[ITK-users] SimpleITK - Reading different DICOM serie

[Guillaume Lemaître]

Hi all,

I am currently using SimpleITK with python to read directly some DICOM data.
My dataset is corresponding to an MRI modality composed of 40 series. Each
serie is a 3D volume.

I would like to read the serie one-by-one. As a minimal example, I can post
the following code:

reader = sitk.ImageSeriesReader()
# For each serie found
for serie in reader.GetGDCMSeriesIDs(path_to_data):
    # Get the dicom filename corresponding to the current serie
    dicom_names = reader.GetGDCMSeriesFileNames(path_to_data, serie)
    reader.SetFileNames(dicom_names)
    image = reader.Execute()

I got the following error:

WARNING: In
/home/lemaitre/anaconda/conda-bld/work/build/ITK/Modules/IO/GDCM/src/itkGDCMSeriesFileNames.cxx,
line 138
GDCMSeriesFileNames (0x3078840): No Series were found

However, the output of reader.GetGDCMSeriesIDs(path_to_data) seems ok:
('1.2.826.0.1.3680043.2.1125.1.12083572272639445972057901411530444',
 ............................ 40 lines ...........................
 '1.2.826.0.1.3680043.2.1125.1.98804240625293208256969403455867278')

So my question is the following. What is the right way to passing the
serieID to the GetGDCMSeriesFileNames() function.

Thanks in advance,

Best regards,
-- 




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