[ITK-users] [ANNOUNCE] ITK 4.8.0 has been released!
Matt McCormick
matt.mccormick at kitware.com
Tue Jul 7 10:20:14 EDT 2015
On behalf of the Insight Toolkit community, we are proud to announce
that ITK 4.8.0 has been released!
Links to the Sourceforge.net tarballs can be found on the download page:
http://www.itk.org/ITK/resources/software.html
Outline
----------
1. Introduction
2. New Features
3. ITK Changelog
4. ITK Sphinx Examples Changelog
5. ITK Software Guide Changelog
6. ITK Apps Changelog
Introduction
-----------------
The 4.8 release offers substantial benefits to the medical and
scientific imaging community by making the toolkit more accessible to
non-C++ programmers and by providing greater availability on mobile,
high-performance computing (HPC), and web-browser platforms. A few
selected highlights for this release are:
- New remote modules: BridgeNumPy, LabelErodeDilate,
ParabolicMorphology, MinimalPathExtraction
- itk::FFTPadImageFilter to automatically pad images for the FFT
implementation’s supported greatest prime factor
- Additional point set registration capabilities.
- More modules can be built as shared libraries.
- GDCM, MetaIO, KWSys,and MINC have been updated to their latest
upstream versions.
- Python wrapping is in excellent shape and works with the latest GCC,
Clang, and MSVC.
- Experimental cross-compilation support for Windows (MinGW-w64),
ARMv6 (Raspberry Pi), ARMv7 (Android), ppc64le (POWER8), and
JavaScript (Emscripten).
This release is a major milestone that marks the hard work of many
outstanding community members. Congratulations and well done to the 31
contributors to this release. We would especially like to recognize
the new contributors, David Froger, Cyril Mory, Dzenan Zukic, Ivan
Setiawan, Jan Bergmeier, Rolf Eike Beer, Davis Vigneault, Gary Jia,
and Alexander Hewer.
Testing data is available separately from the release archives
starting with this release. Unpack the “InsightData” archive in the
same directory that the “InsightToolkit” archive was unpacked to make
the archive testing data available to a build. When archive testing
data is not present, the BUILD_TESTING CMake configuration option will
be off by default. Turn on BUILD_TESTING without the testing data
archive to fetch the data via the network automatically.
This release introduces CastXML [1], a C-family abstract syntax tree
XML output tool based on Clang. This is a more maintainable
replacement for GCC-XML that works with the latest Microsoft Visual
C++ (MSVC), Clang, and GNU Compiler Collection (GCC) compilers.
CastXML generates XML output that is backwards-compatible with GCC-XML
output, which is parsed by pygccxml [2] in the wrapping process.
Enjoy ITK!
[1] https://github.com/CastXML/CastXML
[2] https://github.com/gccxml/pygccxml
New Features
---------------------
* Wrapping improvements
- Wrapping now uses CastXML instead of GCCXML
- The latest GCC, Clang, and MSVC are fully supported
- Details: http://kitware.com/blog/home/post/888
- Cross-compilation and packaging support
- Details: http://kitware.com/blog/home/post/904
- ITK_WRAP_VECTOR_COMPONENTS option to specify number of wrapped
vector components
- More classes wrapped
* Compiler Support
- GCC 5.1
- Clang 3.6.0
- Better cross-compilation support (requires CMake 3.3)
- Experimental support for Emscripten (JavaScript)
- Details: http://kitware.com/blog/home/post/912
- Experimental support for the Raspberry Pi
- Details: http://kitware.com/blog/home/post/887
- Experimental support for Android
- Details: http://kitware.com/blog/home/post/893
- Experimental support for MXE/MinGW-w64
- Details: http://kitware.com/blog/home/post/883
- Experimental support for the POWER8
- Details: http://kitware.com/blog/home/post/891
* New Remote Modules
- MinimalPathExtraction
- Insight Journal Article: http://hdl.handle.net/1926/1332
- BridgeNumPy
- Convert itk.Image to NumPy array’s and back
- LabelErodeDilate
- Insight Journal Article: http://hdl.handle.net/10380/3399
- ParabolicMorphology
- Insight Journal Article: http://hdl.handle.net/1926/1370
* Infrastructure Improvements
- An UpdateThirdPartyFromUpstream.sh script for 3rd party updates with
Git subtree
- Details: http://kitware.com/blog/home/post/899
- Minimum required CMake version is now 2.8.9
- Many more modules can be built as shared libraries
- ITK_USE_SYSTEM_LIBRARIES variable during initial configuration to
turn on use of common system third party libraries by default
- Release testing data tarball split from source tarball
- Gold linker used by default on Linux
* Filtering Improvements
- itk::FFTPadImageFilter to automatically pad images for the FFT
implementation’s supported greatest prime factor
- itk::AtomicInt class for parallel computation
- Various performance enhancements
* Registration Improvements
- Point set SyN registration
- Point set BSpline SyN registration
* Documentation Improvements
- The ITK Software Guide is now available in HTML
- Details: http://kitware.com/blog/home/post/890
- Updates to the Software Guide, Doxygen, Wiki and Sphinx Examples
* Third Party Library Updates
- GDCM updated to latest upstream
- KWSys updated to the latest upstream
- MetaIO updated to the latest upstream
- MINC updated to the latest upstream
* Style improvements -- ITK gets more stylish with every release!
