[ITK-users] [ITK-dev] [ANN] ITK 4.9 Release Candidate 1 is ready for testing!
Dženan Zukić
dzenanz at gmail.com
Wed Nov 25 16:40:46 EST 2015
It turns out that all the compile errors were occurring in WikiExamples. I
solved all except one:
ITK_FIXED_PARAMETERS_ARE_DOUBLE is not defined in
file ITK\Modules\Remote\WikiExamples\Utilities\FileOutputWindow.cxx line
23, but it should be judging from the comment on that line.
For the rest, I created a pull request:
https://github.com/InsightSoftwareConsortium/ITKWikiExamples/pull/3
On Wed, Nov 25, 2015 at 4:08 PM, Simon Alexander <skalexander at gmail.com>
wrote:
> Perfect. I'm under a deadline that is likely to eat the rest of the week
> but if that clears up I'll try and jump in earlier.
>
> On Wed, 25 Nov 2015 at 16:06 Dženan Zukić <dzenanz at gmail.com> wrote:
>
>> OK I will work on it for an hour or two now, and I will make a branch and
>> push it to Gerrit so whoever wants can pick up from there and keep updating
>> it.
>>
>> On Wed, Nov 25, 2015 at 4:02 PM, Simon Alexander <skalexander at gmail.com>
>> wrote:
>>
>>> Makes sense. At this point I am unlikely to have time to look at this
>>> until Saturday, but have hopes for a few free hours there.
>>>
>>> On Wed, 25 Nov 2015 at 15:58 Dženan Zukić <dzenanz at gmail.com> wrote:
>>>
>>>> Building git master from Nov 23rd with examples and testing enabled I
>>>> get 14 compile errors in VS2015 debug x64. Should we coordinate our efforts
>>>> in fixing them?
>>>>
>>>> On Wed, Nov 25, 2015 at 11:29 AM, Simon Alexander <
>>>> skalexander at gmail.com> wrote:
>>>>
>>>>> Two of the three failures look like truncation issues (like
>>>>> https://open.cdash.org/testDetails.php?test=395263772&build=4117158)
>>>>>
>>>>> The other (
>>>>> https://open.cdash.org/testDetails.php?test=395264938&build=4117158)
>>>>> is less obvious.
>>>>>
>>>>> If I have time this evening I'll try and have a look at these.
>>>>>
>>>>> Is your standard test build in 32 bit ? That might explain the
>>>>> difference if there are some underlying type assumptions, but not obvious
>>>>> why 2015 would trigger but not 2013.
>>>>>
>>>>>
>>>>>
>>>>> On Wed, 25 Nov 2015 at 11:01 Matt McCormick <
>>>>> matt.mccormick at kitware.com> wrote:
>>>>>
>>>>>> Ah, cool! Here:
>>>>>>
>>>>>> https://open.cdash.org/viewBuildError.php?type=1&buildid=4117158
>>>>>>
>>>>>> Could you please look into the test failures?
>>>>>>
>>>>>> @Hyun Jae, could you please look into the KWStyle warnings?
>>>>>>
>>>>>> Thanks,
>>>>>> Matt
>>>>>>
>>>>>>
>>>>>> On Wed, Nov 25, 2015 at 10:55 AM, Simon Alexander <
>>>>>> skalexander at gmail.com> wrote:
>>>>>> > Sorry, if I wasn't clear - I submitted two builds yesterday from
>>>>>> SIMON-LAP,
>>>>>> > (actually 3 as I wasn't sure the config was right on the first
>>>>>> one). VS2013
>>>>>> > was green, three failures on VS2015 (and 18 warnings). Looks like
>>>>>> a
>>>>>> > truncation problem on the resuts.
>>>>>> >
>>>>>> > On Wed, 25 Nov 2015 at 10:51 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> > wrote:
>>>>>> >>
>>>>>> >> Hi Simon,
>>>>>> >>
>>>>>> >> Thanks for testing.
>>>>>> >>
>>>>>> >> We have a Visual Studio 2015 build on the dashboard that is green:
>>>>>> >>
>>>>>> >> https://open.cdash.org/buildSummary.php?buildid=4117955
>>>>>> >>
>>>>>> >> Are there any different flags? Could you please submit an
>>>>>> Experimental
>>>>>> >> build?
>>>>>> >>
>>>>>> >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T
>>>>>> Submit -C
>>>>>> >> Release
>>>>>> >>
>>>>>> >> from a fresh build tree.
>>>>>> >>
>>>>>> >> Thanks,
>>>>>> >> Matt
>>>>>> >>
>>>>>> >> On Wed, Nov 25, 2015 at 9:07 AM, Simon Alexander <
>>>>>> skalexander at gmail.com>
>>>>>> >> wrote:
>>>>>> >> > Looks like a few problems with x64 build on visual studio 2015 -
>>>>>> do you
>>>>>> >> > have
>>>>>> >> > a test machine in this configuration?
>>>>>> >> >
>>>>>> >> > On Mon, 23 Nov 2015 at 17:53 Matt McCormick <
>>>>>> matt.mccormick at kitware.com>
>>>>>> >> > wrote:
>>>>>> >> >>
>>>>>> >> >> On behalf of the Insight Toolkit community, we are proud to
>>>>>> announce
>>>>>> >> >> that
>>>>>> >> >> ITK 4.9 release candidate 1 has been tagged and is available for
>>>>>> >> >> testing!
