itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage > Class Template Reference
[Similarity Metrics of Registration Methods]
#include <itkKullbackLeiblerCompareHistogramImageToImageMetric.h>
Detailed Description
template<class TFixedImage, class TMovingImage>
class itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >
Computes the Kubler Lieblach(KL) metric between the histogram of the two images to be registered and a training histogram.
This class is templated over the type of the fixed and moving images to be compared.
This class computers the KL-metric by comparing the histograms of the testing histogram formed by the overlap of intensities in the images, to a training histogram. It is based on the following paper:
Albert C.S. Chung, William M. Wells III, Alexander Norbash, and W. Eric L. Grimson, Multi-modal Image Registration by Minimising Kullback-Leibler Distance, In Medical Image Computing and Computer-Assisted Intervention - MICCAI 2002, LNCS 2489, pp. 525 - 532.
The metric is given by KL(P_test||P_train) = Sum_{i1,i2} P_test(i1,i2) vcl_log(P_test(i1,i2)/P_train(i1,i2)) where P_test and P_train are probabilities given my normalized histograms, and i1 and i2 are the intensity bins in the histogram.
- PARAMETERS
- Epsilon is added to every bin in both histograms. This prevents division by zero problems. Epsilon should generally be set to a number smaller than one divided by the total number bins in the histogram. So, for a 256 by 256 histogram, Epsilon should be much less than 1e-5. Tests have shown that choices of epsilon are not very important as long as it is small enough. The default is 1e-12. I doubt you will need to change it.
- SUPPORT
- This work was supported by the Functional Imaging Research in Schizophrenia Testbed (FIRST) Biomedical Informatics Research Network (BIRN, http://www.nbirn.net), which is funded by the National Center for Research Resources at the National Institutes of Health (NIH). This work is also funded by the Neuroimage Analysis Center (P41 RR13218).
Definition at line 70 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
Member Typedef Documentation
typedef std::vector<bool> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BooleanArrayType [protected, inherited] |
Definition at line 442 of file itkOptImageToImageMetric.h.
typedef BSplineInterpolateImageFunction<MovingImageType, CoordinateRepresentationType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineInterpolatorType [protected, inherited] |
If a BSplineInterpolationFunction is used, this class obtain image derivatives from the BSpline interpolator. Otherwise, image derivatives are computed using central differencing.
Definition at line 453 of file itkOptImageToImageMetric.h.
typedef FixedArray< unsigned long, ::itk::GetImageDimension<FixedImageType>::ImageDimension > itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineParametersOffsetType [protected, inherited] |
Definition at line 445 of file itkOptImageToImageMetric.h.
typedef BSplineTransformType::ParameterIndexArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformIndexArrayType [protected, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 437 of file itkOptImageToImageMetric.h.
typedef Array2D<IndexValueType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformIndicesArrayType [protected, inherited] |
Definition at line 439 of file itkOptImageToImageMetric.h.
typedef BSplineDeformableTransform< CoordinateRepresentationType, ::itk::GetImageDimension<FixedImageType>::ImageDimension, itkGetStaticConstMacro(DeformationSplineOrder) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformType [protected, inherited] |
Definition at line 430 of file itkOptImageToImageMetric.h.
typedef Array2D<WeightsValueType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformWeightsArrayType [protected, inherited] |
Definition at line 434 of file itkOptImageToImageMetric.h.
typedef BSplineTransformType::WeightsType itk::ImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformWeightsType [protected, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 432 of file itkOptImageToImageMetric.h.
| typedef SmartPointer<const Self> itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 79 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef Superclass::ParametersValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType [inherited] |
Type used for representing point components
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 70 of file itkOptImageToImageMetric.h.
typedef Superclass::ParametersValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType [inherited] |
Type used for representing point components
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 70 of file itkImageToImageMetric.h.
typedef CentralDifferenceImageFunction<MovingImageType, CoordinateRepresentationType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::DerivativeFunctionType [protected, inherited] |
Typedefs for using central difference calculator.
Definition at line 458 of file itkOptImageToImageMetric.h.
| typedef Superclass::DerivativeType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType |
Type of the derivative.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 99 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::FixedImageConstPointer itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 102 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef Superclass::FixedImageConstPointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointerType [inherited] |
Definition at line 67 of file itkHistogramImageToImageMetric.h.
typedef std::vector<FixedImageIndexType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexContainer [inherited] |
Definition at line 114 of file itkOptImageToImageMetric.h.
typedef FixedImageType::IndexType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexType [inherited] |
Index and Point typedef support.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 108 of file itkOptImageToImageMetric.h.
typedef FixedImageIndexType::IndexValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageIndexValueType [inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 109 of file itkOptImageToImageMetric.h.
