[Insight-users] cannot open DICOM with ITK 4.3.1

[Luca Tersi]

Dear Bill,

I finally managed to test my code on a Windows platform (MinGW) using ITK
4.3.2 and everything seems to work properly.
I tried again on linux and both 4.3.1 and 4.3.2 do not work.

Might it be a compiler related issue? (gcc 4.8 on linux and 4.7 on windows)

Thanks a lot

Luca



---
----------------------------------------------------------------------------------------------------------


On 21 April 2013 00:50, Luca Tersi <lucatersi at gmail.com> wrote:

> Yes, it could be read. I can switch between 4.3.1 and 4.2.1 (same cmake
> settings): I can open any DICOM file with 4.2.1 but not with 4.3.1. Maybe
> I'm missing something..
> Thanks a lot
> Luca
>
> PS. I'm working on Linux Manjaro 64-bit, next week I will try to run it on
> Windows
>
>
> ---
>
> ----------------------------------------------------------------------------------------------------------
>
>
> On 19 April 2013 21:09, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>
>> Are you saying the same file could be read prior to the upgrade?
>>
>>
>>
>> On Wed, Apr 17, 2013 at 5:26 AM, Luca Tersi <lucatersi at gmail.com> wrote:
>>
>>> Dear all,
>>>
>>> I've been using ITK and VTK for a while, but after a recent upgrade to
>>> ITK4.3.1, I cannot open DICOM series or single .dcm files. I obtain the
>>> following exception:
>>>
>>>
>>> itk::ExceptionObject (0x2a12eb0)
>>>
>>> Location: "unknown"
>>>
>>> File:
>>> /home/lt/Work/FLUORO/kitware/ITK4.3.1_src/Modules/IO/GDCM/src/itkGDCMImageIO.cxx
>>>
>>> Line: 335
>>>
>>> Description: itk::ERROR: GDCMImageIO(0x3180830): Cannot read requested
>>> file
>>>
>>>
>>>
>>> This is my code:
>>>
>>>  QString filename = QFileDialog::getOpenFileName(currentDir, "*", this,
>>> "Open file dialog", "Choose Input DICOM File" );
>>>   if ( filename.length()  == 0 )
>>>     {
>>>       cout<<"aborted"<<endl;
>>>       return;
>>>     }
>>>
>>>   typedef itk::Image< IntPixelType, voxelDimension >
>>> IntVolumeType;
>>>   typedef itk::ImageFileReader< IntVolumeType >
>>> IntVolumeReaderType;
>>>   IntVolumeReaderType::Pointer reader=IntVolumeReaderType::New();
>>>   reader->SetFileName ( filename.latin1() );
>>>   ImageIOType::Pointer gdcmImageIO = ImageIOType::New();
>>>   reader->SetImageIO ( gdcmImageIO );
>>>
>>>   try
>>>   {
>>>     reader->Update();
>>>   }
>>>   catch ( itk::ExceptionObject & excp )
>>>   {
>>>     std::cerr << "Error reading the images " << std::endl;
>>>     std::cerr << excp << std::endl;
>>>     return;
>>>   }
>>>
>>>
>>>
>>>
>>> If I do not specify any IO object (it was working with ITK4.2.1) I get:
>>>
>>> itk::ImageFileReaderException (0x13a7510)
>>>
>>> Location: "void itk::ImageFileReader<TOutputImage,
>>> ConvertPixelTraits>::GenerateOutputInformation() [with TOutputImage =
>>> itk::Image<short unsigned int, 3u>; ConvertPixelTraits =
>>> itk::DefaultConvertPixelTraits<short unsigned int>]"
>>>
>>> File:
>>> /home/lt/Work/FLUORO/kitware/ITK4.3.1_src/Modules/IO/ImageBase/include/itkImageFileReader.hxx
>>>
>>> Line: 143
>>>
>>> Description: Could not create IO object for file
>>> /run/media/lt/CODONICS/DICOM/ST000000/SE000015/XA000000
>>>
>>> Tried to create one of the following:
>>>
>>> JPEGImageIO
>>>
>>> GDCMImageIO
>>>
>>> BMPImageIO
>>>
>>> LSMImageIO
>>>
>>> PNGImageIO
>>>
>>> TIFFImageIO
>>>
>>> VTKImageIO
>>>
>>> StimulateImageIO
>>>
>>> BioRadImageIO
>>>
>>> MetaImageIO
>>>
>>> NiftiImageIO
>>>
>>> NrrdImageIO
>>>
>>> GiplImageIO
>>>
>>> HDF5ImageIO
>>>
>>> You probably failed to set a file suffix, or
>>>
>>> set the suffix to an unsupported type.
>>>
>>> Is anybody having the same issue? Do you have any hints?
>>>
>>> Thanks in advance
>>>
>>> Luca
>>> ---
>>>
>>> *Luca Tersi, Ph.D.*
>>> *Health Sciences and Technologies - Interdepartmental Center for
>>> Industrial Research (HST - ICIR) *
>>> *Alma Mater Studiorum - University of Bologna; *Via Cavalcavia 797,
>>> I-47521 Cesena (FC) - Italy
>>>
>>> ----------------------------------------------------------------------------------------------------------
>>>
>>>
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>>
>>
>> --
>> Unpaid intern in BillsBasement at noware dot com
>>
>
>
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