>>>>>> >> >>
>>>>>> >> >> Please take this opportunity to test the new features in the
>>>>>> release
>>>>>> >> >> candidate.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> To obtain the source code,
>>>>>> >> >>
>>>>>> >> >> git clone http://itk.org/ITK.git
>>>>>> >> >> cd ITK
>>>>>> >> >> git checkout -q --detach v4.9rc01
>>>>>> >> >>
>>>>>> >> >> For more details, please see the Git documentation [1].
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> A few selected highlights for this release:
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New Remote modules: the Cuberille module for smooth
>>>>>> generation of
>>>>>> >> >> meshes
>>>>>> >> >> from binary segmentation images, and the
>>>>>> AnisotropicDiffusionLBR module
>>>>>> >> >> improved edge-preserving smoothing.
>>>>>> >> >> * Build your own ITK module outside the source tree, add
>>>>>> continuous
>>>>>> >> >> integration testing on GitHub, and easily add Python wrapping
>>>>>> for your
>>>>>> >> >> C++
>>>>>> >> >> algorithms.
>>>>>> >> >> * Python wrapping, including Python 3, builds faster with a more
>>>>>> >> >> standard
>>>>>> >> >> installation
>>>>>> >> >> * Improved performance of itk::Image::GetPixel and operations on
>>>>>> >> >> itk::VariableLengthVector’s
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Please test the release candidate and share your experiences on
>>>>>> the
>>>>>> >> >> mailing list, issue tracker, and Gerrit Code Review. The new
>>>>>> module
>>>>>> >> >> dependency specification mechanism may unearth missing
>>>>>> dependencies for
>>>>>> >> >> projects that use ITK COMPONENTS with the CMake find_package
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> An Experimental build, which demonstrates how the test suite
>>>>>> performs
>>>>>> >> >> on
>>>>>> >> >> your local build system, can be submitted to the dashboard [2]
>>>>>> with:
>>>>>> >> >>
>>>>>> >> >> mkdir ../ITK-build
>>>>>> >> >> cd ../ITK-build
>>>>>> >> >> cmake ../ITK
>>>>>> >> >> ctest -j 4 -M Experimental -T Configure -T Build -T Test -T
>>>>>> Submit
>>>>>> >> >>
>>>>>> >> >> Visual Studio builds must also add “-C Release” to the ctest
>>>>>> command.
>>>>>> >> >>
>>>>>> >> >> Notify the mailing list if there are any unexpected failures.
>>>>>> Testing
>>>>>> >> >> your own applications against the RC is also appreciated.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Congratulations and well done to the 35 contributors to this
>>>>>> release.
>>>>>> >> >> We
>>>>>> >> >> would especially like to recognize the new contributors: Mikhail
>>>>>> >> >> Isakov,
>>>>>> >> >> Betsy McPhail, Alexander Leinoff, Shawn Waldon, Tobias Wood,
>>>>>> Seun
>>>>>> >> >> Odutola,
>>>>>> >> >> Hyun Jae Kang, Lucas Gandel, Adam Snyder, Junjie Bai, Pablo
>>>>>> >> >> Hernandez-Cerdan, Abhishek Tiwari, Eugene Prilepin, Zach
>>>>>> Williamson,
>>>>>> >> >> Luc
>>>>>> >> >> Hermitte, Laurentiu Nicola, and Floris Berendsen.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> The final release is scheduled for mid-December.
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> [1] http://www.itk.org/Wiki/ITK/Git
>>>>>> >> >>
>>>>>> >> >> [2] http://open.cdash.org/index.php?project=Insight
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Features
>>>>>> >> >> ---------------------
>>>>>> >> >>
>>>>>> >> >> Wrapping improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Python 3 supported
>>>>>> >> >> * Wrapping builds much faster due to CastXML binaries
>>>>>> >> >> * LandmarkBasedTransformInitializer now wrapped
>>>>>> >> >> * NumPy bridge with VisualStudio
>>>>>> >> >> * Wrapping for the MinimalPathExtraction module
>>>>>> >> >> * Wrapping is now installed into Python’s site-packages
>>>>>> directory in
>>>>>> >> >> the
>>>>>> >> >> “itk” package
>>>>>> >> >> * Wrapping package size is decreased
>>>>>> >> >> * Better package portability on Mac OSX
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> New Remote Modules
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Cuberille
>>>>>> >> >> * Insight Journal Article: http://hdl.handle.net/10380/3186
>>>>>> >> >> * AnisotropicDiffusionLBR
>>>>>> >> >> * Insight Journal Article: http://hdl.handle.net/10380/3505
>>>>>> >> >> * Web browser reproducibility:
>>>>>> >> >> http://www.kitware.com/blog/home/post/942
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Core Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * External Modules can now be developed outside of the ITK
>>>>>> source tree
>>>>>> >> >> and
>>>>>> >> >> on GitHub
>>>>>> >> >> * Details: http://www.kitware.com/blog/home/post/997
>>>>>> >> >> * New utilities in itk::Math:
>>>>>> >> >> * AlmostEquals
>>>>>> >> >> * NotAlmostEquals
>>>>>> >> >> * ExactlyEquals
>>>>>> >> >> * NotExactlyEquals
>>>>>> >> >> * New itk::NumericTraits
>>>>>> >> >> * IsInteger
>>>>>> >> >> * IsSigned
>>>>>> >> >> * Improved C++11 support
>>>>>> >> >> * New ITK_DELETE_FUNCTION macro for “=delete”
>>>>>> >> >> * New ITK_NOEXCEPT macro for the “noexcept” keyword
>>>>>> >> >> * Improved capabilities of itk::ResourceProbe and
>>>>>> >> >> itk::ResourceProbesCollectorBase
>>>>>> >> >> * Improve numerical stability in VNL eigen system estimation