* Improved code coverage -- we are at 85.4%!
* *Lots* of important bug fixes
* And much more! See details in the log below.
Changes from v4.8rc03..v4.8.0
-----------------------------------------------
Davis Vigneault (1):
COMP: C++11 Warnings in thirdparty PNG module.
Matthew McCormick (9):
COMP: Fix unused parameter warnings in itkMultiThreaderNoThreads.
BUG: Do not output CMake log files in itkSystemInformationTest.
COMP: Work around segfaults with VS12 in RegionOfInterestImageFilter.
DOC: Update Wiki Examples Remote to June 26, 2015.
COMP: Update ParabolicMorphology to address doxygen warning.
COMP: Add missing exports in the ITKFEM module.
BUG: Use CMAKE_LIBRARY_OUTPUT_DIRECTORY for build tree WrapITK.pth.
DOC: Document grafting the input image in composite filters.
DOC: Bump SphinxExample remote module version to 2015-07-02.
Changes from v4.8rc02..v4.8rc03
------------------------------------------------
Bradley Lowekamp (3):
BUG: Remove reliance on exceptions in StringTools::ToData methods
BUG: Fix WriteCellsAsBinary and valgrind defects
COMP: Explicitly export SingleValuedNonLinearVnlOptimizerv4
Matthew McCormick (4):
COMP: Address may be used uninitialized in IdentityTransformTest.
COMP: Address array subscript above bounds in VTKPolyDataReader.
COMP: Work around GDCM test segfault with Clang 3.5+.
BUG: Do not use pthreads with Emscripten.
Michka Popoff (1):
ENH: Update PyInit for Python 3
Changes from v4.8rc01..v4.8rc02
------------------------------------------------
Arnaud Gelas (2):
BUG: memory leaks when calling itk::Mesh::Graft
BUG: fix memory leaks in BorderQuadEdgeMeshFilter using itk::AutoPointer
Bradley Lowekamp (1):
Revert selection "ENH: Add shared libraries for ITK libraries"
Davis Vigneault (1):
STYLE: Minor typographical changes in ParameterizationQuadEdgeMeshFilter
Dženan Zukić (1):
DOC: Improve docs for ConnectedComponentImageFilter
Hans Johnson (1):
STYLE: Use consistent names in template parameters
Sean McBride (2):
COMP: Update MINC to upstream 85145dca36
BUG: updated MINC to a77da29
Changes from v4.7.0..v4.8rc01
--------------------------------------------
Alexander Hewer (1):
COMP: fixed error "Dunno about this gcc" for gcc 5.1
Arnaud Gelas (14):
ENH: add MinimalPathExtraction as a remote module
ENH: fix KWStyle errors for SubdivisionQuadEdgeMesh
COMP: fix warning with non default template parameter for OutputImage
COMP: missing ';' in itkSetClampMacro
STYLE: no need to expose internal type
COMP: fix warning with non default template parameter for OutputImage
COMP: fix warning with non default template parameter for OutputImage
BUG: fix BinaryImageToLabelMapFilter with negative OutputBackgroundValue
DOC: add explanations about input and out filters
COMP: missing include in IterativeTriangleCellSubdivision
DOC: Improve documentation for ParameterizationQuadEdgeMeshFilter
BUG: not all combinations were actually test
ENH: add an exception in BorderQuadEdgeMeshFilter if no boundaries
COMP: fix CMake warning in ITKModuleHeaderTest
Bill Lorensen (7):
ENH: Update to KWStyle conformant version
ENH: Add interpolate capability
ENH: WikiExamples QuickView Update
COMP: VTK AUTOINIT redefinition warnings
COMP: Only require the minimal VTK modules
COMP: Compiler hidden visibility on Mac compiler
COMP: EventMacro backward compatibility
Brad King (25):
COMP: Fix variable reference in ITKVtkGlue module files
ENH: ExternalData: Allow local stores without any URL templates
ENH: ExternalData: Warn on missing file instead of failing
ENH: ExternalData: Add support for custom download scripts
ENH: ExternalData: Add support for custom algorithm-to-URL mapping
DOC: ExternalData: Update documentation to match CMake copy
ENH: Teach UpdateThirdPartyFromUpstream to support spaces in path
ENH: Improve UpdateThirdPartyFromUpstream for initial imports
