[ITK-users] using simpleITK with anaconda python distribution

[Vishwa]

Thanks for getting back to me.. I am not sure how to use the build.sh. Am i
to create those variables mentioned in that file?

In the previous mail, I forgot to mention after I compiled, I tried what
you suggest here

cd ${BUILD_DIR}/SimpleITK-build/Wrapping
${PYTHON} PythonPackage/setup.py install

The last few lines of the output is shown below

Installed
/Users/dagarshali/anaconda/lib/python2.7/site-packages/SimpleITK-0.9.0.dev584-py2.7-macosx-10.5-x86_64.egg

Processing dependencies for SimpleITK==0.9.0.dev584

Finished processing dependencies for SimpleITK==0.9.0.dev584

However, when i import simple itk in python,

import SimpleITK as sitk

Fatal Python error: PyThreadState_Get: no current thread

Abort trap: 6

On Tue, Sep 9, 2014 at 9:41 PM, Matt McCormick <matt.mccormick at kitware.com>
wrote:

> Hi dagarshall,
>
> There is a SimpleITK recipe for conda [1].  To install it from a
> manual build, use the same commands at the end of build.sh:
>
> cd ${BUILD_DIR}/SimpleITK-build/Wrapping
> ${PYTHON} PythonPackage/setup.py install
>
> HTH,
> Matt
>
> [1] https://github.com/conda/conda-recipes/tree/master/simpleitk
>
> On Tue, Sep 9, 2014 at 10:33 PM, dagarshali <dagarshali at gmail.com> wrote:
> > I downloaded the source code for simple itk and complied it as
> instructed. In
> > the cmake configuration, I changed the python paths according to using
> the
> > python distribution of anaconda. I was able to compile it. I have
> attached a
> > snapshot of the cmake configuration
> > <
> http://itk-insight-users.2283740.n2.nabble.com/file/n7586179/Screen_Shot_2014-09-09_at_3.png
> >
> > I am not sure what to do after the compiling.. If I enter import
> SimpleITK
> > as sitk, I get a fatal python error. Can anybody please suggest how to
> > overcome this problem?Thanks in advance.dagarshali
> >
> >
> >
> > --
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