>>>>>> >> >> * itksys_ios:: and itksys_stl:: have been remove (use std::)
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Filtering Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Generate a FlatStructuringElement from an image
>>>>>> >> >> * WarpImageFilter support VectorImage’s
>>>>>> >> >> * ConvertLabelMap supports different LabelMap types
>>>>>> >> >> * ImageToPathFilter moved from the ITKReview to the ITKPath
>>>>>> module
>>>>>> >> >> * itk::MovingHistogramImageFilter moved to the
>>>>>> ITKImageFilterBase
>>>>>> >> >> module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Registration Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Point-set registration with time-varying B-splines
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Build Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Module dependencies can now be specified as public / private /
>>>>>> >> >> compile /
>>>>>> >> >> test
>>>>>> >> >> * BUILD_EXAMPLES CMake option is now OFF by default
>>>>>> >> >> * Option to export all library symbols on Windows:
>>>>>> >> >> * Details: http://www.kitware.com/blog/home/post/939
>>>>>> >> >> * Expat third party library is now name mangled
>>>>>> >> >> * Many more modules can be built as shared libraries
>>>>>> >> >> * KWStyle is automatically built and configured when tests are
>>>>>> built
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Performance Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * New MetaProgrammingLibrary namespace (itk::mpl) holds members
>>>>>> for
>>>>>> >> >> metaprogramming
>>>>>> >> >> * itk::mpl::{TrueType,FalseType}
>>>>>> >> >> * itk::mpl::{If,Not,And,Or,Xor}
>>>>>> >> >> * itk::mpl::EnableIf
>>>>>> >> >> * itk::mpl::IsBaseOf
>>>>>> >> >> * itk::mpl::IsConvertible
>>>>>> >> >> * itk::mpl::IsNumber
>>>>>> >> >> * itk::mpl::IsSame
>>>>>> >> >> * itk::mpl::PromoteType
>>>>>> >> >> * Image::GetPixel performance improvements
>>>>>> >> >> * Many itk::VariableLengthVector performance improvements
>>>>>> >> >> * AdaptiveHistogramEqualization uses a moving histogram
>>>>>> >> >> * WarpImageFilter performance improvements
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Documentation Improvements
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Updates to the Software Guide, Doxygen, Wiki and Sphinx
>>>>>> Examples
>>>>>> >> >> * ITK Software Guide improvements
>>>>>> >> >> * How to use Python wrapping
>>>>>> >> >> * How to create an ITK module
>>>>>> >> >> * Improvements to segmentation examples
>>>>>> >> >> * Expanded Canny edge detection example
>>>>>> >> >> * Expanded tree container example
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Third Party Library Updates
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * FFTW updated to latest upstream
>>>>>> >> >> * Build with recent OpenCV 2 and 3
>>>>>> >> >> * Build with the latest VTK
>>>>>> >> >> * PNG update to the latest upstream
>>>>>> >> >> * GDCM updated to the latest upstream
>>>>>> >> >> * KWSys updated to the latest upstream
>>>>>> >> >> * MINC updated to the latest upstream
>>>>>> >> >> * SWIG updated to the latest upstream
>>>>>> >> >> * Third party PNG and MINC are now Git subtrees
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Style improvements -- ITK gets more stylish with every release!
>>>>>> >> >>
>>>>>> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >> * Private copy constructors and operator= use
>>>>>> ITK_DELETE_FUNCTION
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Improved code coverage -- we are at 84.9%!
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * *Lots* of important bug fixes
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> * And much more! See details in the log below.
>>>>>> >> >> ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Changes from v4.8.0..v4.9rc01
>>>>>> >> >> --------------------------------------------
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> Abhishek Tiwari (1):
>>>>>> >> >> BUG: "tmpImageIndex" not initialized to 0.
>>>>>> >> >>
>>>>>> >> >> Adam Snyder (1):
>>>>>> >> >> PERF: Reworked MMI Threading using a per-thread buffer
>>>>>> >> >>
>>>>>> >> >> Alexander Leinoff (6):
>>>>>> >> >> ENH: Adds IsInteger and IsSigned to NumericTraits.
>>>>>> >> >> COMP: Doxygen itkMath.h 'OneValue()' could not be resolved.
>>>>>> >> >> ENH: Adds ExactlyEquals and NotExactlyEquals functions to
>>>>>> >> >> itkMath.h
>>>>>> >> >> COMP: Removes floating-point equality checks
>>>>>> >> >> ENH: COMP: Adds support for complex values to
>>>>>> Math::AlmostEquals
>>>>>> >> >> ENH: Updates fftw dependency
>>>>>> >> >>
>>>>>> >> >> Arnaud Gelas (5):
>>>>>> >> >> COMP: fix warning (unused local typedef)
>>>>>> >> >> COMP: simplify ITKVideoBridgeOpenCV dependency
>>>>>> >> >> DOC: add doxgen documentation for
>>>>>> >> >> BinaryImageToLevelSetImageAdaptor
>>>>>> >> >> ENH: add tests to exercise
>>>>>> itk::ThreadedIteratorRangePartitioner
>>>>>> >> >> COMP: fix compilation error with OpenCV2 and OpenCV3
>>>>>> >> >>
>>>>>> >> >> Betsy McPhail (1):
>>>>>> >> >> BUG: Improve buffer alignment in OctreeNode .
>>>>>> >> >>
>>>>>> >> >> Bill Hoffman (2):
>>>>>> >> >> ENH: Use new CMake Windows export symbol dll feature.