ENH: Require CMake 2.8.9 or greater
ENH: Do not produce ITKGDCM library when using system GDCM
ENH: Drop gdcm source subtree to prepare for fresh import
ENH: Add script to update GDCM from upstream
STYLE: Tell Git not to check whitespace in GDCM
STYLE: Tell Git about larger files in GDCM
COMP: Configure GDCM to build inside ITK
COMP: Fix GDCM to handle older expat library
COMP: Cleanup CMP0022 warnings in GDCM module
COMP: Add missing include in GDCM source
COMP: Teach GDCM to honor ITK_DYNAMIC_LOADING option
ENH: KWSys: Tell Git not to export .gitattributes
COMP: Remove cmake_minimum_required calls from GDCM
COMP: Remove extra CMake policy settings in GDCM
COMP: Use more standard SSE intrinsics in GDCM copy of OpenJPEG
COMP: Fix GDCM std::accumulate initial value type
ENH: Update version of CastXML built for wrapper generation
Bradley Lowekamp (48):
PERF: Use ImageAlgorithm::Copy in ImageSeriesWriter
BUG: Enable setting all zeroes for fixed parameters for displacement
ENH: Refactor versor to matrix transform code
DOC: Clarify that Scale Skew Versor does addition
COMP: Fix unsafe usage of sprintf
BUG: Correct Simularity3D Jacobian
BUG: Ensure OptimizerParameters doesn't leak its helper
BUG: Fix incorrectly ordering of template parameters
COMP: check for search.h in libtiff
BUG: restore the center point fixed parameters for scale transforms
PERF: Remove frequent dynamic allocations used with std::vector
COMP: Use _timezone for Visual Studio
BUG: Restore IO support for BSplineDeformableTransform
BUG: Enable VectorImage to work with the ImageSeriesWriter
BUG: Replace std::cout message Warning marco
BUG: Correct ExtractImageFilters Type macro
DOC: Separately document IsNull and IsNotNull
ENH: Modularize KWStyleTests
BUG: Remove ExhaustiveOptimizer ivar which was unused
STYLE: Update IOFDF to address KWStyle issues
BUG: Fix undefined signed integer shift
BUG: Fix IOFDFInDoxygenGroup test
BUG: Update MGHImageIO for header guarder style
BUG: Fix itkFDFImageIOTest link error on windows
STYLE: Update SCIFIO for KWStyke failures
BUG: Move LBFGSB callback helper to parent
BUG: Use base's NumberOfIterations for stopping condition
BUG: Update AmoebaOptimizer NumberOfIterations
BUG: Use base's NumberOfIterations for stopping condition
PERF: Report progress for linear transform only at scanline completion
BUG: Correct convergence string check
BUG: Avoid underflow in gradient range calculation
ENH: Use return by value for ImageAlgorithm::EnlargeRegionOverBox
BUG: No exception for 0 parameter transforms
COMP: Address conversion compilation warning
ENH: Use PrinSelfObjectMacro
BUG: Use module's libraries for linking header test.
ENH: Add export specifications to FFT library
COMP: Address conversion compilation warning
COMP: This patch address linking errors with WrapITK
DOC: Improving documentation for the names inputs of the ProcessObject
BUG: Isolate CannyEdgeDetection's internal filter from external
PERF: Refactor ExpandImageFilter loop
ENH: Add AtmoicInt class, use TimeStamp & LightObject
COMP: Address signed to unsigned comparison warning in AtomicInt Test
ENH: Move IsPrime and GreatestPrimeFactor to compiled cxx file
COMP: Add export missing export specifications
BUG: Fix reading HDF5 images into different dimension.
Brian Helba (2):
ENH: Add scripts for automated updating of ThirdParty libraries
ENH: Make Vector construction from scalar value explicit
Christopher Mullins (12):
STYLE: Keep codesnippet lines under 80 characters.
STYLE: Fix Latex blocks in documentation to include newlines.
COMP: Fix clang warnings
DOC: Fix Latex underscore for SoftwareGuide
BUG: Return a correct voronoi partition in Danielsson filter example.
STYLE: Fix Latex blocks in documentation to include newlines.
DOC: Use the dilated version of the FivePoints image
COMP: Use c++11 noexcept declarator.
