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itk::ActiveShapeModelCalculator< TImage > Class Template Reference
[Operators]

#include <itkActiveShapeModelCalculator.h>

Inheritance diagram for itk::ActiveShapeModelCalculator< TImage >:

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Collaboration diagram for itk::ActiveShapeModelCalculator< TImage >:

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List of all members.


Detailed Description

template<class TImage>
class itk::ActiveShapeModelCalculator< TImage >

Base class for ActiveShapeModelCalculator object.

itkActiveShapeModelCalculator performs a principal component analysis (PCA) on a set of binary tranining images. The input is a binary volume that contains the shapes. The number of largest principal components which explain 98% of shape variance is automatically computed. The ITK pipeline mechanism sets up the storage for input images. The outputs are the mean shape, eigenvectors and eigenvalues. The user specifies the tolerance value (in pixel unit) for automatic landmark identification. The algorithm uses the VNL library to perform the eigen analysis.

The Update() function enables the calculation of the various models, creates the membership function objects and populates them.

REFERENCES
[1] Cootes T., Taylor C., et. al, Active Shape Models - Their training and application, Comput. Vis. Image Understanding, vol. 61, pp. 38-59, 1995.
[2] D. H. Douglas and T. K. Peucker, Algorithms for the reduction of the number of points required to represent a digitized line or its caricature, Canadian Cartographer 10(2), pp. 112--122, 1973.

Definition at line 77 of file itkActiveShapeModelCalculator.h.


Public Types

typedef
BinaryThresholdImageFilter
< Image3DType, Image3DType
BinaryFilterType
typedef
BinaryThresholdImageFilter
< Image2DType,
Image2D8bitsType
BinaryFilterType1
typedef
BinaryThresholdImageFilter
< Image3DType,
Image3D8bitsType
BinaryFilterType2
typedef
ImageRegionConstIterator
< Image3D8bitsType
ConstIteratorType
typedef SmartPointer< const SelfConstPointer
typedef
DanielssonDistanceMapImageFilter
< Image3DType, Image3DType
DistanceMapFilterType
typedef
GradientMagnitudeImageFilter
< Image3DType, Image3DType
GradientFilterType
typedef Image< Pixel8bitsType, 2 > Image2D8bitsType
typedef Image2DType::Pointer Image2DPointer
typedef Image< PixelType, 2 > Image2DType
typedef Image< Pixel8bitsType, 3 > Image3D8bitsType
typedef Image3DType::ConstPointer Image3DConstPointer
typedef TImage Image3DType
typedef Image3DType::IndexType Index3DType
typedef Image2D8bitsType::IndexType IndexType
typedef ImageRegionIterator
< Image2D8bitsType
IteratorType
typedef
ImageLinearIteratorWithIndex
< Image2DType
LinearIteratorType
typedef std::list< IndexTypeList2DType
typedef vnl_matrix< double > MatrixOfDoubleType
typedef vnl_matrix< int > MatrixOfIntegerType
typedef Vector< unsigned int, 2 > MeasurementVectorType
typedef NeighborhoodIterator
< Image2D8bitsType
NeighborIteratorType
typedef unsigned char Pixel8bitsType
typedef float PixelType
typedef
PointSetType::PointDataContainer 
PointDataContainer
typedef SmartPointer< SelfPointer
typedef
PointSetType::PointsContainer 
PointsContainer
typedef PointSet< unsigned
short, 2 > 
PointSetType
typedef PointsContainer::Iterator PointsIterator
typedef PointSetType::PointType PointType
typedef
BinaryPruningImageFilter
< Image2D8bitsType,
Image2D8bitsType
PruneFilterType
typedef Statistics::ListSample
< MeasurementVectorType
SampleType
typedef
ActiveShapeModelCalculator
< TImage > 
Self
typedef
ImageSliceConstIteratorWithIndex
< Image3DType
SliceIteratorType
typedef Object Superclass
typedef
BinaryThinningImageFilter
< Image2D8bitsType,
Image2D8bitsType
ThinFilterType
typedef Vector< double, 2 > Vector2DType
typedef Vector< double, 3 > Vector3DType
typedef vnl_vector< double > VectorOfDoubleType
typedef std::vector< unsigned int > VectorType

