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itk::bio::Genome Class Reference

#include <itkBioGenome.h>

List of all members.

Detailed Description

This class implement the abstraction of a biological genome.

The genome is considered to be a sequence of genes each one having a name and a level of expression. This class is intended to be used by artificial cells implementing cellular algorithms for image processing.

Definition at line 43 of file itkBioGenome.h.

Public Types

typedef std::string GeneIdType
typedef std::map< GeneIdType,
double > 

Public Member Functions

void Copy (const Genome &genome)
 Genome ()
double GetExpressionLevel (const GeneIdType &geneId)
void InsertGene (const GeneIdType &geneId)
void KnockOutGene (const GeneIdType &geneId)
void SetExpressionLevel (const GeneIdType &geneId, double level)
virtual ~Genome ()

Static Public Member Functions

static double Sigmoide (double threshold, double slant, double value)

Member Typedef Documentation

typedef std::string itk::bio::Genome::GeneIdType

Definition at line 46 of file itkBioGenome.h.

typedef std::map< GeneIdType, double > itk::bio::Genome::MapType

Definition at line 47 of file itkBioGenome.h.

Constructor & Destructor Documentation

itk::bio::Genome::Genome (  ) 

virtual itk::bio::Genome::~Genome (  )  [virtual]

Member Function Documentation

void itk::bio::Genome::Copy ( const Genome genome  ) 

double itk::bio::Genome::GetExpressionLevel ( const GeneIdType geneId  ) 

void itk::bio::Genome::InsertGene ( const GeneIdType geneId  ) 

void itk::bio::Genome::KnockOutGene ( const GeneIdType geneId  ) 

void itk::bio::Genome::SetExpressionLevel ( const GeneIdType geneId,
double  level 

static double itk::bio::Genome::Sigmoide ( double  threshold,
double  slant,
double  value 
) [inline, static]

This method computes a normalized Sigmoide function that can be used for gene network computations.

Definition at line 63 of file itkBioGenome.h.

The documentation for this class was generated from the following file:
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