COMP: Fix override warnings on clang with GPU module and MINC
COMP: Fix clang override warnings for Review module.
COMP: Fix more clang warnings in review module
COMP: Fix more clang override warnings in Review module.
Cyril Mory (3):
BUG: Fixed itkWarpImageFilter wrong result in some cases
ENH: Method to compute InputRequestedRegion in itkWarpImageFilter
ENH: Moved some of itkWarpFilter from private to protected
David Froger (2):
ENH: Check regions in HDF5 streaming test
BUG: Fix HDF5 write streaming test.
Davis Vigneault (4):
STYLE: Minor style and documentation changes to ITK examples.
DOC: Minor changes and clarifications to the registration
chapter of Book 2.
STYLE: Minor wording and formatting changes to Software Guide
Mesh examples.
COMP: Build failure using EuclideanDistancePointMetric with
mismatched meshes.
Dženan Zukić (4):
COMP: VS 2012+ compile fixes and CMake warnings
COMP: fixing quote matching in vtkGlue-related .cmake file
ENH: adding reverse iteration test
ENH: using scanline iterator instead of linear iterator
GDCM Upstream (1):
GDCM 2015-04-29 (81e551fc)
Gary JIA (1):
BUG: Fix memory leak at GPUCommon
Gaëtan Lehmann (21):
BUG: fix extra carriage return in python callbacks
ENH: use castxml in wrapping
COMP: almost fix java build
ENH: use modern cmake list operations in wrapping
COMP: hide compiler warnings when building pcre and swig
COMP: fix the IOFDF module name used in wrapping
COMP: fix last python runtime warnings about unknown types
COMP: fix undefined __float128 type with gcc
BUG: reactivate PythonGetNameOfClass and fix the FDFImageIOFactory name
COMP: fix warnings due to double MultipleValuedCostFunction wrapper
BUG: fix ipython custom completion
BUG: fix runtime information for cross correlation filters
ENH: let the user choose the tradeoff between size and speed in
fft operations
ENH: update progress in ImageFileReader
ENH: initialize the progress in ImageFileWriter
BUG: fix extra line return in terminal progress display
BUG: fix missing space before "done" in progress display
ENH: pass ActualXDimensionIsOdd through the pipeline
COMP: fixes for SizeGreatestPrimeFactor
ENH: Add itkFFTPadImageFilter
ENH: factorize shared code in itk::PadImageFilterBase
Gert Wollny (1):
COMP: defining ITK_USE_FLOAT_SPACE_PRECISION
Hans Johnson (39):
COMP: Add c++11 override designation
COMP: Identify null pointer assignments
STYLE: rm explicit void for parameterless function
STYLE: Use ITK_NULLPTR to utilize c++11 features
BUG: Incorrect addition of ITK_OVERRIDE
COMP: Use STREQUAL instead of MATCH
BUG: return type defaults to zero.
BUG: ImageType, CofficientImageArray types missing
DOC: Invalid doxygen return for void function.
COMP: _Pragma suppress fltpnt equality warnings
COMP: Allow exact floatpnt equality checks.
COMP: Avoid floatpnt equality check
COMP: Floatpnt equality for divisor
COMP: Avoid unnecessary float pnt equality checks.
PERF: Improve perf of ANTSNeighborhoodCorrelation
BUG: Test depending on itkMesh.h in Common
COMP: Make DCMTK header functions const
Revert "COMP: VTK AUTOINIT redefinition warnings"
COMP: VTK and ITK H5 build program collision
COMP: Create out-of-line virtual method defintions
COMP: Create out-of-line virtual method macros
DOC: Clarify strange syntax for itk::MetaEvent
COMP: Fix ENABLE_SHARED variable name
STYLE: Remove outdated cmake version support
STYLE: Move SymmetricEigenAnalysis to Deprecated
COMP: Prefer modern CMake visibility settings
STYLE: Use ITK_NOEXCEPTION macro
ENH: Continue to deprecate ::Zero and ::One
ENH: Avoid need for const_cast, ensure consistency
BUG: Incorrect function signature
COMP: Intel compiler warning suppression
ENH: Add shared libraries for ITK libraries
ENH: Remove unnecessary const_cast
STYLE: Move utility TransformIOHelper to cxx file
BUG: Missing ITKIOMINC_EXPORT on __Private()
STYLE: Fixed AnalyzeObjectMap header guard style.
COMP: Missing exports for templates
ENH: Update MGHIO for consistency with ITK.
BUG: Remove shared specifications from TransformIO
Ivan Setiawan (2):
BUG: Fix initial ImageTrueMax to the most negative value.
BUG: Test case to verify fix of ImageTrueMax in MattesMI.
