[ITK-users] using simpleITK with anaconda python distribution

[Vishwa]

Thanks very much for the information. I looked at the conda recipe. There
are three files.
One is .sh file, the second is yaml file, and the third is just a test
code. How am i to use that recipe to compile..

There are variables like Source_Dir in the .sh file. How do i get those. I
am not familiar using it.

Am I to just copy the file build.sh into the SimpleITK source code directly
and run sh ./build.sh? I tried that, and it ran for a while and gave an
error.

Best regards,
Vishwa



On Wed, Sep 10, 2014 at 9:13 AM, Bradley Lowekamp <blowekamp at mail.nih.gov>
wrote:

> Hello,
>
> This error message frequently happens when SimpleITK is compiled against a
> different version of  Python than the runtime. This generally indicate
> there is something conflicting funny in your runtime environment.
>
> I was easily able to use the build script from the conda-recipes
> repository. I would strongly recommend this approach when building for the
> anaconda enviroment as it does simplify some of there issue. Your CMake
> configuration does look correct.
>
> You should look at you environment variables, such as PATH,
> DYLD_LIBRARY_PATH, and PYTHONPATH. Additionally look in you user install
> path [1]. You are looking for multiple copies of the SimpleITK module or
> library and or python runtime libraries which could confuse the linker.
>
> Also you can inspect the runtime libraries:
>
>  otool -L
> /Users/blowekamp/anaconda//lib/python2.7/site-packages/SimpleITK/_SimpleITK.so
>
> /Users/blowekamp/anaconda//lib/python2.7/site-packages/SimpleITK/_SimpleITK.so:
> @loader_path/../../../libpython2.7.dylib (compatibility version 2.7.0,
> current version 2.7.0)
> /System/Library/Frameworks/CoreFoundation.framework/Versions/A/CoreFoundation
> (compatibility version 150.0.0, current version 855.17.0)
> /usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version
> 1197.1.1)
> /usr/lib/libstdc++.6.dylib (compatibility version 7.0.0, current version
> 60.0.0)
> /usr/lib/libgcc_s.1.dylib (compatibility version 1.0.0, current version
> 2577.0.0)
>
> [1]
> https://docs.python.org/2/install/#alternate-installation-the-user-scheme
>
> Hope this helps,
> Brad
>
> On Sep 9, 2014, at 10:55 PM, Vishwa <vishwanath.somashekar at gmail.com>
> wrote:
>
> import SimpleITK as sitk
>
> Fatal Python error: PyThreadState_Get: no current thread
>
> Abort trap: 6
>
>
>
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