[ITK-users] [ITK] Pointset registration

[Matt McCormick]

Hi Matias,

The examples for each class are linked in the class doxygen page [1].
There is a Wiki example for the LandmarkBasedTransformInitializer [2].

HTH,
Matt

[1] http://www.itk.org/Insight/Doxygen/html/classitk_1_1LandmarkBasedTransformInitializer.html

[2] http://www.itk.org/Insight/Doxygen/html/WikiExamples_2Registration_2LandmarkBasedTransformInitializer_8cxx-example.html#_a3

On Wed, Nov 11, 2015 at 5:15 PM, Matias Montroull <matimontg at gmail.com> wrote:
> Thanks, it is indeed the case you describe.. Is there an ITK example I can
> use as reference to implement the landmarkbasedtransform?
> Matias.
>
> El mié., 11 de nov. de 2015 a la(s) 7:09 p. m., Andras Lasso
> <lasso at queensu.ca> escribió:
>>
>> It seems that you want to do a simple landmark registration (you touch
>> exactly the same points with the stylus, in the same order, as you defined
>> in the image). If this is the case, then you should not use ICP but
>> itk::LandmarkBasedTransformInitializer (with optional preprocessing step to
>> determine the scale), as it is done in this Slicer module:
>>
>>
>> https://github.com/Slicer/Slicer/blob/master/Modules/CLI/FiducialRegistration/FiducialRegistration.cxx
>>
>>
>>
>> Andras
>>
>>
>>
>>
>>
>> From: Community [mailto:community-bounces at itk.org] On Behalf Of Matias
>> Montroull
>> Sent: Wednesday, November 11, 2015 4:58 PM
>> To: Matt McCormick <matt.mccormick at kitware.com>
>> Cc: insight-users at itk.org Users <insight-users at itk.org>
>> Subject: Re: [ITK] [ITK-users] Pointset registration
>>
>>
>>
>> Yes, here it goes..
>>
>>
>>
>> you will notice there are points that I had to repeat, the original
>> dataset was 4 points on each file and I was getting warnings:  Number of
>> unknowns(12) greater than number of data (4)
>>
>>
>>
>> "puntosfijos.txt" is the fixed pointsets
>>
>> "puntosflotantes.txt" is the moving pointset..
>>
>>
>>
>> Thanks for your help.
>>
>>
>>
>> Matias.
>>
>>
>>
>> El mié., 11 de nov. de 2015 a la(s) 6:43 p. m., Matt McCormick
>> <matt.mccormick at kitware.com> escribió:
>>
>> Hi Matias,
>>
>> Can the datasets be shared?
>>
>> Thanks,
>> Matt
>>
>> On Wed, Nov 11, 2015 at 4:38 PM, Matias Montroull <matimontg at gmail.com>
>> wrote:
>> > Thanks.
>> >
>> > Here's another question, it seems I need 12 points to perform the
>> > registration and obtain the matrix, now, the results I'm getting are not
>> > very good. We have the algorithm programmed manually (not using ITK) and
>> > when we compare the results are different (way too different).
>> > I just pulled the example and modified to 3 dimensions and changed the
>> > translationtransform to an affine transform. Is there an example using
>> > Affine that I can check? I'm thinking is not just changing the
>> > transform,
>> > there may be other variables I need to tweak..
>> > Matias.
>> >
>> > El mié., 11 de nov. de 2015 a la(s) 5:51 p. m., Dženan Zukić
>> > <dzenanz at gmail.com> escribió:
>> >>
>> >> Nowhere, which means it's the >> operator's standard white-space
>> >> separators (spaces, tabs, newlines).
>> >>
>> >> On Wed, Nov 11, 2015 at 3:03 PM, Matias Montroull <matimontg at gmail.com>
>> >> wrote:
>> >>>
>> >>> by the way, where in the code is the space separator specified?
>> >>>
>> >>> El mié., 11 de nov. de 2015 a la(s) 5:02 p. m., Matias Montroull
