#include <itkHistogram.h>
Inheritance diagram for itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >:
Histogram represents an ND histogram. Histogram bins can be regularly or irregularly spaced. The storage for the histogram is managed via the FrequencyContainer specified by the template argument. The default frequency container is a DenseFrequencyContainer. A SparseFrequencyContainer can be used as an alternative.
Frequencies of a bin (SetFrequency(), IncreaseFrequency()) can be specified by measurement, index, or instance identifier.
Measurements can be queried by bin index or instance identifier. In this case, the measurement returned in the centroid of the histogram bin.
The Initialize() method is used to specified the number of bins for each dimension of the histogram. An overloaded version also allows for regularly spaced bins to defined. To define irregularly sized bins, use the SetBinMin()/SetBinMax() methods.
If you do not know the length of the measurement vector at compile time, you can set the second template parameter to 0. This can conveniently be obtained from MeasurementVectorTraits. For instance, instantiate a histogram as below:
typedef Histogram< THistogramMeasurement, typename MeasurementVectorTraits< MeasurementVectorType >::MeasurementVectorLength, TFrequencyContainer > HistogramType;
Definition at line 82 of file itkHistogram.h.
Public Types | |
typedef std::vector< BinMaxVectorType > | BinMaxContainerType |
typedef std::vector< MeasurementType > | BinMaxVectorType |
typedef std::vector< BinMinVectorType > | BinMinContainerType |
typedef std::vector< MeasurementType > | BinMinVectorType |
typedef SmartPointer< const Self > | ConstPointer |
typedef FrequencyContainerType::Pointer | FrequencyContainerPointer |
typedef TFrequencyContainer | FrequencyContainerType |
typedef FrequencyContainerType::FrequencyType | FrequencyType |
typedef itk::Index< VMeasurementVectorSize > | IndexType |
typedef IndexType::IndexValueType | IndexValueType |
typedef Superclass::InstanceIdentifier | InstanceIdentifier |
typedef TMeasurement | MeasurementType |
typedef Superclass::MeasurementVectorSizeType | MeasurementVectorSizeType |
typedef Superclass::MeasurementVectorType | MeasurementVectorType |
typedef SmartPointer< Self > | Pointer |
typedef Histogram | Self |
typedef itk::Size< VMeasurementVectorSize > | SizeType |
typedef SizeType::SizeValueType | SizeValueType |
typedef Sample< FixedArray< TMeasurement, VMeasurementVectorSize > > | Superclass |
typedef FrequencyContainerType::TotalFrequencyType | TotalFrequencyType |
typedef MeasurementVectorType | ValueType |
Public Member Functions | |
ConstIterator | Begin () const |
Iterator | Begin () |
virtual LightObject::Pointer | CreateAnother () const |
virtual void | DebugOff () const |
virtual void | DebugOn () const |
virtual void | Delete () |
ConstIterator | End () const |
Iterator | End () |
const MeasurementType & | GetBinMax (const unsigned int dimension, const unsigned long nbin) const |
const MeasurementType & | GetBinMaxFromValue (const unsigned int dimension, const float value) const |
const MeasurementType & | GetBinMin (const unsigned int dimension, const unsigned long nbin) const |
const MeasurementType & | GetBinMinFromValue (const unsigned int dimension, const float value) const |
virtual bool | GetClipBinsAtEnds () |
Command * | GetCommand (unsigned long tag) |
bool | GetDebug () const |
const BinMaxVectorType & | GetDimensionMaxs (const unsigned int dimension) const |
const BinMinVectorType & | GetDimensionMins (const unsigned int dimension) const |
virtual FrequencyType | GetFrequency (const InstanceIdentifier &id) const=0 |
FrequencyType | GetFrequency (const unsigned long n, const unsigned int dimension) const |
FrequencyType | GetFrequency (const IndexType &index) const |
FrequencyType | GetFrequency (const InstanceIdentifier &id) const |
MeasurementVectorType & | GetHistogramMaxFromIndex (const IndexType &index) |
MeasurementVectorType & | GetHistogramMinFromIndex (const IndexType &index) |
const IndexType & | GetIndex (const InstanceIdentifier &id) const |
