[ITK-users] Issue installing SimpleITK via conda-recipe

Thu Oct 23 09:00:13 EDT 2014

Hi Brad,

Find attached the CMakeCache.txt from ./anaconda/conda-bld/work/build
In this file it seems that,
ITK_USE_SYSTEM_TIFF:BOOL=ON

Does it mean that the TIFF used is from the anaconda "system"? I assume
that I have to try to put the boolean to OFF to use the one of ITK.

Thanks,

On 23 October 2014 14:52, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:

> Hello,
>
> Can you please send me you CMakeCache.txt file from the build directory.
>
> The simplest thing to do may be to remote using the anaconda "system" tiff
> library and just use the one ITK has. This can be done by modifying the
> conda recipe build script here [1].
>
> Most likely there is some confusion which occurs during the CMake
> configuration about which tiff library to use.
>
> Brad
>
> [1]
> https://github.com/conda/conda-recipes/blob/master/simpleitk/build.sh#L35
>
> On Oct 23, 2014, at 4:43 AM, Guillaume Lemaître <g.lemaitre58 at gmail.com>
> wrote:
>
> Hi all,
>
> First, I am a newbie in Python and anaconda and sorry in advance if things
> seems trivial
> I tried to install SimpleITK through conda-recipe. The installation by
> itself seems to be fined but the test is failling:
>
> ==== testing package: simpleitk-0.8.0.post29-py27_0 =====
> import: u'SimpleITK'
> Traceback (most recent call last):
>   File "/home/lemaitre/anaconda/conda-bld/test-tmp_dir/run_test.py", line
> 25, in <module>
>     import SimpleITK
>   File
> "/home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/__init__.py",
> line 1, in <module>
>     from .SimpleITK import *
>   File
> "/home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/SimpleITK.py",
> line 28, in <module>
>     _SimpleITK = swig_import_helper()
>   File
> "/home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/SimpleITK.py",
> line 24, in swig_import_helper
>     _mod = imp.load_module('_SimpleITK', fp, pathname, description)
> ImportError:
> /home/lemaitre/anaconda/envs/_test/lib/python2.7/site-packages/SimpleITK/_SimpleITK.so:
> symbol TIFFFieldDataType, version LIBTIFF_4.0 not defined in file
> libtiff.so.5 with link time reference
> TESTS FAILED: simpleitk-0.8.0.post29-py27_0
>
> I got that the issue is linked with the libtiff but I believed that
> anaconda would manage the installation of the dependencies needed.
>
> My system is:
> Ubuntu 14.04
> Python 2.7.8 |Anaconda 2.1.0 (64-bit)| (default, Aug 21 2014, 18:22:21)
> [GCC 4.4.7 20120313 (Red Hat 4.4.7-1)] on linux2
>
> Cheers,
>
> --
>
>
>
>
> *LEMAÎTRE GuillaumePhD CandiateMSc Erasmus Mundus ViBOT
> (Vision-roBOTic)MSc Business Innovation and Technology Management*
> g.lemaitre58 at gmail.com
>
>
> *ViCOROB - Computer Vision and Robotic Team*
> Universitat de Girona, Campus Montilivi, Edifici P-IV 17071 Girona
> Tel. +34 972 41 98 12 - Fax. +34 972 41 82 59
> http://vicorob.udg.es/
>
> *LE2I - Le Creusot*IUT Le Creusot, Laboratoire LE2I, 12 rue de la
> Fonderie, 71200 Le Creusot
> Tel. +33 3 85 73 10 90 - Fax. +33 3 85 73 10 97
> http://le2i.cnrs.fr
>
> https://sites.google.com/site/glemaitre58/
> Vice - Chairman of A.S.C. Fours UFOLEP
> Chairman of A.S.C. Fours FFC
> Webmaster of http://ascfours.free.fr
>  _____________________________________
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-- 

*LEMAÎTRE GuillaumePhD CandiateMSc Erasmus Mundus ViBOT (Vision-roBOTic)MSc
Business Innovation and Technology Management*
g.lemaitre58 at gmail.com

*ViCOROB - Computer Vision and Robotic Team*
Universitat de Girona, Campus Montilivi, Edifici P-IV 17071 Girona
Tel. +34 972 41 98 12 - Fax. +34 972 41 82 59
http://vicorob.udg.es/

*LE2I - Le Creusot*IUT Le Creusot, Laboratoire LE2I, 12 rue de la Fonderie,
71200 Le Creusot
Tel. +33 3 85 73 10 90 - Fax. +33 3 85 73 10 97
http://le2i.cnrs.fr

https://sites.google.com/site/glemaitre58/
Vice - Chairman of A.S.C. Fours UFOLEP
Chairman of A.S.C. Fours FFC
Webmaster of http://ascfours.free.fr
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# This is the CMakeCache file.
# For build in directory: /home/lemaitre/anaconda/conda-bld/work/build
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//path to the bison executable
BISON_EXECUTABLE:FILEPATH=/usr/bin/bison

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//No help, variable specified on the command line.
ITK_USE_SYSTEM_JPEG:BOOL=ON

//No help, variable specified on the command line.
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//No help, variable specified on the command line.
ITK_USE_SYSTEM_TIFF:BOOL=ON

//No help, variable specified on the command line.
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