>> >>> <matimontg at gmail.com> escribió:
>> >>>>
>> >>>> that worked! Thanks for the advise, I was under the impression that
>> >>>> points needed to be separated by ";"
>> >>>> Thanks again
>> >>>>
>> >>>> El mié., 11 de nov. de 2015 a la(s) 5:00 p. m., Dženan Zukić
>> >>>> <dzenanz at gmail.com> escribió:
>> >>>>>
>> >>>>> By looking at the code, the numbers should be separated by space,
>> >>>>> not
>> >>>>> semicolon. Can you try that?
>> >>>>>
>> >>>>> HTH
>> >>>>>
>> >>>>> On Wed, Nov 11, 2015 at 2:51 PM, Matias Montroull
>> >>>>> <matimontg at gmail.com>
>> >>>>> wrote:
>> >>>>>>
>> >>>>>> Hi Dženan, thanks for the suggestion, I tried that example and I
>> >>>>>> think
>> >>>>>> I'm missign something as my disk drive became crazy.
>> >>>>>> I basically created 2 txt files with a set of 4 points each in this
>> >>>>>> format:
>> >>>>>> -0.585938;92.406328;38.200
>> >>>>>> 44.7654;52.73442;61.000
>> >>>>>> -53.5;49.218792;68.200
>> >>>>>> -1.757814;81.445382;70.600
>> >>>>>>
>> >>>>>> second file has the same format but different numbers of course.
>> >>>>>>
>> >>>>>> Is there anything wrong with how I entered the point sets in both
>> >>>>>> files?
>> >>>>>>
>> >>>>>> As you can see it is 3 points per line separated by this character
>> >>>>>> ";"
>> >>>>>>
>> >>>>>> Thanks,
>> >>>>>>
>> >>>>>> Matias.
>> >>>>>>
>> >>>>>>
>> >>>>>> El mar., 10 de nov. de 2015 a la(s) 6:16 p. m., Dženan Zukić
>> >>>>>> <dzenanz at gmail.com> escribió:
>> >>>>>>>
>> >>>>>>> Have you seen these two examples:
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv3_2IterativeClosestPoint3_8cxx-example.html
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> http://www.itk.org/Doxygen/html/Examples_2RegistrationITKv4_2IterativeClosestPoint3_8cxx-example.html
>> >>>>>>>
>> >>>>>>> HTH
>> >>>>>>>
>> >>>>>>> On Tue, Nov 10, 2015 at 3:18 PM, Matias Montroull
>> >>>>>>> <matimontg at gmail.com> wrote:
>> >>>>>>>>
>> >>>>>>>> Hi,
>> >>>>>>>>
>> >>>>>>>> I have 2 sets of points (one is points on an image and another
>> >>>>>>>> one
>> >>>>>>>> is points on a NDI tracker) and I need to obtain the
>> >>>>>>>> transformation matrix.
>> >>>>>>>> What would be the best method? I'm currently using a Solver but
>> >>>>>>>> I'd like to
>> >>>>>>>> implement this using ITK and better if it is SimpleITK.
>> >>>>>>>>
>> >>>>>>>> Thank you!
>> >>>>>>>>
>> >>>>>>>> Matias.
>> >>>>>>>> --
>> >>>>>>>> Matias
>> >>>>>>>>
>> >>>>>>>> _____________________________________
>> >>>>>>>> Powered by www.kitware.com
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>> >>>>>>>> Kitware offers ITK Training Courses, for more information visit:
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>> >>>>>>>>
>> >>>>>>>
>> >>>>>> --
>> >>>>>> Matias
>> >>>>>
>> >>>>>
>> >>>> --
>> >>>> Matias
>> >>>
>> >>> --
>> >>> Matias
>> >>
>> >>
>> > --
>> > Matias
>> >
>> > _____________________________________
>> > Powered by www.kitware.com
>> >
>> > Visit other Kitware open-source projects at
>> > http://www.kitware.com/opensource/opensource.html
>> >
>> > Kitware offers ITK Training Courses, for more information visit:
>> > http://www.kitware.com/products/protraining.php
>> >
>> > Please keep messages on-topic and check the ITK FAQ at:
>> > http://www.itk.org/Wiki/ITK_FAQ
>> >
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>>
>> --
>>
>> Matias
>
> --
> Matias