bool | GetIndex (const MeasurementVectorType &measurement, IndexType &index) const |
const IndexType & | GetIndex (const MeasurementVectorType &measurement) const |
InstanceIdentifier | GetInstanceIdentifier (const IndexType &index) const |
const BinMaxContainerType & | GetMaxs () const |
MeasurementType | GetMeasurement (const unsigned long n, const unsigned int dimension) const |
virtual const MeasurementVectorType & | GetMeasurementVector (const InstanceIdentifier &id) const=0 |
const MeasurementVectorType & | GetMeasurementVector (const IndexType &index) const |
const MeasurementVectorType & | GetMeasurementVector (const InstanceIdentifier &id) const |
MeasurementVectorSizeType | GetMeasurementVectorSize () const |
const MetaDataDictionary & | GetMetaDataDictionary (void) const |
MetaDataDictionary & | GetMetaDataDictionary (void) |
const BinMinContainerType & | GetMins () const |
virtual unsigned long | GetMTime () const |
virtual const char * | GetNameOfClass () const |
virtual int | GetReferenceCount () const |
SizeValueType | GetSize (const unsigned int dimension) const |
SizeType | GetSize () const |
TotalFrequencyType | GetTotalFrequency () const |
bool | HasObserver (const EventObject &event) const |
bool | IncreaseFrequency (const MeasurementVectorType &measurement, const FrequencyType value) |
bool | IncreaseFrequency (const IndexType &index, const FrequencyType value) |
bool | IncreaseFrequency (const InstanceIdentifier &id, const FrequencyType value) |
void | Initialize (const SizeType &size, MeasurementVectorType &lowerBound, MeasurementVectorType &upperBound) |
void | Initialize (const SizeType &size) |
void | InvokeEvent (const EventObject &) const |
void | InvokeEvent (const EventObject &) |
bool | IsIndexOutOfBounds (const IndexType &index) const |
itkStaticConstMacro (MeasurementVectorSize, unsigned int, VMeasurementVectorSize) | |
virtual void | Modified () const |
void | Print (std::ostream &os, Indent indent=0) const |
virtual void | Register () const |
void | RemoveAllObservers () |
void | RemoveObserver (unsigned long tag) |
void | SetBinMax (const unsigned int dimension, unsigned long nbin, const MeasurementType max) |
void | SetBinMin (const unsigned int dimension, const unsigned long nbin, const MeasurementType min) |
virtual void | SetClipBinsAtEnds (bool _arg) |
void | SetDebug (bool debugFlag) const |
bool | SetFrequency (const MeasurementVectorType &measurement, const FrequencyType value) |
bool | SetFrequency (const IndexType &index, const FrequencyType value) |
bool | SetFrequency (const InstanceIdentifier &id, const FrequencyType value) |
void | SetFrequency (const FrequencyType value) |
virtual void | SetMeasurementVectorSize (const MeasurementVectorSizeType s) |
void | SetMetaDataDictionary (const MetaDataDictionary &rhs) |
virtual void | SetReferenceCount (int) |
void | SetToZero () |
unsigned int | Size () const |
virtual void | UnRegister () const |
unsigned long | AddObserver (const EventObject &event, Command *) const |
unsigned long | AddObserver (const EventObject &event, Command *) |
double | Quantile (const unsigned int dimension, const double &p) const |
virtual void | SetMeasurementVectorSize (const MeasurementVectorSizeType s) |
Static Public Member Functions | |
static void | BreakOnError () |
static Pointer | New () |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static void | SetGlobalWarningDisplay (bool flag) |
Protected Types | |
typedef int | InternalReferenceCountType |
Protected Member Functions | |
Histogram () | |
bool | PrintObservers (std::ostream &os, Indent indent) const |
void | PrintSelf (std::ostream &os, Indent indent) const |
virtual | ~Histogram () |
virtual void | PrintHeader (std::ostream &os, Indent indent) const |
virtual void | PrintTrailer (std::ostream &os, Indent indent) const |
Protected Attributes | |
InternalReferenceCountType | m_ReferenceCount |
SimpleFastMutexLock | m_ReferenceCountLock |
SizeType | m_Size |
Classes | |
class | ConstIterator |
class | Iterator |
typedef std::vector< BinMaxVectorType > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::BinMaxContainerType |
Definition at line 134 of file itkHistogram.h.