>>>>>> >> >> COMP: Put vnl_export.h in the list of sources so it gets
>>>>>> >> >> installed.
>>>>>> >> >>
>>>>>> >> >> Bill Lorensen (4):
>>>>>> >> >> COMP: VTkGlue linker errors
>>>>>> >> >> BUG: Inappropriate use of AlmostEquals
>>>>>> >> >> ENH: Bump tag for wiki examples
>>>>>> >> >> ENH: Better layout strategy
>>>>>> >> >>
>>>>>> >> >> Brad King (3):
>>>>>> >> >> ENH: Remove use of include <itksys/ios/*> and itksys_ios::*
>>>>>> >> >> ENH: Remove use of include <itksys/stl/*> and itksys_stl::*
>>>>>> >> >> ENH: Update CMake Policy settings in Testing/TestExternal
>>>>>> project
>>>>>> >> >>
>>>>>> >> >> Bradley Lowekamp (31):
>>>>>> >> >> BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >> ENH: Enable base classes for templates of landmark
>>>>>> initializer
>>>>>> >> >> STYLE: Use "Swap" for ITK member name
>>>>>> >> >> BUG: Demonstrate Eigen analysis failure
>>>>>> >> >> BUG: Fix computation of Eigen analysis
>>>>>> >> >> ENH: Update DiscreteHessianGaussian Test baseline
>>>>>> >> >> ENH: Correctly demonstrate float point Eigen failure
>>>>>> >> >> ENH: compile vnl_math_hypot, and use at least double
>>>>>> >> >> ENH: Adding initial update script from used libpng version.
>>>>>> >> >> ENH: removing non-subtree files for itkpng
>>>>>> >> >> ENH: Ported ITK changes for building to subtree merged code
>>>>>> >> >> ENH: Update libpng update script for v1.6.9
>>>>>> >> >> BUG: Use ParameterValueType for computation of landmark
>>>>>> affine
>>>>>> >> >> ENH: Wrap LandmarkBasedTransformInitializer
>>>>>> >> >> BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >> ENH: Update itkpng zlib, configuration, and rename
>>>>>> >> >> ENH: Update itkpng name mangling
>>>>>> >> >> BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >> BUG: Increase tolerance for
>>>>>> PhysicsBasedNonRigidRegistrationMethod
>>>>>> >> >> BUG: Demonstrate side effect on registration due to
>>>>>> BSplineScatter
>>>>>> >> >> change
>>>>>> >> >> ENH: Move MovingHistogramImageFilter base classes to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >> BUG: Avoid potential exception in itk::Object::UnRegister
>>>>>> >> >> BUG: Avoid null deference in PrintSelf with default
>>>>>> construction
>>>>>> >> >> BUG: Use const pointer in Set method for constant
>>>>>> ReferenceImage
>>>>>> >> >> ivar
>>>>>> >> >> ENH: Optimize AdaptiveHistogramEqualization with
>>>>>> MovingHistogram
>>>>>> >> >> base
>>>>>> >> >> COMP: address sign unsigned comparison warning
>>>>>> >> >> COMP: Address signed unsigned comparison warning
>>>>>> >> >> COMP: Address unused member variable and methods in
>>>>>> anonymous ns
>>>>>> >> >> BUG: Fix segfault when with empty IsolatedWatershed
>>>>>> Threshold
>>>>>> >> >> range
>>>>>> >> >> BUG: Adjust intensity tolerance for PhysicsBasedNonRigid
>>>>>> test
>>>>>> >> >> BUG: Reduce number of targets with MSVC
>>>>>> >> >>
>>>>>> >> >> Davis Vigneault (7):
>>>>>> >> >> DOC: Minor improvements to segmentation examples.
>>>>>> >> >> DOC: Expanded Canny Edge Detection Example
>>>>>> >> >> DOC: Expanded TreeContainer Example
>>>>>> >> >> COMP: Warnings in itkVTKImageExport when compiling with
>>>>>> c++11
>>>>>> >> >> COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >> COMP: Update Git Tag for Subdivision Module
>>>>>> >> >> COMP: Warnings in FFTW Classes when compiling with c++11
>>>>>> >> >>
>>>>>> >> >> Dženan Zukić (1):
>>>>>> >> >> STYLE: better formatting of the "usage" message
>>>>>> >> >>
>>>>>> >> >> Eugene Prilepin (1):
>>>>>> >> >> BUG: Fix a template name formation in python wrappings
>>>>>> >> >>
>>>>>> >> >> Floris Berendsen (1):
>>>>>> >> >> STYLE: Improve naming conventions in comments.