Public Member Functions

virtual LightObject::Pointer CreateAnother () const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
void GenerateData ()
CommandGetCommand (unsigned long tag)
bool GetDebug () const
VectorOfDoubleType GetEigenvalues ()
MatrixOfDoubleType GetEigenvector ()
VectorOfDoubleType GetMeanShape ()
const MetaDataDictionaryGetMetaDataDictionary (void) const
MetaDataDictionaryGetMetaDataDictionary (void)
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
const unsigned int & GetNumberOfTrainingImages () const
virtual int GetReferenceCount () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &) const
void InvokeEvent (const EventObject &)
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void UnRegister () const
unsigned long AddObserver (const EventObject &event, Command *) const
unsigned long AddObserver (const EventObject &event, Command *)
const double & GetLowerThresholdGradient () const
void SetLowerThresholdGradient (const double &lt)
const unsigned int & GetPruneIteration () const
void SetPruneIteration (const unsigned int &t)
const double & GetTolerance () const
void SetTolerance (const double &t)
const double & GetUpperThresholdDistance () const
void SetUpperThresholdDistance (const double &ut2)
const double & GetUpperThresholdMeanDistance () const
void SetUpperThresholdMeanDistance (const double &ut1)
virtual void SetImage (const Image3DType *image)

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOff ()
static void GlobalWarningDisplayOn ()
static void SetGlobalWarningDisplay (bool flag)

Protected Types

typedef int InternalReferenceCountType

Protected Member Functions

 ActiveShapeModelCalculator ()
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
 ~ActiveShapeModelCalculator ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Member Typedef Documentation

Definition at line 149 of file itkActiveShapeModelCalculator.h.

Definition at line 150 of file itkActiveShapeModelCalculator.h.

Definition at line 151 of file itkActiveShapeModelCalculator.h.

Definition at line 142 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef SmartPointer<const Self> itk::ActiveShapeModelCalculator< TImage >::ConstPointer

Reimplemented from itk::Object.

Definition at line 84 of file itkActiveShapeModelCalculator.h.

Definition at line 152 of file itkActiveShapeModelCalculator.h.

Standard filter type within this class.

Definition at line 148 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image< Pixel8bitsType, 2 > itk::ActiveShapeModelCalculator< TImage >::Image2D8bitsType

Definition at line 116 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image2DType::Pointer itk::ActiveShapeModelCalculator< TImage >::Image2DPointer

Standard image type pointer within this class.

Definition at line 124 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image< PixelType, 2 > itk::ActiveShapeModelCalculator< TImage >::Image2DType

Definition at line 115 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image< Pixel8bitsType, 3 > itk::ActiveShapeModelCalculator< TImage >::Image3D8bitsType

Definition at line 117 of file itkActiveShapeModelCalculator.h.

Definition at line 125 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef TImage itk::ActiveShapeModelCalculator< TImage >::Image3DType

Standard image type within this class.

Definition at line 114 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image3DType::IndexType itk::ActiveShapeModelCalculator< TImage >::Index3DType

Definition at line 121 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Image2D8bitsType::IndexType itk::ActiveShapeModelCalculator< TImage >::IndexType

Standard index type within this class.

Definition at line 120 of file itkActiveShapeModelCalculator.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

Definition at line 143 of file itkActiveShapeModelCalculator.h.

Standard iterator type within this class.

Definition at line 140 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef std::list<IndexType> itk::ActiveShapeModelCalculator< TImage >::List2DType

Standard list type within this class.

Definition at line 136 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef vnl_matrix<double> itk::ActiveShapeModelCalculator< TImage >::MatrixOfDoubleType

Standard matrix type within this class.

Definition at line 110 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef vnl_matrix<int> itk::ActiveShapeModelCalculator< TImage >::MatrixOfIntegerType

Definition at line 111 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Vector< unsigned int, 2 > itk::ActiveShapeModelCalculator< TImage >::MeasurementVectorType

Definition at line 103 of file itkActiveShapeModelCalculator.h.

Definition at line 144 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef unsigned char itk::ActiveShapeModelCalculator< TImage >::Pixel8bitsType

Definition at line 98 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef float itk::ActiveShapeModelCalculator< TImage >::PixelType

Extract the dimension of the image. itkStaticConstMacro(ImageDimension, unsigned int, TImage::ImageDimension); Standard pixel type within this class.

Definition at line 90 of file itkActiveShapeModelCalculator.h.