Jan Bergmeier (1):
DOC: Changed indices for steps in ExhaustiveOptimizer.
Jon Haitz Legarreta (10):
ENH: New test for the BinaryStatisticsKeepNObjectsImageFilter
ENH: New test for the itkLabelShapeKeepNObjectsImageFilter
ENH: Add test for itkShapeRelabelImageFilter
ENH: Add test for the itkLabelStatisticsKeepNObjectsImageFilter
ENH: Add test for itkBinaryShapeKeepNObjectsImageFilter
ENH: Add test for itkLabelStatisticsOpeningImageFilter
DOC: Correct documentation typo.
ENH: Increase code coverage for itkCustomColormapFunction
ENH: Increase code coverage for itkCustomColormapFunction
ENH: New test for the itkMetaGaussianConverter
Julien Jomier (1):
BUG: Output pointer origin is not set causing a memory access error.
KWSys Robot (3):
KWSys 2015-04-19 (4f39791b)
KWSys 2015-05-12 (b1d560a0)
KWSys 2015-05-18 (9a6b7c3f)
Kevin H. Hobbs (1):
COMP: new baseline for building against VTK master
Marius Staring (2):
BUG: workaround for 64bit VS2013 Release segfaults
COMP: workaround for 64bit VS2013 Release ICE
Matthew McCormick (160):
ENH: Add BridgeNumPy Remote Module.
COMP: Bump AnalyzeObjectMapIO to fix doxygen warning.
STYLE: Style changes for itkGaussianDerivativeImageFunctionTest.
ENH: Test GaussianDerivativeImageFunction with unsigned short.
ENH: Bump CMakeLists.txt version to 4.8.0.
DOC: Add C++11 macros to doxygen configuration.
ENH: Remove FindNUMARRAY.cmake.
STYLE: Too many spaces before semi-colon in
PCAShapeSignedDistanceFunction.
COMP: Bump Wiki Examples revision to fix Doxygen warnings.
COMP: Fix ITK_OVERRIDE update DebugMacro build errors.
DOC: Updates to GettingStarted.txt.
BUG: Remove Testing/Temporary/CTestCostData.txt.
ENH: Update doxygen.config for Doxygen 1.8.9.1.
ENH: Bump release branch version to 4.7.1.
ENH: Bump CMakeLists.txt version to 4.8.0.
BUG: Clear TransformIO's list of transforms in TransformFileReader.
DOC: Rename duplicate doxygen section.
Revert Doxygen version 1.8.9.1 to 1.8.5 config to clean up dashboard
DOC: Fix Doxygen override, nullptr, noexcept definitions.
DOC: Note that push access is not required to get patches merged.
COMP: Fix wrapping runtime warning on unknown itk::Matrix.
COMP: Add missing types for MeshTraits wrapping.
COMP: Do not wrap the Container types for CellInterface * types.
COMP: Add wrapping for CellTraitsInfo.
COMP: Wrap missing Mesh templates.
DOC: Clean up some wrapping comments.
ENH: Add wrapping for ITKImageNoise module.
STYLE: Clean up inter-definition space for Image,ImageBase,ProcessObject.
ENH: Fetch source tarball external data from midas3.kitware.com.
BUG: Fix BridgeNumPy signed / unsigned short correspondance.
DOC: Improve ImageScanlineIterator documentation.
ENH: Add missing {Set,Get}Element methods to Array2D.
BUG: Fix linking SmoothingRecursiveYvvGaussianFilter with install tree.
BUG: Add CMake export code for ITK_USE_SYSTEM_GDCM.
ENH: Pass CMAKE_GENERATOR to ExternalProject's.
ENH: Update LLVM/Clang ExternalProject to 3.6.0.
ENH: Update MetaIO License from Upstream.
ENH: Bump MetaIO to latest upstream.
BUG: Export ITK_FFTW_INCLUDE_PATH as CMake path.
COMP: Do not include tests/ directory in clang tarball.
ENH: Add Azure Storage as ExternalData source.
STYLE: Update SplitComponents module for KWStyle fixes.
COMP: Fix LevelSetsv4 tests with libc++.
STYLE: Style fixes for LevelSetsv4 and related classes.
BUG: Move MagnitudeAndPhaseToComplex filter wrapping to ITKImageIntensity.
ENH: Document testModules.sh and move to Utilities/Maintenance
BUG: Fix Python tests on Windows with Ninja generator.
STYLE: Update IOSTL module for KWStyle test.
BUG: Set ITK_BUILD_SHARED in ITKConfig.cmake on Windows.
BUG: Suppress wrapping type conversions warnings with MSVC.
COMP: Address quoted MSVC variable in GDCM.