>>>>>> >> >>
>>>>>> >> >> Hans Johnson (29):
>>>>>> >> >> STYLE: Instrument for FixedParameters typedef
>>>>>> >> >> BUG: Demonstrate DisplacementTransformFailure
>>>>>> >> >> BUG: FixedParameters should be double precision
>>>>>> >> >> STYLE: Minor code style issues for MGHIO
>>>>>> >> >> COMP: Update to version for WikiExamples
>>>>>> >> >> ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >> ENH: Update MGHIO to be shared lib
>>>>>> >> >> ENH: Provide consistent floating point comparisons
>>>>>> >> >> BUG: Fix MGHIO to fix write failures
>>>>>> >> >> PERF: Remove floating point as sentinal value
>>>>>> >> >> COMP: Const correctness needs to be maintained
>>>>>> >> >> BUG: Preserve backwards compatibility
>>>>>> >> >> DOC: Provide consistent naming in comments
>>>>>> >> >> ENH: Conversion between transform type tolerance
>>>>>> >> >> STYLE: Prefer initialization to assignment
>>>>>> >> >> ENH: Missing ITK_OVERRIDE
>>>>>> >> >> COMP: Need to propagate ITKGDCM
>>>>>> >> >> COMP: Need to propagate ITKGDCM
>>>>>> >> >> COMP: Add missing ITK_OVERRIDE
>>>>>> >> >> STYLE: Minor code style issues for MGHIO
>>>>>> >> >> COMP: Update to version for WikiExamples
>>>>>> >> >> ENH: Update Sphinx for ITK 4.8.0
>>>>>> >> >> ENH: Update MGHIO to be shared lib
>>>>>> >> >> BUG: Fix MGHIO to fix write failures
>>>>>> >> >> ENH: C++11 allows for rigorous =delete
>>>>>> >> >> COMP: Remove unnecessary failing assert test
>>>>>> >> >> ENH: Ignore internal files for the Clion editor
>>>>>> >> >> COMP: Fix VNL compilation for wider C++11 support
>>>>>> >> >> BUG: In configuration test need to mirror code
>>>>>> >> >>
>>>>>> >> >> Hyun Jae Kang (27):
>>>>>> >> >> BUG: Remove std::cout calls from class
>>>>>> >> >> BUG: Avoid an unexpected output of static_cast
>>>>>> >> >> BUG: Update python example codes for ImageRegistration
>>>>>> >> >> BUG: Retrieve the missed wrap file
>>>>>> >> >> BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >> BUG: Fix HDF5 CMake configuration with VS2015
>>>>>> >> >> BUG: Fix a compilation issue on ITK4 with FFTW and shared
>>>>>> >> >> libraries
>>>>>> >> >> BUG: Fixed older XCode linking error
>>>>>> >> >> ENH: Use CastXML binaries when building with x86_64 Mac OS
>>>>>> X
>>>>>> >> >> BUG: Remove std::cout calls from class
>>>>>> >> >> BUG: itkVTKImageIO class does not handle blank lines in
>>>>>> VTK file
>>>>>> >> >> header.
>>>>>> >> >> BUG: Fixed older XCode linking error
>>>>>> >> >> ENH: Add automatic KWStyle build and configuration setup
>>>>>> >> >> COMP: KWStyle shadow, format-nonliteral and
>>>>>> autological-compare
>>>>>> >> >> warning.
>>>>>> >> >> COMP: Fixed the warning messages from itkGPU Module
>>>>>> >> >> COMP: Fixed a warning message of unused-private-field
>>>>>> >> >> COMP: Apply latest version of KWStyle
>>>>>> >> >> COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >> COMP: Update KWStyle to fix its additional warning messages
>>>>>> >> >> COMP: Fix data-conversion warning messages on Windows
>>>>>> >> >> ENH: Update itkResourceProbe to calculate statistical data
>>>>>> >> >> COMP: Fix data-conversion warning messages on VS14
>>>>>> >> >> COMP: Fixed 'std::sqrt' : ambiguous call to overloaded
>>>>>> function
>>>>>> >> >> ENH: Update the Report() function of
>>>>>> >> >> itkResourceProbesCollectorBase
>>>>>> >> >> COMP: Fix data-conversion warning message on
>>>>>> itkResourceProbe
>>>>>> >> >> COMP: Fix additional warning messages of KWStyle
>>>>>> >> >> COMP: Fix data-conversion warning messages
>>>>>> >> >>
>>>>>> >> >> Jon Haitz Legarreta (6):
>>>>>> >> >> ENH: Add test for itkStatisticsUniqueLabelMapFilter
>>>>>> >> >> BUG: Fix compilation issues for
>>>>>> StatisticsUniqueLabelMapFilterTest
>>>>>> >> >> BUG: Fix comparison issues for
>>>>>> itkStatisticsUniqueLabelMapFilter
>>>>>> >> >> BUG: Test for StatisticsUniqueLabelMapFilter stability
>>>>>> >> >> ENH: Add test for itkParametricStpaceToImageSpaceFilter
>>>>>> >> >> ENH: Improve code coverage for
>>>>>> >> >> itkParametricSpaceToImageSpaceMeshFilter
>>>>>> >> >>
>>>>>> >> >> Julien Michel (1):
>>>>>> >> >> ENH: Support of VectorImage as template parameters for
>>>>>> >> >> WarpImageFilter
>>>>>> >> >>
>>>>>> >> >> Junjie Bai (2):
>>>>>> >> >> BUG: ConvertLabelMap with different LabelMapTypes
>>>>>> >> >> BUG: LabelObject CopyAttribute support different
>>>>>> LabelObject type
>>>>>> >> >>
>>>>>> >> >> KWSys Robot (4):
>>>>>> >> >> KWSys 2015-07-10 (c9336bcf)
>>>>>> >> >> KWSys 2015-07-30 (f63febb7)
>>>>>> >> >> KWSys 2015-08-24 (cdaf522c)
>>>>>> >> >> KWSys 2015-08-28 (dc3fdd7f)
>>>>>> >> >>
>>>>>> >> >> LIBPNG Upstream (2):
>>>>>> >> >> PNG 2009-04-06 (e68f5a36)
>>>>>> >> >> PNG 2014-02-05 (3e753eb8)
>>>>>> >> >>
>>>>>> >> >> Laurentiu Nicola (2):
>>>>>> >> >> PERF: Avoid temporary smartptr in ProcessObject::GetInput
>>>>>> >> >> PERF: Optimize WarpImageFilter by avoiding refcount
>>>>>> bouncing
>>>>>> >> >>
>>>>>> >> >> Luc Hermitte (8):
>>>>>> >> >> PERF: itk::Image::GetPixel() performance improvment.
