[Insight-users] cannot open DICOM with ITK 4.3.1

[Luca Tersi]

Has anybody tried to read my image file (available
here<https://dl.dropboxusercontent.com/u/9312078/frame0001.dcm>)?

Do you think my problem is related to the image itself or to my ITK
compilation?

Thanks

Luca


---
----------------------------------------------------------------------------------------------------------


On 21 May 2013 17:35, Luca Tersi <lucatersi at gmail.com> wrote:

> Ok, you can download it from here<https://dl.dropboxusercontent.com/u/9312078/frame0001.dcm>
> .
> It is part of a DICOM series already processed and saved with ITK.
> Thanks for your help.
> L
>
>
> ---
>
> ----------------------------------------------------------------------------------------------------------
>
>
> On 21 May 2013 17:22, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>
>> The compiler should not matter.
>>
>> Can you share a dicom file that you cannot open?
>>
>>
>> On Tue, May 21, 2013 at 11:14 AM, Luca Tersi <lucatersi at gmail.com> wrote:
>>
>>> Dear Bill,
>>>
>>> I finally managed to test my code on a Windows platform (MinGW) using
>>> ITK 4.3.2 and everything seems to work properly.
>>> I tried again on linux and both 4.3.1 and 4.3.2 do not work.
>>>
>>> Might it be a compiler related issue? (gcc 4.8 on linux and 4.7 on
>>> windows)
>>>
>>> Thanks a lot
>>>
>>> Luca
>>>
>>>
>>>
>>> ---
>>>
>>> ----------------------------------------------------------------------------------------------------------
>>>
>>>
>>> On 21 April 2013 00:50, Luca Tersi <lucatersi at gmail.com> wrote:
>>>
>>>> Yes, it could be read. I can switch between 4.3.1 and 4.2.1 (same cmake
>>>> settings): I can open any DICOM file with 4.2.1 but not with 4.3.1. Maybe
>>>> I'm missing something..
>>>> Thanks a lot
>>>> Luca
>>>>
>>>> PS. I'm working on Linux Manjaro 64-bit, next week I will try to run it
>>>> on Windows
>>>>
>>>>
>>>> ---
>>>>
>>>> ----------------------------------------------------------------------------------------------------------
>>>>
>>>>
>>>> On 19 April 2013 21:09, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>>
>>>>> Are you saying the same file could be read prior to the upgrade?
>>>>>
>>>>>
>>>>>
>>>>> On Wed, Apr 17, 2013 at 5:26 AM, Luca Tersi <lucatersi at gmail.com>wrote:
>>>>>
>>>>>> Dear all,
>>>>>>
>>>>>> I've been using ITK and VTK for a while, but after a recent upgrade
>>>>>> to ITK4.3.1, I cannot open DICOM series or single .dcm files. I obtain the
>>>>>> following exception:
>>>>>>
>>>>>>
>>>>>> itk::ExceptionObject (0x2a12eb0)
>>>>>>
>>>>>> Location: "unknown"
>>>>>>
>>>>>> File:
>>>>>> /home/lt/Work/FLUORO/kitware/ITK4.3.1_src/Modules/IO/GDCM/src/itkGDCMImageIO.cxx
>>>>>>
>>>>>> Line: 335
>>>>>>
>>>>>> Description: itk::ERROR: GDCMImageIO(0x3180830): Cannot read
>>>>>> requested file
>>>>>>
>>>>>>
>>>>>>
>>>>>> This is my code:
>>>>>>
>>>>>>  QString filename = QFileDialog::getOpenFileName(currentDir, "*",
>>>>>> this, "Open file dialog", "Choose Input DICOM File" );
>>>>>>   if ( filename.length()  == 0 )
>>>>>>     {
>>>>>>       cout<<"aborted"<<endl;
>>>>>>       return;
>>>>>>     }
>>>>>>
>>>>>>   typedef itk::Image< IntPixelType, voxelDimension >
>>>>>> IntVolumeType;
>>>>>>   typedef itk::ImageFileReader< IntVolumeType >
>>>>>> IntVolumeReaderType;
>>>>>>   IntVolumeReaderType::Pointer reader=IntVolumeReaderType::New();
>>>>>>   reader->SetFileName ( filename.latin1() );
>>>>>>   ImageIOType::Pointer gdcmImageIO = ImageIOType::New();
>>>>>>   reader->SetImageIO ( gdcmImageIO );
>>>>>>
>>>>>>   try
>>>>>>   {
>>>>>>     reader->Update();
>>>>>>   }
>>>>>>   catch ( itk::ExceptionObject & excp )
>>>>>>   {
>>>>>>     std::cerr << "Error reading the images " << std::endl;
>>>>>>     std::cerr << excp << std::endl;
>>>>>>     return;
>>>>>>   }
>>>>>>
>>>>>>
>>>>>>
>>>>>>
>>>>>> If I do not specify any IO object (it was working with ITK4.2.1) I
>>>>>> get:
>>>>>>
>>>>>> itk::ImageFileReaderException (0x13a7510)
>>>>>>
>>>>>> Location: "void itk::ImageFileReader<TOutputImage,
>>>>>> ConvertPixelTraits>::GenerateOutputInformation() [with TOutputImage =
>>>>>> itk::Image<short unsigned int, 3u>; ConvertPixelTraits =
>>>>>> itk::DefaultConvertPixelTraits<short unsigned int>]"
>>>>>>
>>>>>> File:
>>>>>> /home/lt/Work/FLUORO/kitware/ITK4.3.1_src/Modules/IO/ImageBase/include/itkImageFileReader.hxx
>>>>>>
>>>>>> Line: 143
>>>>>>
>>>>>> Description: Could not create IO object for file
>>>>>> /run/media/lt/CODONICS/DICOM/ST000000/SE000015/XA000000
>>>>>>
>>>>>> Tried to create one of the following:
>>>>>>
>>>>>> JPEGImageIO
>>>>>>
>>>>>> GDCMImageIO
>>>>>>
>>>>>> BMPImageIO
>>>>>>
>>>>>> LSMImageIO
>>>>>>
>>>>>> PNGImageIO
>>>>>>
>>>>>> TIFFImageIO
>>>>>>
>>>>>> VTKImageIO
>>>>>>
>>>>>> StimulateImageIO
>>>>>>
>>>>>> BioRadImageIO
>>>>>>
>>>>>> MetaImageIO
>>>>>>
>>>>>> NiftiImageIO
>>>>>>
>>>>>> NrrdImageIO
>>>>>>
>>>>>> GiplImageIO
>>>>>>
>>>>>> HDF5ImageIO
>>>>>>
>>>>>> You probably failed to set a file suffix, or
>>>>>>
>>>>>> set the suffix to an unsupported type.
>>>>>>
>>>>>> Is anybody having the same issue? Do you have any hints?
>>>>>>
>>>>>> Thanks in advance
>>>>>>
>>>>>> Luca
>>>>>> ---
>>>>>>
>>>>>> *Luca Tersi, Ph.D.*
>>>>>> *Health Sciences and Technologies - Interdepartmental Center for
>>>>>> Industrial Research (HST - ICIR) *
>>>>>> *Alma Mater Studiorum - University of Bologna; *Via Cavalcavia 797,
>>>>>> I-47521 Cesena (FC) - Italy
>>>>>>
>>>>>> ----------------------------------------------------------------------------------------------------------
>>>>>>
>>>>>>
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>>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> Unpaid intern in BillsBasement at noware dot com
>>>>>
>>>>
>>>>
>>>
>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>>
>
>
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