[ITK-users] 答复: 答复: 答复: 答复: watershed

Sun May 21 20:03:49 EDT 2017

Hello,

I am glad you were able to run the program. It can be difficult to find the
correct parameters to obtain the desired results. You can read the Insight
Journal publication associated to this filter [1] to understand which
parameters are available and how to integrate this filter in a pipeline.
You can also look at the ITK tests for that filter to see the values that
are used in that case [2][3].

Hope this helps,
Francois

[1] http://www.insight-journal.org/browse/publication/92
[2]
https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Watersheds/test/CMakeLists.txt#L31-L55
[3]
https://github.com/InsightSoftwareConsortium/ITK/blob/master/Modules/Segmentation/Watersheds/test/itkMorphologicalWatershedFromMarkersImageFilterTest.cxx

On Sat, May 20, 2017 at 2:55 AM, Zou Jing <zjinger at hotmail.com> wrote:

> Hello,
>
> Now I can run the program, but the result image  is all write.
> ------------------------------
> *发件人:* Zou Jing
> *发送时间:* 2017年5月20日 11:37:00
> *收件人:* Francois Budin
> *抄送:* Chr. Rossmanith; insight-users at itk.org
> *主题:* 答复: [ITK-users] 答复: 答复: 答复: watershed
>
>
> Thank you very much.
>
> I've found the filter, but I have trouble in implementing it.
>
> Have you ever tested that.
>
> My error is this:
>
> Debug Error!
>
> Program:
>
> ...Debug\itkMorphologicalWatershedFromMarkersImageFilterTest.exe
>
> R6010
> -abort() has been called
>
> (Please Retry to debug the application)
>
>
> ------------------------------
> *发件人:* Francois Budin <francois.budin at kitware.com>
> *发送时间:* 2017年5月19日 20:46:53
> *收件人:* Zou Jing
> *抄送:* Chr. Rossmanith; insight-users at itk.org
> *主题:* Re: [ITK-users] 答复: 答复: 答复: watershed
>
> Hello Zou Jing,
>
> What do you mean by the fact that you cannot find the filter? Do you have
> compilation errors? Or you cannot find the implementation of the filter in
> ITK? If it is the latter, you can find the filter is here [1]
> Let me know if this helps,
>
> Francois
> [1] https://github.com/InsightSoftwareConsortium/ITK/
> blob/v4.11.0/Modules/Nonunit/Review/include/itkMorphologicalWatershedFromM
> arkersImageFilter.hxx
>
> <https://github.com/InsightSoftwareConsortium/ITK/blob/v4.11.0/Modules/Nonunit/Review/include/itkMorphologicalWatershedFromMarkersImageFilter.hxx>
> InsightSoftwareConsortium/ITK
> <https://github.com/InsightSoftwareConsortium/ITK/blob/v4.11.0/Modules/Nonunit/Review/include/itkMorphologicalWatershedFromMarkersImageFilter.hxx>
> github.com
> ITK - Insight Segmentation and Registration Toolkit -- Mirror
>
>
>
> On Fri, May 19, 2017 at 3:14 AM, Zou Jing <zjinger at hotmail.com> wrote:
>
>> Thank you,I've enabled that in CMake.
>>
>> But I still cannot find  itkMorphologicalWatershedFromMarkersImageFilter
>> ------------------------------
>> *发件人:* Insight-users <insight-users-bounces at itk.org> 代表 Chr. Rossmanith <
>> cr at neuro.ma.uni-heidelberg.de>
>> *发送时间:* 2017年5月19日 13:53:48
>> *收件人:* insight-users at itk.org
>> *主题:* Re: [ITK-users] 答复: 答复: watershed
>>
>> It's an option in cmake: Module_ITKReview, you have to toggle to advanced
>> mode (t in ccmake) to find it.
>>
>> Christina
>>
>>  On 19.05.2017 05:27, Zou Jing wrote:
>>
>> Thank you.
>>
>> I am sorry that I don't know how to enable "review".
>>
>> I'm a novice.
>>
>> Can you help me?Thanks very much.
>> ------------------------------
>> *发件人:* Richard Beare <richard.beare at gmail.com> <richard.beare at gmail.com>
>> *发送时间:* 2017年5月19日 11:12:30
>> *收件人:* Zou Jing
>> *抄送:* Francois Budin; insight-users at itk.org
>> *主题:* Re: [ITK-users] 答复: watershed
>>
>> You will need to enable "review" to get morphological watershed in 4.11
>>
>> On Fri, May 19, 2017 at 12:10 PM, Zou Jing <zjinger at hotmail.com> wrote:
>>
>>> Hi, Francois
>>>
>>> Thank you very much.
>>>
>>> The  version of my ITK is 4.11.0. I checked the watershed module, but
>>> there is no such thing as itkMorphologicalWatershedFr
>>> omMarkersImageFilter.
>>>
>>> I just found itkIsolatedWatershedImageFilterTest.cxx, itkTobogganImageFilterTest.cxx
>>> and itkWatershedImageFilterTest.cxx in the test folder.
>>> ------------------------------
>>> *发件人:* Francois Budin <francois.budin at kitware.com>
>>> *发送时间:* 2017年5月18日 20:21:41
>>> *收件人:* Zou Jing
>>> *抄送:* insight-users at itk.org
>>> *主题:* Re: [ITK-users] watershed
>>>
>>> Hello Zou Jing,
>>>
>>> The itkMorphologicalWatershedFromMarkersImageFilter was recently moved
>>> from the review module to the watershed module. If you are using a recent
>>> version of ITK (4.12rc01, 4.12rc02), the filter you are looking for will be
>>> in the watershed module. Otherwise it should be in the review module.
>>>
>>> Hope this helps,
>>> Francois
>>>
>>> On Thu, May 18, 2017 at 4:19 AM, Zou Jing <zjinger at hotmail.com> wrote:
>>>
>>>> Dear all
>>>>     I want to segment CTA images using watershed algorithm, The result
>>>> of WatershedSegmentation2.cxx was not ideal. I find that someone
>>>> use itkMorphologicalWatershedFromMarkersImageFilter, but I cannot find
>>>> that.
>>>>     Could anyone help me?
>>>>     Thanks.
>>>>
>>>>
>>>>
>>>> _____________________________________
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>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects athttp://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:http://www.itk.org/Wiki/ITK_FAQ
>>
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>>
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.php
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
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>
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