typedef std::vector< MeasurementType > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::BinMaxVectorType |
Definition at line 132 of file itkHistogram.h.
typedef std::vector< BinMinVectorType > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::BinMinContainerType |
Definition at line 133 of file itkHistogram.h.
typedef std::vector< MeasurementType > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::BinMinVectorType |
bin min max value storage types
Definition at line 131 of file itkHistogram.h.
typedef SmartPointer<const Self> itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::ConstPointer |
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 92 of file itkHistogram.h.
typedef FrequencyContainerType::Pointer itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::FrequencyContainerPointer |
Definition at line 116 of file itkHistogram.h.
typedef TFrequencyContainer itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::FrequencyContainerType |
frequency container typedef
Definition at line 115 of file itkHistogram.h.
typedef FrequencyContainerType::FrequencyType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::FrequencyType |
Frequency and TotalFrequency value type from superclass
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 119 of file itkHistogram.h.
typedef itk::Index< VMeasurementVectorSize > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::IndexType |
Index typedef support. An index is used to access pixel values.
Definition at line 123 of file itkHistogram.h.
typedef IndexType::IndexValueType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::IndexValueType |
Definition at line 124 of file itkHistogram.h.
typedef Superclass::InstanceIdentifier itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::InstanceIdentifier |
InstanceIdentifier typedef. This identifier is a unique sequential id for each measurement vector in a Sample subclass.
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 110 of file itkHistogram.h.
typedef int itk::LightObject::InternalReferenceCountType [protected, inherited] |
Define the type of the reference count according to the target. This allows the use of atomic operations
Definition at line 139 of file itkLightObject.h.
typedef TMeasurement itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::MeasurementType |
type of an element of a measurement vector
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 106 of file itkHistogram.h.
typedef Superclass::MeasurementVectorSizeType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::MeasurementVectorSizeType |
Typedef for the length of each measurement vector
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 112 of file itkHistogram.h.
typedef Superclass::MeasurementVectorType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::MeasurementVectorType |
Common sample class typedefs
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 109 of file itkHistogram.h.
typedef SmartPointer<Self> itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Pointer |
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 91 of file itkHistogram.h.
typedef Histogram itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Self |
Standard typedefs
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 89 of file itkHistogram.h.
typedef itk::Size< VMeasurementVectorSize > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SizeType |
size array type
Definition at line 127 of file itkHistogram.h.
typedef SizeType::SizeValueType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SizeValueType |
Definition at line 128 of file itkHistogram.h.
typedef Sample< FixedArray< TMeasurement, VMeasurementVectorSize > > itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Superclass |
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 90 of file itkHistogram.h.
typedef FrequencyContainerType::TotalFrequencyType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::TotalFrequencyType |
Total frequency type
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 120 of file itkHistogram.h.
typedef MeasurementVectorType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::ValueType |
Definition at line 111 of file itkHistogram.h.
itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Histogram | ( | ) | [protected] |
virtual itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::~Histogram | ( | ) | [inline, protected, virtual] |
Definition at line 514 of file itkHistogram.h.
unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
Command * | ||||
) | const [inherited] |
unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
Command * | ||||
) | [inherited] |
Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
ConstIterator itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Begin | ( | void | ) | const [inline] |
Definition at line 486 of file itkHistogram.h.
Iterator itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Begin | ( | void | ) | [inline] |
Definition at line 475 of file itkHistogram.h.
static void itk::LightObject::BreakOnError | ( | ) | [static, inherited] |
This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
virtual LightObject::Pointer itk::Object::CreateAnother | ( | ) | const [virtual, inherited] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
virtual void itk::Object::DebugOff | ( | ) | const [virtual, inherited] |
Turn debugging output off.
virtual void itk::Object::DebugOn | ( | ) | const [virtual, inherited] |
Turn debugging output on.
virtual void itk::LightObject::Delete | ( | ) | [virtual, inherited] |
Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
ConstIterator itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::End | ( | void | ) | const [inline] |
Definition at line 492 of file itkHistogram.h.
