[Insight-users] Duplicate symbols from OpenJPEG with system GDCM and ITK 4.4

[Xiaoxiao Liu]

and this one to exclude ITKReview from building when ITK_USE_REVIEW is
turned OFF:
http://review.source.kitware.com/#/c/12084/


On Wed, Jul 24, 2013 at 1:58 PM, Xiaoxiao Liu <xiaoxiao.liu at kitware.com>wrote:

> Will this help?
> http://review.source.kitware.com/#/c/12083/
>
>
>
> On Wed, Jul 24, 2013 at 12:47 PM, Simon Rit <
> simon.rit at creatis.insa-lyon.fr> wrote:
>
>> Thanks! But itt's not sufficient. The cmake command gives
>> -- Enabled ITKOpenJPEG, needed by [ITKGDCM].
>>
>> I have been a bit further. If I manually remove the dependency to
>> OpenJPEG:
>> diff --git a/Modules/ThirdParty/GDCM/itk-module.cmake
>> b/Modules/ThirdParty/GDCM/itk-module.cmake
>> index 37ba9e4..c67a8f5 100644
>> --- a/Modules/ThirdParty/GDCM/itk-module.cmake
>> +++ b/Modules/ThirdParty/GDCM/itk-module.cmake
>> @@ -6,7 +6,6 @@ itk_module(ITKGDCM
>>    DEPENDS
>>      ITKZLIB
>>      ITKExpat
>> -    ITKOpenJPEG
>>    DESCRIPTION
>>      "${DOCUMENTATION}"
>>  )
>>
>> I get :
>> /Users/srit/src/itk4/itk/Modules/Nonunit/Review/src/itkJPEG2000ImageIO.cxx:29:12:
>> fatal error:
>>       'openjpeg.h' file not found
>>   #include "openjpeg.h"
>>
>> I'm quite surprised because ITK_USE_REVIEW and BUILD_TESTING are OFF...
>> Anyway, I ignored this (make -k) and I can then compile my software. So the
>> dependency to ITKOpenJPEG would have to be removed in ITKGDCM if
>> ITK_USE_SYSTEM_GDCM is ON.
>>
>> As a side note, I tried to remove the compilation of the module ITKGDCM
>> but that failed. I also tried to use gdcm as described in its documentation
>> but that failed too:
>>
>> diff --git a/Modules/ThirdParty/GDCM/itk-module-init.cmake
>> b/Modules/ThirdParty/GDCM/itk-module-init.cmak
>> index c04c639..90cea5f 100644
>> --- a/Modules/ThirdParty/GDCM/itk-module-init.cmake
>> +++ b/Modules/ThirdParty/GDCM/itk-module-init.cmake
>> @@ -3,4 +3,5 @@ mark_as_advanced(ITK_USE_SYSTEM_GDCM)
>>
>>  if(ITK_USE_SYSTEM_GDCM)
>>    find_package(GDCM REQUIRED)
>> +  include(${GDCM_USE_FILE})
>>  endif()
>>
>> I hope this (mess) helps...
>> Simon
>>
>>
>> On Wed, Jul 24, 2013 at 5:43 PM, Matt McCormick <
>> matt.mccormick at kitware.com> wrote:
>>
>>> Hi Simon,
>>>
>>> Please try this patch:
>>>
>>>   http://review.source.kitware.com/#/c/12078/
>>>
>>> Thanks,
>>> Matt
>>>
>>> On Wed, Jul 24, 2013 at 9:40 AM, Simon Rit
>>> <simon.rit at creatis.insa-lyon.fr> wrote:
>>> > Hi,
>>> > I am trying to build an application (http://vv.creatis.insa-lyon.fr/)
>>> under
>>> > MacOS with system GDCM (latest version from git) and ITK 4.4. At link
>>> time,
>>> > I get duplicate symbol errors because itk and gdcm both compile
>>> openjpeg,
>>> > for example :
>>> >
>>> > duplicate symbol _j2k_convert_progression_order in:
>>> >     /Users/srit/src/itk4/mac64/lib/libitkopenjpeg-4.4.a(j2k.c.o)
>>> >     /Users/srit/src/gdcm/mac64-install/lib/libgdcmopenjpeg.a(j2k.c.o)
>>> >
>>> > I did not find an easy way to fix this. Is there a way to disable the
>>> build
>>> > of OpenJPEG when gdcm system is used? No matter what I do, the module
>>> > ITKOpenJPEG is built when ITK IOs are built...
>>> > Thanks in advance,
>>> > Simon
>>> >
>>> > _____________________________________
>>> > Powered by www.kitware.com
>>> >
>>> > Visit other Kitware open-source projects at
>>> > http://www.kitware.com/opensource/opensource.html
>>> >
>>> > Kitware offers ITK Training Courses, for more information visit:
>>> > http://www.kitware.com/products/protraining.php
>>> >
>>> > Please keep messages on-topic and check the ITK FAQ at:
>>> > http://www.itk.org/Wiki/ITK_FAQ
>>> >
>>> > Follow this link to subscribe/unsubscribe:
>>> > http://www.itk.org/mailman/listinfo/insight-users
>>> >
>>>
>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
>>
>>
>
>
> --
>
>
> ---------------------------------------------
> *Xiaoxiao Liu*, Ph.D.
> R & D Engineer
> Kitware Inc <http://www.kitware.com/>.
> Clifton Park, NY
> Phone: (518) 881-4924  or  (518) 371-3971 x124
>
>


-- 


---------------------------------------------
*Xiaoxiao Liu*, Ph.D.
R & D Engineer
Kitware Inc <http://www.kitware.com/>.
Clifton Park, NY
Phone: (518) 881-4924  or  (518) 371-3971 x124
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.itk.org/pipermail/insight-users/attachments/20130724/45cdd99c/attachment.htm>