.7.
      BUG: Fixed bugs in Modules/IO/MINC and Modules/ThirdParty/MINC
      ENH: Added adapter class to use general_transform API from MINC
      ENH: Added adapter class to use general_transform API from MINC
      BUG: Fixed error handling in MINC IO

Xiaoxiao Liu (30):
      DOC: Add a comment for "ITK_Common_EXPORTS"
      ENH: Add a unit test for VectorImageToImageAdaptor.
      COMP: Relax tolerance for a regression test.
      ENH: Exclude ITKGDCM module when system GDCM is ON.
      BUG: Exclude ITKReview when ITK_USE_REVIEW if off.
      BUG: A fix for using sys installed GDCM.
      BUG: ITK_USE_Review did not turn Review module ON.
      ENH: Simplify the steps to build remote modules.
      ENH: Turn remote module LSTK off by default.
      ENH: Deprecate ITK_USE_REVIEW.
      DOC: Migration guide for ITK_USE_REVIEW deprecation.
      ENH: Remote module names need to be consistent.
      COMP: New baseline image for MultiResImageRegistrationTest.
      PERF: Remove redundant CMake variables.
      DOC: Sort the module enabling messages by names.
      ENH: Exclude ITKGDCM module when system GDCM is ON.
      BUG: A fix for using sys installed GDCM.
      COMP: New baseline image for MultiResImageRegistrationTest.
      ENH: Remove "ITK" prefix from remote modules.
      BUG: Update LSTK module tag.
      STYLE: Extract module dependency code to a separate file.
      COMP: Fix LSTK warning.
      COMP: Fix cmake warnings on EXCLUDE_FROM_ALL.
      DOC: Better warning message for ITK_BUILD_ALL_MODULES.
      BUG: Coverity resrouce leak in itkQuadEdgeTest1.
      COMP: Fix coverity bug in itkQuadEdgeTest.
      BUG: Resource leak in testMetaObject.cxx.
      COMP: Coverity scan resource leak in itkQuadEdgeTest.
      BUG: Fix typos in globalIndexNames.
      BUG: Fix typos in globalIndexNames.


List of changes in ITKApps since v4.4.0-apps
------------------------------------------------------------

Bill Lorensen (1):
      ENH: Bump ITK version to 4.5.0

Matt McCormick (4):
      COMP: Add missing header to MIMApplicationBase.txx.
      COMP: Add missing this-> to derived method calls.
      STYLE: LandmarkRegistrator: whitespace towards ITK Style.
      COMP: Better use of typedefs in LandmarkRegistrator.


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