Iterator itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::End | ( | void | ) | [inline] |
Definition at line 481 of file itkHistogram.h.
const MeasurementType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetBinMax | ( | const unsigned int | dimension, | |
const unsigned long | nbin | |||
) | const [inline] |
Get the maximum value of nth bin of dimension d
Definition at line 203 of file itkHistogram.h.
const MeasurementType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetBinMaxFromValue | ( | const unsigned int | dimension, | |
const float | value | |||
) | const |
Get the maximum of the bin along dimension d corresponding to a particular measurement.
const MeasurementType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetBinMin | ( | const unsigned int | dimension, | |
const unsigned long | nbin | |||
) | const [inline] |
Get the minimum value of nth bin of dimension d
Definition at line 198 of file itkHistogram.h.
const MeasurementType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetBinMinFromValue | ( | const unsigned int | dimension, | |
const float | value | |||
) | const |
Get the minimum of the bin along dimension d corresponding to a particular measurement.
virtual bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetClipBinsAtEnds | ( | ) | [virtual] |
Is set to false if the bins at edges of the histogram extend to +/- infinity.
Command* itk::Object::GetCommand | ( | unsigned long | tag | ) | [inherited] |
Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.
bool itk::Object::GetDebug | ( | ) | const [inherited] |
Get the value of the debug flag.
const BinMaxVectorType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetDimensionMaxs | ( | const unsigned int | dimension | ) | const [inline] |
Get the vector of maximums along a dimension
Definition at line 232 of file itkHistogram.h.
const BinMinVectorType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetDimensionMins | ( | const unsigned int | dimension | ) | const [inline] |
Get the vector of bin minimums along a dimension
Definition at line 228 of file itkHistogram.h.
virtual FrequencyType itk::Statistics::Sample< TMeasurementVector >::GetFrequency | ( | const InstanceIdentifier & | id | ) | const [pure virtual, inherited] |
Get the frequency of a measurement specified by instance identifier.
FrequencyType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetFrequency | ( | const unsigned long | n, | |
const unsigned int | dimension | |||
) | const |
Get the frequency of a dimension's nth element.
FrequencyType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetFrequency | ( | const IndexType & | index | ) | const |
Get the frequency of an index
FrequencyType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetFrequency | ( | const InstanceIdentifier & | id | ) | const [inline] |
Get the frequency of an instance indentifier
Definition at line 259 of file itkHistogram.h.
static bool itk::Object::GetGlobalWarningDisplay | ( | ) | [static, inherited] |
MeasurementVectorType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetHistogramMaxFromIndex | ( | const IndexType & | index | ) |
Get the maximums of the bin corresponding to a particular index
MeasurementVectorType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetHistogramMinFromIndex | ( | const IndexType & | index | ) |
Get the minimums of the bin corresponding to a particular index
const IndexType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetIndex | ( | const InstanceIdentifier & | id | ) | const |
Get the index that is uniquely labelled by an instance identifier The corresponding id is the offset of the index This method uses ImageBase::ComputeIndex() method
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetIndex | ( | const MeasurementVectorType & | measurement, | |
IndexType & | index | |||
) | const |
Get the index of histogram corresponding to the specified measurement value. Returns true if index is valid and false if the measurement is outside the histogram
const IndexType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetIndex | ( | const MeasurementVectorType & | measurement | ) | const |
Get the index of a measurement value from the histogram.
InstanceIdentifier itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetInstanceIdentifier | ( | const IndexType & | index | ) | const |
Get the instance identifier of the bin that is indexed by the index. The corresponding instance identifier is the offset of the index This method uses ImageBase::ComputeIndex() method
const BinMaxContainerType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetMaxs | ( | ) | const [inline] |
Method the maximums of the bins
Definition at line 240 of file itkHistogram.h.
MeasurementType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetMeasurement | ( | const unsigned long | n, | |
const unsigned int | dimension | |||
) | const |
Get the measurement a bin along a specified dimension. This is the midpoint of the bin along that dimension.
virtual const MeasurementVectorType& itk::Statistics::Sample< TMeasurementVector >::GetMeasurementVector | ( | const InstanceIdentifier & | id | ) | const [pure virtual, inherited] |
Get the measurement associated with a particular InstanceIdentifier.
const MeasurementVectorType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetMeasurementVector | ( | const IndexType & | index | ) | const |
Get the measurement of an index. This is the centroid of the bin.
const MeasurementVectorType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetMeasurementVector | ( | const InstanceIdentifier & | id | ) | const |
Get the measurement of an instance identifier. This is the centroid of the bin.