>>>>>> >> >> PERF: Performance enhancements on VariableLengthVectors
>>>>>> 1/...
>>>>>> >> >> ENH: Dependencies on itkVariableLengthVector.h reduced
>>>>>> >> >> BUG: Error in VariableLengthVector Unit Tests
>>>>>> >> >> PERF: Performance enhancements on VLV 2/...
>>>>>> >> >> PERF: Performances enhancements on VLV 3/...
>>>>>> >> >> COMP: Fix signed/unsigned warnings
>>>>>> >> >> BUG: std::copy/fill on empty VLV
>>>>>> >> >>
>>>>>> >> >> Lucas Gandel (4):
>>>>>> >> >> ENH: Move ImageToPathFilter from ITKReview to ITKPath
>>>>>> module.
>>>>>> >> >> BUG: Fixing ImageToPathFilter wrapping call from Review
>>>>>> Module
>>>>>> >> >> STYLE: Fix KWStyle dashboard errors
>>>>>> >> >> BUG: Fix external module BUILD_SHARED_LIBS status
>>>>>> >> >>
>>>>>> >> >> Mathieu Malaterre (1):
>>>>>> >> >> BUG: Name mangle the included expat third party library.
>>>>>> >> >>
>>>>>> >> >> Matthew McCormick (94):
>>>>>> >> >> ENH: Change itkSystemInformationTest to
>>>>>> itkCMakeConfigurationTest.
>>>>>> >> >> ENH: Add AnisotropicDiffusionLBR Remote Module.
>>>>>> >> >> ENH: Bump ITK version to 4.9.0.
>>>>>> >> >> BUG: Remove std::cout calls from classes.
>>>>>> >> >> COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >> BUG: Implement UpdateLargestPossibleRegion for
>>>>>> >> >> ImageToVTKImageFilter.
>>>>>> >> >> COMP: Add link interface specification for wrapping
>>>>>> >> >> target_link_libraries.
>>>>>> >> >> STYLE: Fix indentation in itkMINCTransformIOFactory.cxx.
>>>>>> >> >> COMP: Fix MINCTransformIO factory registration.
>>>>>> >> >> COMP: Add -D_LARGEFILE64_SOURCE for HDF5 with Emscripten-1.
>>>>>> >> >> COMP: Remove unknown doxygen command in
>>>>>> AnisotropicDiffusionLBR.
>>>>>> >> >> BUG: Initialize mutex for 32 bit AtomicInt.
>>>>>> >> >> ENH: Use CastXML binaries when building with x86_64 Linux.
>>>>>> >> >> STYLE: Rename gccxml -> castxml in {idx,igenerator}.py.
>>>>>> >> >> COMP: Disable the gold linker for static builds on Ubuntu
>>>>>> 14.04.
>>>>>> >> >> ENH: Use Windows binaries for CastXML.
>>>>>> >> >> ENH: Add better scoping in igenerator.py.
>>>>>> >> >> BUG: Fix CMAKE_BUILD_TYPE initialization with Ninja + MSVC.
>>>>>> >> >> BUG: LevelSetsv4 used signed char instead of char.
>>>>>> >> >> ENH: Add better scoping to idx.py.
>>>>>> >> >> COMP: Define newSize and oldSize in VariableLengthVector.
>>>>>> >> >> STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >> DOC: Correct spelling of Continuous.
>>>>>> >> >> ENH: Add more progress information to
>>>>>> IterativeClosestPoint2.
>>>>>> >> >> BUG: Build BridgeNumPy with Visual Studio.
>>>>>> >> >> ENH: Add ITKModuleExternal.cmake
>>>>>> >> >> COMP: Wrap Image< bool, D > for FlatStructuringElement.
>>>>>> >> >> BUG: Use CastXML binary built in Release.
>>>>>> >> >> BUG: ContinuousIndex should not be templated over
>>>>>> TCoordRep.
>>>>>> >> >> COMP: Set CMP0054 to new.
>>>>>> >> >> COMP: Address line length too long for Software Guide.
>>>>>> >> >> COMP: Fix CannyEdgeDetectionImageFilter.cxx types.
>>>>>> >> >> BUG: Support Python 3 wrapping module initialization.
>>>>>> >> >> BUG: Update itkTemplate.py for Python 3.
>>>>>> >> >> BUG: Update itkExtras.py for Python 3.
>>>>>> >> >> BUG: Prevent Python callback addition recursion.
>>>>>> >> >> BUG: Fix test scripts for Python 3.
>>>>>> >> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >> ENH: Allow projects to build against an external module.
>>>>>> >> >> ENH: Replace CABLE_CONFIGURATION with ITK_WRAPPING_PARSER.
>>>>>> >> >> ENH: Rename _cable_ to _wrappers_.
>>>>>> >> >> BUG: Replace __GCCXML__ with CABLE_CONFIGURATION.
>>>>>> >> >> BUG: Define ITK_WRAPPING_PARSER when wrapping.
>>>>>> >> >> COMP: Do not use C++11 alignas in itkAlignedTypedef.
>>>>>> >> >> ENH: Bump CMakeLists.txt version to 4.8.1.
>>>>>> >> >> BUG: Pass the CMAKE_CXX_FLAGS to castxml.
>>>>>> >> >> ENH: Bump CastXML version to 2015-30-29.