BUG: WrapITK.pth should contain the lib/ directory with VS.
COMP: Suppress swig build configure warning.
ENH: Use CMAKE_CROSSCOMPILING_EMULATOR to run HDF5 detection.
BUG: Do not use EXECUTABLE_OUTPUT_PATH for vcl tests.
BUG: Do not enable floating point exceptions in tests with MinGW.
DOC: Update KWStyle location.
BUG: Add QuickViewTest baseline for Mac.
ENH: MetaIO use UpdateThirdPartyFromUpstream.sh
ENH: Arrange MetaIO sources for UpdateThirdPartyFromUpstream.sh.
ENH: Add root snapshot commit support to UpdateThirdPartyFromUpstream.sh
COMP: Do not try to generate tiff_fax3sm.c when cross compiling.
COMP: Android does not currently have posix_memalign.
COMP: The Android pwd.h passwd struct does not have a pw_gecos entry.
COMP: Android does not have pthread_setcancelstate.
COMP: Do not do __errno_location workaround on Android.
COMP: Removed unused parameters in itkThreadPoolTest.
BUG: Address detection of TransformReadWriteTest as executable.
ENH: Set CMP0056 to NEW.
COMP: Work around test file too big with x64_64-w64-mingw32.
COMP: Increase
itkMattesMutualInformationImageToIMageMetricv4Test tolerance.
COMP: Address NumericTraits warning related to POWER8 char.
BUG: Add new ResampleImageFilter9Test baseline for MinGW.
BUG: Add MinGW baseline for VoronoiPartitioningImageFilterTest1.
COMP: Fix vnl_sample.cxx for srand48 but no drand48.
ENH: Add ITK_DYNAMIC_LOADING CMake option.
COMP: Support S_IRUSR and S_IWUSR.
COMP: Do not log swig configure output.
BUG: NumericTraits< char > does not have Self typedef.
ENH: Do not use TestBigEndian from CMAKE_ROOT.
COMP: Use sizeof(void *) instead of sizeof(size_t) for address model.
COMP: Do not use GCC demangling with emscripten.
ENH: Use try_run to determine if double correction required.
COMP: Address quoted MSVC variable in GDCM.
COMP: Suppress Swig configure output.
COMP: Remove duplicate InternalLabelType typedef.
COMP: Set CMP0058 to NEW.
COMP: Add missing InternalLabelType.
BUG: Specify absolute path to double-conversion-configure.h for install.
DOC: Clarify the UpdateThirdPartyFromUpstream.sh commit message.
BUG: Link to VTK 6 rendering backend modules.
COMP: Pass --quiet to swig's configure script.
STYLE: Update HigherOrderAccurateGradient module for style fixes.
ENH: Mark ITK_DYNAMIC_LOADING as an advanced CMake variable.
COMP: Ignore swig-prefix warnings.
BUG: GDCM set default ultrasound spacing when not found.
COMP: Initialize arrays in itkCurvatureFlowFunction.
BUG: Add VTK modules for annotation rendering.
BUG: Link vtkRenderingFreeType in the VTK modules.
COMP: Add itkIntTypes.h header for SizeValueType in itkVnlFFTCommon.h
STYLE: Style fixes for RayCastHelper::CalcRayIntercepts
COMP: Run the SWIG configure step in a CMake script.
ENH: Bump release branch version to 4.7.2.
STYLE: Bump IOFDF module for style and cleanup.
BUG: Fix DoxygenInGroup test from .zip release files.
COMP: Do not wrap exotic QuadEdgeMesh CellInterface types.
COMP: Remove FFTWGlobalConfiguration param doxygen keyword.
COMP: Do not reference ::MetaEvent in itkMetaEvent.h docs.
DOC: itkSymmetricEigenSystem is now in the ITKDeprecated module.
BUG: Fix TestDriver executable for itkSymmetricEigenSystemTest.
BUG: Use consistent SizeGreatestPrimeFactor in deconvolution tests.
COMP: Use signed char in ImageToImageMetricv4 test.
COMP: Do not include itkDynamicLoader in header tests.
COMP: Include byteswap.h for Android in GDCM.
COMP: Use signal.h instead of sys/signal.h in GDCM.
COMP: Not all versions of Android have posix_memalign.
COMP: Initialize variable in PointSetToListSampleAdaptorTest.
COMP: Suppress getpwnam warning with static executables.
COMP: Tighten LandmarkWarping2 lines for Software Guide.
ENH: Allow skip of FloatPointExceptions implementation for absent fenv.h.
COMP: Define feenableexcept for Emscripten.
BUG: HDF5 do not force CMake CheckTypeSize on include.