Definition at line 133 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef SmartPointer<Self> itk::ActiveShapeModelCalculator< TImage >::Pointer

Reimplemented from itk::Object.

Definition at line 83 of file itkActiveShapeModelCalculator.h.

Standard container type within this class.

Definition at line 132 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef PointSet< unsigned short, 2 > itk::ActiveShapeModelCalculator< TImage >::PointSetType

Standard PointSet type within this class.

Definition at line 128 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef PointsContainer::Iterator itk::ActiveShapeModelCalculator< TImage >::PointsIterator

Definition at line 145 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef PointSetType::PointType itk::ActiveShapeModelCalculator< TImage >::PointType

Definition at line 129 of file itkActiveShapeModelCalculator.h.

Definition at line 154 of file itkActiveShapeModelCalculator.h.

Definition at line 137 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef ActiveShapeModelCalculator<TImage> itk::ActiveShapeModelCalculator< TImage >::Self

Standard class typedefs.

Reimplemented from itk::Object.

Definition at line 81 of file itkActiveShapeModelCalculator.h.

Definition at line 141 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Object itk::ActiveShapeModelCalculator< TImage >::Superclass

Reimplemented from itk::Object.

Definition at line 82 of file itkActiveShapeModelCalculator.h.

Definition at line 153 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Vector< double, 2 > itk::ActiveShapeModelCalculator< TImage >::Vector2DType

Standard vector type within this class.

Definition at line 101 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef Vector< double, 3 > itk::ActiveShapeModelCalculator< TImage >::Vector3DType

Definition at line 102 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef vnl_vector<double> itk::ActiveShapeModelCalculator< TImage >::VectorOfDoubleType

Definition at line 105 of file itkActiveShapeModelCalculator.h.

template<class TImage>
typedef std::vector< unsigned int> itk::ActiveShapeModelCalculator< TImage >::VectorType

Definition at line 104 of file itkActiveShapeModelCalculator.h.


Constructor & Destructor Documentation

template<class TImage>
itk::ActiveShapeModelCalculator< TImage >::ActiveShapeModelCalculator (  )  [inline, protected]

Definition at line 231 of file itkActiveShapeModelCalculator.h.

References NULL.

template<class TImage>
itk::ActiveShapeModelCalculator< TImage >::~ActiveShapeModelCalculator (  )  [inline, protected]

Definition at line 246 of file itkActiveShapeModelCalculator.h.


Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject event,
Command  
) const [inherited]

unsigned long itk::Object::AddObserver ( const EventObject event,
Command  
) [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

static void itk::LightObject::BreakOnError (  )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual LightObject::Pointer itk::Object::CreateAnother (  )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

virtual void itk::Object::DebugOff (  )  const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn (  )  const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete (  )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::GenerateData (  ) 

Compute mean, eigenvectors and eigenvalues of a new or modified training set. This method computes the mean, eigenvectors and eigenvalues of the training set given as a parameter and stores them in the object. The values of these parameters can then be retrieved by using other methods of this object.

Command* itk::Object::GetCommand ( unsigned long  tag  )  [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug (  )  const [inherited]

Get the value of the debug flag.

template<class TImage>
VectorOfDoubleType itk::ActiveShapeModelCalculator< TImage >::GetEigenvalues (  ) 

Return the largest t eigenvalues [1 x t]

template<class TImage>
MatrixOfDoubleType itk::ActiveShapeModelCalculator< TImage >::GetEigenvector (  ) 

Return the matrix where each column corresponds to a eigenvector [2n x t]

static bool itk::Object::GetGlobalWarningDisplay (  )  [static, inherited]

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetLowerThresholdGradient (  )  const [inline]

Definition at line 173 of file itkActiveShapeModelCalculator.h.

template<class TImage>
VectorOfDoubleType itk::ActiveShapeModelCalculator< TImage >::GetMeanShape (  ) 

Return the mean Shape of the model (x1 y1 x2 y2 ... xn yn), where n = n. of landmarks

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  const [inherited]

Returns:
A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  [inherited]

Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.

virtual unsigned long itk::Object::GetMTime (  )  const [virtual, inherited]

Return this objects modified time.

Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

template<class TImage>
virtual const char* itk::ActiveShapeModelCalculator< TImage >::GetNameOfClass (  )  const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::Object.

template<class TImage>
const unsigned int& itk::ActiveShapeModelCalculator< TImage >::GetNumberOfTrainingImages (  )  const [inline]

Get the number of training images.