>>>>>> >> >> ENH: Bump LLVM / Clang to 3.7.0.
>>>>>> >> >> COMP: Avoid itklibminc linking with ITK_USE_SYSTEM_HDF5.
>>>>>> >> >> COMP: Add missing ITKIOImageBase dependency for
>>>>>> ITKTransformMINC.
>>>>>> >> >> COMP: Use itkSimpleNewMacro in
>>>>>> >> >> ThreadedIteratorRangePartitionerTest.
>>>>>> >> >> ENH: Add wrapping support for building modules externally.
>>>>>> >> >> BUG: Fix KWStyle test paths when building a module
>>>>>> externally.
>>>>>> >> >> ENH: Add Cuberille Remote module.
>>>>>> >> >> COMP: Remove carriage returns from Cuberille remote.
>>>>>> >> >> COMP: Remove unused argument in ConditionVariableNoThreads.
>>>>>> >> >> DOC: Correct spelling of Continuous.
>>>>>> >> >> ENH: Bump the MinimalPathExtraction Remote to 2015-10-20.
>>>>>> >> >> COMP: Fix KernelTransform SetFixedParameters argument type.
>>>>>> >> >> STYLE: Use prefix increment operator in ImageBase.
>>>>>> >> >> COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >> Revert "COMP: Put vnl_export.h in the list of sources so
>>>>>> it gets
>>>>>> >> >> installed."
>>>>>> >> >> BUG: Revert "BUG: ConvertLabelMap with different
>>>>>> LabelMapTypes"
>>>>>> >> >> ENH: Marking wrapping CMake configuration variables as
>>>>>> advanced.
>>>>>> >> >> STYLE: Rename CASTXML to CASTXML_EXECUTABLE.
>>>>>> >> >> COMP: Non-virtual copy attribute members in LabelMap
>>>>>> cannot have
>>>>>> >> >> override.
>>>>>> >> >> COMP: Add wrapping for
>>>>>> AdaptiveHistogramEqualizationImageFilter.
>>>>>> >> >> COMP: Add itkMacro.h to itkPromoteType.h for ITK_EXCEPT.
>>>>>> >> >> ENH: Remove CMake version check in
>>>>>> ITKModuleHeaderTest.cmake
>>>>>> >> >> BUG: Improve KWStyle ExternalProject utilization.
>>>>>> >> >> ENH: Remove old KWStyle build script.
>>>>>> >> >> COMP: Address VariableLengthVector Doxygen rhs @param not
>>>>>> found.
>>>>>> >> >> ENH: Rename WRAPPING_LIBRARY_GROUPS to
>>>>>> WRAPPING_SUBMODULE_ORDER.
>>>>>> >> >> ENH: Install Python bindings into site-packages.
>>>>>> >> >> ENH: Improve readability of Python site-packages path
>>>>>> detection.
>>>>>> >> >> COMP: DiscreteGaussianDerivativeImageFilter unsigned
>>>>>> expression
>>>>>> >> >> warning.
>>>>>> >> >> BUG: ITKCommon publically depends on ITKDoubleConversion.
>>>>>> >> >> COMP: Improve scoping in CovariantVectorGeometryTest.
>>>>>> >> >> ENH: Improves names and export of module dependencies.
>>>>>> >> >> STYLE: Improve namespace bracket style in itkIsConvertible.
>>>>>> >> >> COMP: Set CMP0054 to new.
>>>>>> >> >> BUG: Remove unused wrapping files.
>>>>>> >> >> BUG: Do install install wrapping development files.
>>>>>> >> >> ENH: Add WRAP_ITK_INSTALL_COMPONENT_IDENTIFIER.
>>>>>> >> >> BUG: Remove duplicate inclusion of wrapping submodules.
>>>>>> >> >> COMP: Do not use C++ style comments for Doxygen cond.
>>>>>> >> >> BUG: Fix detection of the gold linker.
>>>>>> >> >> BUG: Update Python package installation locations.
>>>>>> >> >> ENH: Bump CMakeLists.txt version to 4.8.2.
>>>>>> >> >> ENH: Change BUILD_EXAMPLES default to OFF.
>>>>>> >> >> BUG: Use 'from itk import ITKCommon' in module2module test.
>>>>>> >> >> COMP: Link to VTK Python when built with Kits support.
>>>>>> >> >> BUG: Install itk_minc2.h header.
>>>>>> >> >> COMP: ITKIOMINC has a public dependency on ITKIOImageBase.
>>>>>> >> >>
>>>>>> >> >> Michka Popoff (9):
>>>>>> >> >> ENH: Update to swig 3.0.7
>>>>>> >> >> ENH: Do not link against specific Python library on OS X
>>>>>> >> >> COMP: Fix wrapping warnings when building with
>>>>>> >> >> ITK_WRAP_IMAGE_DIMS=2
>>>>>> >> >> COMP: Add missing wrapping for TransformBase
>>>>>> >> >> COMP: Use ITK's pygccxml by correctly setting up the
>>>>>> sys.path
>>>>>> >> >> COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >> COMP: Move MovingHistogramImageFilterBase wrapping to
>>>>>> >> >> ImageFilterBase
>>>>>> >> >> module
>>>>>> >> >> COMP: Disable incompatible modules when using Python 3
>>>>>> wrapping
>>>>>> >> >> ENH: Allow operations on Indexes and Offsets in Python
>>>>>> >> >>
>>>>>> >> >> Mikhail Isakov (1):
>>>>>> >> >> BUG: DiffusionTensor3DReconstruction segfault if no
>>>>>> baseline image
>>>>>> >> >>
>>>>>> >> >> Nick Tustison (5):
>>>>>> >> >> BUG: Set a default b-spline epsilon.
