[Insight-users] cannot open DICOM with ITK 4.3.1

Tue May 21 11:35:44 EDT 2013

Ok, you can download it from
here<https://dl.dropboxusercontent.com/u/9312078/frame0001.dcm>
.
It is part of a DICOM series already processed and saved with ITK.
Thanks for your help.
L

---
----------------------------------------------------------------------------------------------------------

On 21 May 2013 17:22, Bill Lorensen <bill.lorensen at gmail.com> wrote:

> The compiler should not matter.
>
> Can you share a dicom file that you cannot open?
>
>
> On Tue, May 21, 2013 at 11:14 AM, Luca Tersi <lucatersi at gmail.com> wrote:
>
>> Dear Bill,
>>
>> I finally managed to test my code on a Windows platform (MinGW) using ITK
>> 4.3.2 and everything seems to work properly.
>> I tried again on linux and both 4.3.1 and 4.3.2 do not work.
>>
>> Might it be a compiler related issue? (gcc 4.8 on linux and 4.7 on
>> windows)
>>
>> Thanks a lot
>>
>> Luca
>>
>>
>>
>> ---
>>
>> ----------------------------------------------------------------------------------------------------------
>>
>>
>> On 21 April 2013 00:50, Luca Tersi <lucatersi at gmail.com> wrote:
>>
>>> Yes, it could be read. I can switch between 4.3.1 and 4.2.1 (same cmake
>>> settings): I can open any DICOM file with 4.2.1 but not with 4.3.1. Maybe
>>> I'm missing something..
>>> Thanks a lot
>>> Luca
>>>
>>> PS. I'm working on Linux Manjaro 64-bit, next week I will try to run it
>>> on Windows
>>>
>>>
>>> ---
>>>
>>> ----------------------------------------------------------------------------------------------------------
>>>
>>>
>>> On 19 April 2013 21:09, Bill Lorensen <bill.lorensen at gmail.com> wrote:
>>>
>>>> Are you saying the same file could be read prior to the upgrade?
>>>>
>>>>
>>>>
>>>> On Wed, Apr 17, 2013 at 5:26 AM, Luca Tersi <lucatersi at gmail.com>wrote:
>>>>
>>>>> Dear all,
>>>>>
>>>>> I've been using ITK and VTK for a while, but after a recent upgrade to
>>>>> ITK4.3.1, I cannot open DICOM series or single .dcm files. I obtain the
>>>>> following exception:
>>>>>
>>>>>
>>>>> itk::ExceptionObject (0x2a12eb0)
>>>>>
>>>>> Location: "unknown"
>>>>>
>>>>> File:
>>>>> /home/lt/Work/FLUORO/kitware/ITK4.3.1_src/Modules/IO/GDCM/src/itkGDCMImageIO.cxx
>>>>>
>>>>> Line: 335
>>>>>
>>>>> Description: itk::ERROR: GDCMImageIO(0x3180830): Cannot read requested
>>>>> file
>>>>>
>>>>>
>>>>>
>>>>> This is my code:
>>>>>
>>>>>  QString filename = QFileDialog::getOpenFileName(currentDir, "*",
>>>>> this, "Open file dialog", "Choose Input DICOM File" );
>>>>>   if ( filename.length()  == 0 )
>>>>>     {
>>>>>       cout<<"aborted"<<endl;
>>>>>       return;
>>>>>     }
>>>>>
>>>>>   typedef itk::Image< IntPixelType, voxelDimension >
>>>>> IntVolumeType;
>>>>>   typedef itk::ImageFileReader< IntVolumeType >
>>>>> IntVolumeReaderType;
>>>>>   IntVolumeReaderType::Pointer reader=IntVolumeReaderType::New();
>>>>>   reader->SetFileName ( filename.latin1() );
>>>>>   ImageIOType::Pointer gdcmImageIO = ImageIOType::New();
>>>>>   reader->SetImageIO ( gdcmImageIO );
>>>>>
>>>>>   try
>>>>>   {
>>>>>     reader->Update();
>>>>>   }
>>>>>   catch ( itk::ExceptionObject & excp )
>>>>>   {
>>>>>     std::cerr << "Error reading the images " << std::endl;
>>>>>     std::cerr << excp << std::endl;
>>>>>     return;
>>>>>   }
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> If I do not specify any IO object (it was working with ITK4.2.1) I get:
>>>>>
>>>>> itk::ImageFileReaderException (0x13a7510)
>>>>>
>>>>> Location: "void itk::ImageFileReader<TOutputImage,
>>>>> ConvertPixelTraits>::GenerateOutputInformation() [with TOutputImage =
>>>>> itk::Image<short unsigned int, 3u>; ConvertPixelTraits =
>>>>> itk::DefaultConvertPixelTraits<short unsigned int>]"
>>>>>
>>>>> File:
>>>>> /home/lt/Work/FLUORO/kitware/ITK4.3.1_src/Modules/IO/ImageBase/include/itkImageFileReader.hxx
>>>>>
>>>>> Line: 143
>>>>>
>>>>> Description: Could not create IO object for file
>>>>> /run/media/lt/CODONICS/DICOM/ST000000/SE000015/XA000000
>>>>>
>>>>> Tried to create one of the following:
>>>>>
>>>>> JPEGImageIO
>>>>>
>>>>> GDCMImageIO
>>>>>
>>>>> BMPImageIO
>>>>>
>>>>> LSMImageIO
>>>>>
>>>>> PNGImageIO
>>>>>
>>>>> TIFFImageIO
>>>>>
>>>>> VTKImageIO
>>>>>
>>>>> StimulateImageIO
>>>>>
>>>>> BioRadImageIO
>>>>>
>>>>> MetaImageIO
>>>>>
>>>>> NiftiImageIO
>>>>>
>>>>> NrrdImageIO
>>>>>
>>>>> GiplImageIO
>>>>>
>>>>> HDF5ImageIO
>>>>>
>>>>> You probably failed to set a file suffix, or
>>>>>
>>>>> set the suffix to an unsupported type.
>>>>>
>>>>> Is anybody having the same issue? Do you have any hints?
>>>>>
>>>>> Thanks in advance
>>>>>
>>>>> Luca
>>>>> ---
>>>>>
>>>>> *Luca Tersi, Ph.D.*
>>>>> *Health Sciences and Technologies - Interdepartmental Center for
>>>>> Industrial Research (HST - ICIR) *
>>>>> *Alma Mater Studiorum - University of Bologna; *Via Cavalcavia 797,
>>>>> I-47521 Cesena (FC) - Italy
>>>>>
>>>>> ----------------------------------------------------------------------------------------------------------
>>>>>
>>>>>
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>>>>>
>>>>
>>>>
>>>> --
>>>> Unpaid intern in BillsBasement at noware dot com
>>>>
>>>
>>>
>>
>
>
> --
> Unpaid intern in BillsBasement at noware dot com
>
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