STYLE: Style fixes to itkVideoStream.e
COMP: Ignore build warnings for libs unfound by emscripten.
BUG: Run HDF5 H5detect in working directory with the executable.
BUG: HDF5 use CMAKE_EXECUTABLE_SUFFIX.
COMP: Work around Emscripten internal compiler crash in VideoStream.
COMP: Use byteswap.h with GDCM with Emscripten.
COMP: Recognize Emscripten in socket++.
BUG: Remove HDF5's own internal CheckTypeSize.cmake.
ENH: Enable cross-compiling of the wrapping.
COMP: Missing semi-colon in FFT Hermitian filters.
ENH: Add ExternalData_NO_SYMLINKS option.
ENH: Mount local filesystem in the test driver for Emscripten.
BUG: Do not install wrapping with CMAKE_PREFIX_PATH.
ENH: Define CPACK_PACKAGE_CONTACT.
ENH: Add post-commit hook for third party library patches.
ENH: Pass the CastXML flags directly.
STYLE: Rename GCC-XML references to CastXML.
ENH: Send an error when CMAKE_CXX_COMPILER_TARGET is not set.
ENH: Bump CastXML version for cross-compiling target fix.
BUG: Use STRING type for PY_SITE_PACKAGES_PATH.
BUG: Continue when IPython.get_ipython throws an AttributeError.
ENH: Add ITK_USE_SYSTEM_LIBRARIES
STYLE: Fix indentation in ITKSetStandardCompilerFlags.cmake.
COMP: Do not enable ITK_HAVE_SYNC_BUILTINS with Emscripten.
COMP: Fix MinGW ITK_HAVE_SYNC_BUILTINS detection.
ENH: Split testing data tarball form source tarball.
COMP: Do not use ITK_NULLPTR as sentinel.
ENH: Use gold linker on Linux with GCC.
COMP: Add try_compile check for gold linker.
COMP: Do not build dsrc2c.c with -fvisibility-inlines-hidden.
BUG: Remove shared specifications from IOTransformBase.
BUG: Required GCC version for gold linker is 4.8.3.
BUG: Fix ITKIOMINCExport.h capitalization.
BUG: Add missing include directory required after MINC update.
BUG: Bring in IOFDF license updates.
COMP: Add missing HDF5 include for MINC.
COMP: Add missing HDF5 include directory for ITKIOMINC.
COMP: Fix itkVTKImageExport.h header name in VtkGlue.i.
MetaIO Maintainers (2):
MetaIO 2015-04-12 (b7969294)
MetaIO 2015-04-21 (dc4f7d16)
Michka Popoff (20):
COMP: Use c++ style comments in pyBase.i
ENH: Update to swig 3.0.3
STYLE: Cleanup up cmake files (if, endif, foreach, endforeach).
ENH: Update to SWIG 3.0.5
COMP: Fix PythonReadDicomTagTest on OS X
ENH: Improve wrapping for Vector image types
ENH: Cleanup itkComposeImageFilter wrapping
ENH: Setup correct wrapping of GradientRecursiveGaussianImageFilter
ENH: Add Get/SetSigmaArray to GradientRecursiveGaussianImageFilter
ENH: Add checks for base types when wrapping more complex types
COMP: Fix DiffeomorphicDemonsRegistration Wrapping
STYLE: Rename ITK_WRAP_DIMS to ITK_WRAP_IMAGE_DIMS
ENH: Add ITK_WRAP_VECTOR_COMPONENTS option
STYLE: Replace GCCXML by CASTXML
BUG: Wrap FixedArray sizes also for vector components
ENH: Wrap MersenneTwisterRandomVariateGenerator
ENH: Wrap CustomColormapFunction
ENH: Update to PCRE 8.37
ENH: Enable wrapping of 4 dimensional vectors
ENH: Remove inline namespace fix for Wrapping
Nick Tustison (10):
ENH: Adding point set reg. capabilities for SyN.
PERF: Tolerance for testing needs to be increased.
BUG: Coverity divide by zero complaint.
BUG: Metric evaluation had an incorrect sign.
ENH: Making the point set type visible.
BUG: Need to check if maxNorm == 0.
BUG: Pixel type shouldn't be initialized with scalar.
ENH: Cleaning up point set reg. in BSplineSyN
ENH: Adding tangent space calculation for SyN methods.
BUG: Added sampling only within the specified mask.
Niels Dekker (2):
BUG: workaround for 64bit VS2013 Release segfault
COMP: Fixed MSVC warnings, "warning D9025: overriding '/W1' with '/w'"
Richard Beare (3):
ENH: LabelErodeDilate as a remote module
ENH: remote.cmake for parabolic morphology
ENH: Use SHA for LabelErodeDilate module.