Definition at line 210 of file itkActiveShapeModelCalculator.h.

template<class TImage>
const unsigned int& itk::ActiveShapeModelCalculator< TImage >::GetPruneIteration (  )  const [inline]

Definition at line 205 of file itkActiveShapeModelCalculator.h.

virtual int itk::LightObject::GetReferenceCount (  )  const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetTolerance (  )  const [inline]

Definition at line 198 of file itkActiveShapeModelCalculator.h.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetUpperThresholdDistance (  )  const [inline]

Definition at line 191 of file itkActiveShapeModelCalculator.h.

template<class TImage>
const double& itk::ActiveShapeModelCalculator< TImage >::GetUpperThresholdMeanDistance (  )  const [inline]

Definition at line 182 of file itkActiveShapeModelCalculator.h.

static void itk::Object::GlobalWarningDisplayOff (  )  [inline, static, inherited]

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn (  )  [inline, static, inherited]

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject event  )  const [inherited]

Return true if an observer is registered for this event.

void itk::Object::InvokeEvent ( const EventObject  )  const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

void itk::Object::InvokeEvent ( const EventObject  )  [inherited]

Call Execute on all the Commands observing this event id.

virtual void itk::Object::Modified (  )  const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, itk::RankImageFilter< TInputImage, TInputImage, itk::FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

template<class TImage>
static Pointer itk::ActiveShapeModelCalculator< TImage >::New (  )  [static]

Method for creation through the object factory.

Reimplemented from itk::Object.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const [inherited]

virtual void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const [protected, inherited]

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [inline, protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

Definition at line 248 of file itkActiveShapeModelCalculator.h.

References itkDebugMacro, and HardConnectedComponentImageFilter::PrintSelf().

virtual void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

virtual void itk::Object::Register (  )  const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers (  )  [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long  tag  )  [inherited]

Remove the observer with this tag value.

void itk::Object::SetDebug ( bool  debugFlag  )  const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

static void itk::Object::SetGlobalWarningDisplay ( bool  flag  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TImage>
virtual void itk::ActiveShapeModelCalculator< TImage >::SetImage ( const Image3DType image  )  [inline, virtual]

Set the input binary image (values in {0,255}) .

Definition at line 157 of file itkActiveShapeModelCalculator.h.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetLowerThresholdGradient ( const double &  lt  )  [inline]

Set/Get the lower threshold for the binary filter applied on the gradient images. Changing this value from the default is not recommended or necessary but could be used to get thinner contours at the risk of creating an unstable solution.

Definition at line 171 of file itkActiveShapeModelCalculator.h.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary rhs  )  [inherited]

Returns:
Set the MetaDataDictionary

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetPruneIteration ( const unsigned int &  t  )  [inline]

Set/Get the number of iteration for Pruning filter

Definition at line 203 of file itkActiveShapeModelCalculator.h.

virtual void itk::Object::SetReferenceCount ( int   )  [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetTolerance ( const double &  t  )  [inline]

Set/Get the tolerance threshold (in pixels unit) for the automatic landmarks.

Definition at line 196 of file itkActiveShapeModelCalculator.h.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetUpperThresholdDistance ( const double &  ut2  )  [inline]

Set/Get the distance threshold for the binary filter applied on the distance images Changing this value from the default is not recommended or necessary but could be used to get thicker contours at the risk of creating an unstable solution.

Definition at line 189 of file itkActiveShapeModelCalculator.h.

template<class TImage>
void itk::ActiveShapeModelCalculator< TImage >::SetUpperThresholdMeanDistance ( const double &  ut1  )  [inline]

Set/Get the distance threshold for the binary filter applied on the mean of the distance images. Changing this value from the default is not recommended or necessary but could be used to get thicker contours at the risk of creating an unstable solution.

Definition at line 180 of file itkActiveShapeModelCalculator.h.

virtual void itk::Object::UnRegister (  )  const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

Referenced by itk::SmartPointer< itk::MutualInformationImageToImageMetric >::operator=().


Member Data Documentation

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.


The documentation for this class was generated from the following file:

Generated at Thu May 28 12:14:03 2009 for ITK by doxygen 1.5.5 written by Dimitri van Heesch, © 1997-2000