MeasurementVectorSizeType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetMeasurementVectorSize | ( | ) | const [inline, virtual] |
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
Definition at line 506 of file itkHistogram.h.
const MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | const [inherited] |
MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | [inherited] |
const BinMinContainerType& itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetMins | ( | ) | const [inline] |
Get the minimums of the bins
Definition at line 236 of file itkHistogram.h.
virtual unsigned long itk::Object::GetMTime | ( | ) | const [virtual, inherited] |
Return this objects modified time.
Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.
Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().
virtual const char* itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
virtual int itk::LightObject::GetReferenceCount | ( | ) | const [inline, virtual, inherited] |
Gets the reference count on this object.
Definition at line 106 of file itkLightObject.h.
SizeValueType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetSize | ( | const unsigned int | dimension | ) | const [inline] |
Get the size of histogram along a specified dimension
Definition at line 192 of file itkHistogram.h.
SizeType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetSize | ( | void | ) | const [inline] |
Get the size (N-dimensional) of the histogram
Definition at line 188 of file itkHistogram.h.
TotalFrequencyType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::GetTotalFrequency | ( | ) | const [virtual] |
Get the total frequency in the histogram
Implements itk::Statistics::Sample< TMeasurementVector >.
static void itk::Object::GlobalWarningDisplayOff | ( | ) | [inline, static, inherited] |
static void itk::Object::GlobalWarningDisplayOn | ( | ) | [inline, static, inherited] |
bool itk::Object::HasObserver | ( | const EventObject & | event | ) | const [inherited] |
Return true if an observer is registered for this event.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::IncreaseFrequency | ( | const MeasurementVectorType & | measurement, | |
const FrequencyType | value | |||
) |
Increase the frequency of a measurement. Frequency is increased by the specified value. Returns false if the measurement is outside the bounds of the histogram.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::IncreaseFrequency | ( | const IndexType & | index, | |
const FrequencyType | value | |||
) |
Increase the frequency of an index. Frequency is increased by the specified value. Returns false if the bin is out of bounds.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::IncreaseFrequency | ( | const InstanceIdentifier & | id, | |
const FrequencyType | value | |||
) | [inline] |
Increase the frequency of an instance identifier. Frequency is increased by the specified value. Returns false if the bin is out of bounds.
Definition at line 287 of file itkHistogram.h.
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Initialize | ( | const SizeType & | size, | |
MeasurementVectorType & | lowerBound, | |||
MeasurementVectorType & | upperBound | |||
) |
Initialize the histogram using equal size bins. To assign bin's min and max values along each dimension use SetBinMin() and SetBinMax() functions.
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Initialize | ( | const SizeType & | size | ) |
Initialize the histogram, generating the offset table and preparing the frequency container. Subclasses should call this method in their Initialize() method.
void itk::Object::InvokeEvent | ( | const EventObject & | ) | const [inherited] |
Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.
void itk::Object::InvokeEvent | ( | const EventObject & | ) | [inherited] |
Call Execute on all the Commands observing this event id.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::IsIndexOutOfBounds | ( | const IndexType & | index | ) | const |
Returns true if the given index is out of bound meaning one of index is not between [0, last index]
itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::itkStaticConstMacro | ( | MeasurementVectorSize | , | |
unsigned | int, | |||
VMeasurementVectorSize | ||||
) |
Dimension of a measurement vector
virtual void itk::Object::Modified | ( | ) | const [virtual, inherited] |
Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, itk::RankImageFilter< TInputImage, TInputImage, itk::FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.
Referenced by itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::HistogramAlgorithmBase< TInputHistogram >::SetInputHistogram(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().
static Pointer itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::New | ( | ) | [static] |
standard New() method support
Reimplemented from itk::Object.
void itk::LightObject::Print | ( | std::ostream & | os, | |
Indent | indent = 0 | |||
) | const [inherited] |
Cause the object to print itself out.
Referenced by itk::WeakPointer< itk::ProcessObject >::Print().
virtual void itk::LightObject::PrintHeader | ( | std::ostream & | os, | |
Indent | indent | |||
) | const [protected, virtual, inherited] |
bool itk::Object::PrintObservers | ( | std::ostream & | os, | |
Indent | indent | |||
) | const [protected, inherited] |
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::PrintSelf | ( | std::ostream & | os, | |
Indent | indent | |||
) | const [protected, virtual] |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::Statistics::Sample< TMeasurementVector >.
virtual void itk::LightObject::PrintTrailer | ( | std::ostream & | os, | |
Indent | indent | |||
) | const [protected, virtual, inherited] |
double itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Quantile | ( | const unsigned int | dimension, | |
const double & | p | |||
) | const |
Get the pth percentile value for a dimension.
