[ITK-users] Writing dicom series in SimpleITK

Sara Gh sg.ele.eng at gmail.com
Mon Nov 7 22:38:35 EST 2016


Hello,

I am storing a series of Dicom images using "ImageSeriesWriter" in
SimpleITK:

def writeSeries(imagein,outDir):
    writer = sitk.ImageSeriesWriter()
    filenames = [ outDir+'MR_{0:04}.dcm'.format(i) for i in
range(imagein.GetSize()[2])]
    writer.SetFileNames(filenames)
    writer.Execute(imagein)

However, I am not able to read in the stored series and
"GetGDCMSeriesFileNames" reads only one of the Dicom images, not the wholes
series. I guess it is something related to the metadata of the stored
series, but I couldn't fix it. I would be thankful if you could help me
with it.

Regards,
Sara
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