Rolf Eike Beer (2):
STYLE: ExternalData: Replace MATCHES with STREQUAL where possible
STYLE: ExternalData: Clean up duplicate regex matches with CMAKE_MATCH_<n>
Sean McBride (12):
COMP: Changed KWStyle check for header include guard names
COMP: Remove double underscore in header guards (.h & __itk*_h form)
COMP: Remove double underscore in header guards (.hxx & __itk*_h form)
COMP: Remove double underscore in header guards (.in & __itk*_h form)
COMP: Remove remaining double underscore in header guards (__itk form)
COMP: Remove unnecessary header guards in .cxx files
COMP: Manually search for "__itk" and clean up double underscore usage
COMP: fixed clang -Wkeyword-macro warning by removing invalid #undef
COMP: Suppress clang -Wdocumentation-unknown-command false positive
COMP: properly escape @ char in doxygen comments
COMP: Escaped @ character in doxygen comments
BUG: updated libminc SHA to newest
Ziv Yaniv (1):
BUG: Versor initialized with null axis (0,0,0) did not throw exception.
ITK Sphinx Examples Changelog
-------------------------------------------------
Arnaud Gelas (9):
DOC: recommend to use CreateNewExample.py
ENH: Add one example for BinaryFillholeImageFilter
add one example to illustrate the usage of LabelSelectionLabelMapFilter
Apply BinaryMorphologicalClosingFilter on all LabelObjects of
given LabelMap
Add one example to apply morphological closing on specific LabelObject
fix rst formatting
Add one example to overlay one label map on top of one image
Minor fixes in page title
COMP: Fix sphinx warning (missing '.' for one title)
Bradley Lowekamp (1):
BUG: Fix ITK_WRAP_PYTHON check
Dženan Zukić (1):
Adding DicomSeriesReadImageWrite3
Matt McCormick (11):
ENH: Add option to build Python wrapping in the superbuild.
COMP: Remove "ImageFilter" from ApplyGradientRecursiveGaussian.
COMP: Set CMP0054 to NEW.
BUG: Fix links to Midas community.
ENH: Send an error when the source/build path is too long on Windows.
BUG: Extend the superbuild path limit.
BUG: Add ITKMetaIO to ComputePeronaMalikAnisotropicDiffusion to
create output.
ENH: Update VTK version to 6.2.0.
COMP: Do not log ExternalProject steps that generate false positives.
COMP: Remove unused variables and types.
ENH: Bump ITK ExternalProject to v4.8.0.
Michka Popoff (19):
ENH: Add GradientRecursiveGaussianImageFilter example
COMP: Fix failing ApplyGradientRecursiveGaussianImageFilter tests
DOC: Fix GradientRecursiveGaussianImageFilter documentation
COMP: Fix missing images in ApplyGradientRecursiveGaussianFilter
ENH: Add new example with GradientRecursiveGaussianImageFilter
BUG: Correctly detect and set python_file
ENH: Add Python code to RemoveHolesNotConnectedToImageBoundaries
STYLE: Remove example_name and folder variables
STYLE: Pep8 cleanup for CreateNewExample.py.in
ENH: Improve CreateNewExample script
ENH: ADD ComputePeronaMalikAnisotropicDiffusion Python Example
ENH: Add Anti Alias Python Example
ENH: Add tests for Python examples in AnisotropicSmoothing
BUG: Fix PeronaMalik python example
ENH: Add ApplyColorMap Python example
ENH: Simplify CMakeLists Python setup
ENH: Add custom colormap Python example
ENH: Improve Python SuperBuild
ENH: Replace double with float in python examples
ITK Software Guide Changelog
---------------------------------------------
* Note that improvements in the Examples/ directory of the ITK
repository also contribute to the improvements in the Software Guide.
Davis Vigneault (1):
DOC: Fix typo's in SystemOverview and DataRepresentation.
Matt McCormick (9):
ENH: Update the MetaIO license file location.
ENH: Add option to build HTML output with tex4ht.
ENH: Remove the 000- and 001- prefixes to the main .tex files.
ENH: Add CMake option to turn off the draft watermark.
ENH: Add some styling to the HTML index.
DOC: Update Python wrapping information.
BUG: Fixes to How To Write A Filter.
ENH: Bump ITK ExternalProject to July 01, 2015.
COMP: Address missing bracket and backslash escapes.
ITK Apps Changelog
------------------------------
Matt McCormick (2):
COMP: Fix @only capitalization in External-FLTK.cmake.
ENH: Bump ITK Superbuild version to 4.8.0.
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