Let assume n = the index of the bin where the p-th percentile value is, min = min value of the dimension of the bin, max = max value of the dimension of the bin, interval = max - min , pp = cumlated proportion until n-1 bin ; and pb = frequency of the bin / total frequency of the dimension.
If p is less than 0.5, the percentile value = min + ((p - pp ) / pb) * interval If p is greater than or equal to 0.5 the percentile value = max - ((pp - p) / pb) * interval
virtual void itk::Object::Register | ( | ) | const [virtual, inherited] |
Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.
void itk::Object::RemoveAllObservers | ( | ) | [inherited] |
Remove all observers .
void itk::Object::RemoveObserver | ( | unsigned long | tag | ) | [inherited] |
Remove the observer with this tag value.
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetBinMax | ( | const unsigned int | dimension, | |
unsigned long | nbin, | |||
const MeasurementType | max | |||
) | [inline] |
Set the maximum value of nth bin of dimension d
Definition at line 213 of file itkHistogram.h.
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetBinMin | ( | const unsigned int | dimension, | |
const unsigned long | nbin, | |||
const MeasurementType | min | |||
) | [inline] |
Set the minimum value of nth bin of dimension d
Definition at line 208 of file itkHistogram.h.
virtual void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetClipBinsAtEnds | ( | bool | _arg | ) | [virtual] |
Set to false to have the bins at edges of the histogram extend to +/- infinity.
void itk::Object::SetDebug | ( | bool | debugFlag | ) | const [inherited] |
Set the value of the debug flag. A non-zero value turns debugging on.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetFrequency | ( | const MeasurementVectorType & | measurement, | |
const FrequencyType | value | |||
) |
Set the frequency of a measurement. Returns false if the bin is out of bounds.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetFrequency | ( | const IndexType & | index, | |
const FrequencyType | value | |||
) |
Set the frequency of an index. Returns false if the bin is out of bounds.
bool itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetFrequency | ( | const InstanceIdentifier & | id, | |
const FrequencyType | value | |||
) | [inline] |
Set the frequency of an instance identifier. Returns false if the bin is out of bounds.
Definition at line 270 of file itkHistogram.h.
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetFrequency | ( | const FrequencyType | value | ) |
Set all the bins in the histogram to a specified frequency
static void itk::Object::SetGlobalWarningDisplay | ( | bool | flag | ) | [static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().
virtual void itk::Statistics::Sample< TMeasurementVector >::SetMeasurementVectorSize | ( | const MeasurementVectorSizeType | s | ) | [inline, virtual, inherited] |
Set/Get macros for the length of the measurement vector
Definition at line 113 of file itkSample.h.
virtual void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetMeasurementVectorSize | ( | const MeasurementVectorSizeType | s | ) | [inline, virtual] |
void itk::Object::SetMetaDataDictionary | ( | const MetaDataDictionary & | rhs | ) | [inherited] |
virtual void itk::Object::SetReferenceCount | ( | int | ) | [virtual, inherited] |
Sets the reference count (use with care)
Reimplemented from itk::LightObject.
void itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::SetToZero | ( | ) |
Initialize the values of the histogram bins to zero
unsigned int itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::Size | ( | ) | const [virtual] |
Returns the number of instances (bins or cells) in this container
Implements itk::Statistics::Sample< TMeasurementVector >.
virtual void itk::Object::UnRegister | ( | ) | const [virtual, inherited] |
Decrease the reference count (release by another object).
Reimplemented from itk::LightObject.
InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited] |
Number of uses of this object by other objects.
Definition at line 144 of file itkLightObject.h.
SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited] |
Mutex lock to protect modification to the reference count
Definition at line 147 of file itkLightObject.h.
SizeType itk::Statistics::Histogram< TMeasurement, VMeasurementVectorSize, TFrequencyContainer >::m_Size [protected] |
Definition at line 517 of file itkHistogram.h.