[ITK-users] Region of two labelObjects

Matt McCormick matt.mccormick at kitware.com
Thu Apr 2 09:22:01 EDT 2015


Hi Pol,

Thanks for considering make improvements to this code.  Instructions
to submit a patch can be found here [1].  Please let us know if you
have any questions.

Thanks,
Matt

[1] https://insightsoftwareconsortium.github.io/ITKBarCamp-doc/CommunitySoftwareProcess/SubmitAPatchToGerrit/index.html

On Thu, Apr 2, 2015 at 8:52 AM, Pol Monsó Purtí <lluna.nova at gmail.com> wrote:
> Hello Gaëtan,
>
> Yes I agree, Thinking about it later I also reached the same conclusion that
> a filter that changes the regions internally without warning could be a
> pitfall.
>
> The RegionFromReferenceLabelMapFilter might actually work for me given that
> I do have the original ROI region and roi image, but I can implement the
> ComputeBoundingBox() function anyway, it's cleaner if I don't use the
> original ROI.
>
> What's the workflow for submitting code? Fork the itk repository, add the
> method and PR or something else?
>
> If you'd rather have a filter that does this, I unfortunatelly won't have
> the time to do it this month (and maybe next)...
>
> Cheers,
>
> Pol
>
>
>
> 2015-04-02 14:32 GMT+02:00 Gaetan Lehmann <gaetan.lehmann at gmail.com>:
>>
>> Hi Pol,
>>
>> 2015-03-30 23:02 GMT+02:00 Pol Monsó Purtí <lluna.nova at gmail.com>:
>>>
>>>
>>> Hello all,
>>>
>>> I have two label objects, how can I merge the two BoundingBoxes together
>>> so I know the necessary size of the image? (other than creating it myself by
>>> searching max/min of each dimension)
>>>
>>> How come LabelMap doesn't resize automatically when objects are added? It
>>> could.
>>
>>
>> The LabelMap class was designed to work as much as possible as the Image
>> class, that does not have this kind of behavior, and to avoid as much as
>> possible the costly operations.
>>
>> So while I don't think this should be done automatically, we should have
>> some methods or filters to make this easy to do.
>>
>> There are a few filters to manipulate the regions of a LabelMap, but none
>> of them does exactly what you need:
>>
>> * PadLabelMapFilter that can enlarge the LabelMap region, but not based on
>> its content
>> * CropLabelMapFilter that can shrink the LabelMap region, but not based on
>> its content
>> * RegionFromReferenceLabelMapFilter that makes the LabelMap region match
>> the region of a reference input image
>> * AutoCropLabelMapFilter that reduce the region covered by a label map
>> based on its content, but can't enlarge it
>>
>> In my opinion, we should have a ComputeBoundingBox() method in LabelMap
>> that compute the region covered by all the label objects - the code can be
>> moved from AutoCropLabelMapFilter. We could then do
>>
>>   labelMap->AddLabelObject(labelObject1);
>>   labelMap->AddLabelObject(labelObject2);
>>   labelMap->SetRegions(labelMap->ComputeBoundingBox());
>>
>> to update the region.
>>
>> Would you agree to implement such a method for the LabelMap class?
>>
>> Optionally, we could also think to a filter to do that in a pipeline.
>>
>> Regards,
>>
>> Gaëtan
>>
>
>
>
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