>>>>>> >> >> ENH: Adding testing for closed loop.
>>>>>> >> >> BUG: Updating B-spline classes with the same epsilon
>>>>>> strategy.
>>>>>> >> >> PERF: Switch vnl_vectors for fixed arrays.
>>>>>> >> >> ENH: Point-set registration with time-varying B-spline.
>>>>>> >> >>
>>>>>> >> >> Olivier Commowick (3):
>>>>>> >> >> BUG: Correct discrepancy in tridiagonal reduction wrt VNL
>>>>>> eigen
>>>>>> >> >> system
>>>>>> >> >> BUG: Correct under/overflows in vnl_math_hypot (taken from
>>>>>> pythag
>>>>>> >> >> from V3P)
>>>>>> >> >> BUG: Switch eigenvalues computation to double
>>>>>> >> >>
>>>>>> >> >> Pablo Hernandez-Cerdan (2):
>>>>>> >> >> ENH: Help class for itkFlatStructuringElement with
>>>>>> constructor
>>>>>> >> >> from
>>>>>> >> >> images.
>>>>>> >> >> COMP: Fix test errors and warnings in
>>>>>> FlatStructuringElement.
>>>>>> >> >>
>>>>>> >> >> Seun Odutola (1):
>>>>>> >> >> COMP: Fixed name clash with Apple header (check Macro),
>>>>>> renamed
>>>>>> >> >> check
>>>>>> >> >> to Check
>>>>>> >> >>
>>>>>> >> >> Shawn Waldon (1):
>>>>>> >> >> COMP: Set target OS X version in environment for tools
>>>>>> using
>>>>>> >> >> compiler
>>>>>> >> >>
>>>>>> >> >> Simon Alexander (1):
>>>>>> >> >> BUG: incorrect closest point computation
>>>>>> >> >>
>>>>>> >> >> Tobias Wood (2):
>>>>>> >> >> BUG: LBFGSB was printing messages even with debug switched
>>>>>> off.
>>>>>> >> >> BUG: Removed an unguarded print statement.
>>>>>> >> >>
>>>>>> >> >> Vladimir S. FONOV (9):
>>>>>> >> >> BUG: Missing ITKIOMINC_EXPORT on __Private()
>>>>>> >> >> COMP: Changing the order of HDF5 library components
>>>>>> >> >> COMP: Splitting up IOMINC module into two parts: MINC and
>>>>>> >> >> Transform
>>>>>> >> >> STYLE: updated comments to properly reference LIBMINC
>>>>>> >> >> ENH: Add script to merge upstream MINC as a subtree
>>>>>> >> >> MINC 2015-07-23 (c033d431)
>>>>>> >> >> COMP: Update MINC CMake code
>>>>>> >> >> MINC 2015-08-18 (6d7e3ba8)
>>>>>> >> >> MINC 2015-09-13 (95cd5374)
>>>>>> >> >>
>>>>>> >> >> Xiaoxiao Liu (1):
>>>>>> >> >> DOC: update email address for xiaoxiao.
>>>>>> >> >>
>>>>>> >> >> Zach Williamson (10):
>>>>>> >> >> BUG: Use correct libraries for ImageFusion tests
>>>>>> >> >> ENH: Consolidate Library Dependencies
>>>>>> >> >> COMP: Add a missing link to Review module
>>>>>> >> >> COMP: Use correct linking macro in DCMTK
>>>>>> >> >> BUG: Use correct libraries for TestKernel tests
>>>>>> >> >> COMP: Fix inconsistant naming of
>>>>>> GPUPDEDeformableRegistration
>>>>>> >> >> ENH: Use new linking system macros
>>>>>> >> >> PERF: Avoid searching private dependencies for include
>>>>>> directories
>>>>>> >> >> COMP: Recover missing dependencies
>>>>>> >> >> ENH: use new linking macros in Filtering module
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >> -----------------------------------------------------
>>>>>> >> >> Errors or omissions? Please fix them here:
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> >> >>
>>>>>> https://docs.google.com/document/d/1j3IAZFfi0ToO8N6hTr0fVTTMmHIMkXAxx0AsAajsYuM/edit
>>>>>> >> >> _____________________________________
>>>>>> >> >> Powered by www.kitware.com
>>>>>> >> >>
>>>>>> >> >> Visit other Kitware open-source projects at
>>>>>> >> >> http://www.kitware.com/opensource/opensource.html
>>>>>> >> >>
>>>>>> >> >> Kitware offers ITK Training Courses, for more information visit:
>>>>>> >> >> http://www.kitware.com/products/protraining.php
>>>>>> >> >>
>>>>>> >> >> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> >> >> http://www.itk.org/Wiki/ITK_FAQ
>>>>>> >> >>
>>>>>> >> >> Follow this link to subscribe/unsubscribe:
>>>>>> >> >> http://public.kitware.com/mailman/listinfo/insight-users
>>>>>>
>>>>>
>>>>> _______________________________________________
>>>>
>>>>
>>>>> Powered by www.kitware.com
>>>>>
>>>>> Visit other Kitware open-source projects at
>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>
>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>
>>>> http://kitware.com/products/protraining.php
>>>>
>>>>
>>>>>
>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>
>>>>> Follow this link to subscribe/unsubscribe:
>>>>>
>>>> http://public.kitware.com/mailman/listinfo/insight-developers
>>>>>
>>>>>
>>>>
>>
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