typedef FixedImageMaskType::ConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskConstPointer [inherited] |
Definition at line 146 of file itkOptImageToImageMetric.h.
typedef FixedImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer [inherited] |
Definition at line 145 of file itkOptImageToImageMetric.h.
typedef FixedImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskPointer [inherited] |
Definition at line 136 of file itkImageToImageMetric.h.
typedef SpatialObject< itkGetStaticConstMacro(FixedImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType [inherited] |
Type for the mask of the fixed image. Only pixels that are "inside" this mask will be considered for the computation of the metric
Definition at line 144 of file itkOptImageToImageMetric.h.
typedef SpatialObject< itkGetStaticConstMacro(FixedImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageMaskType [inherited] |
Type for the mask of the fixed image. Only pixels that are "inside" this mask will be considered for the computation of the metric
Definition at line 135 of file itkImageToImageMetric.h.
typedef Superclass::FixedImageType::PixelType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePixelType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 63 of file itkHistogramImageToImageMetric.h.
typedef TransformType::InputPointType itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImagePointType [inherited] |
typedef Superclass::FixedImageRegionType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 104 of file itkCompareHistogramImageToImageMetric.h.
typedef std::vector<FixedImageSamplePoint> itk::ImageToImageMetric< TFixedImage, TMovingImage >::FixedImageSampleContainer [protected, inherited] |
FixedImageSamplePoint typedef support.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 366 of file itkOptImageToImageMetric.h.
| typedef Superclass::FixedImageType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType |
Type of the fixed Image.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 100 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef GradientImageFilterType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer [inherited] |
Definition at line 134 of file itkOptImageToImageMetric.h.
typedef GradientImageFilterType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterPointer [inherited] |
Definition at line 125 of file itkImageToImageMetric.h.
typedef GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType [inherited] |
Definition at line 133 of file itkOptImageToImageMetric.h.
typedef GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType > itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageFilterType [inherited] |
Definition at line 124 of file itkImageToImageMetric.h.
typedef SmartPointer<GradientImageType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer [inherited] |
Definition at line 130 of file itkOptImageToImageMetric.h.
typedef SmartPointer<GradientImageType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImagePointer [inherited] |
Definition at line 121 of file itkImageToImageMetric.h.
typedef Image<GradientPixelType, itkGetStaticConstMacro(MovingImageDimension)> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType [inherited] |
Reimplemented in itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 129 of file itkOptImageToImageMetric.h.
typedef Image<GradientPixelType, itkGetStaticConstMacro(MovingImageDimension)> itk::ImageToImageMetric< TFixedImage, TMovingImage >::GradientImageType [inherited] |
Reimplemented in itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 120 of file itkImageToImageMetric.h.
| typedef Superclass::GradientPixelType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 96 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef HistogramType::FrequencyType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramAbsoluteFrequencyType [inherited] |
Definition at line 93 of file itkCompareHistogramImageToImageMetric.h.
| typedef Superclass::HistogramFrequencyType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramFrequencyType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 111 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::HistogramIteratorType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramIteratorType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 112 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::MeasurementVectorType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramMeasurementVectorType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 109 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef HistogramType::Pointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointer [inherited] |
Definition at line 82 of file itkHistogramImageToImageMetric.h.
| typedef Superclass::HistogramPointerType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointerType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 113 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::HistogramSizeType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramSizeType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 107 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::HistogramType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramType |
Typedefs for histogram. This should have been defined as Histogram<RealType,2> but a bug in VC++7 produced an internal compiler error with such declaration.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 106 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef CovariantVector< double, itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::ImageDerivativesType [protected, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 461 of file itkOptImageToImageMetric.h.
typedef BSplineTransformIndexArrayType::ValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::IndexValueType [protected, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 438 of file itkOptImageToImageMetric.h.
typedef Superclass::InputPointType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::InputPointType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 58 of file itkHistogramImageToImageMetric.h.
typedef int itk::LightObject::InternalReferenceCountType [protected, inherited] |
Define the type of the reference count according to the target. This allows the use of atomic operations
Definition at line 139 of file itkLightObject.h.
| typedef Superclass::InterpolatorPointer itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 115 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::InterpolatorType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType |
Type of the Interpolator Base class
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 114 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef HistogramType::MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasurementVectorType [inherited] |
Definition at line 80 of file itkHistogramImageToImageMetric.h.
| typedef Superclass::MeasureType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasureType |
Type of the measure.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 98 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::MovingImageConstPointer itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 104 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef Superclass::MovingImageConstPointer itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointerType [inherited] |
Definition at line 69 of file itkHistogramImageToImageMetric.h.
typedef MovingImageType::IndexType itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageIndexType [inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 110 of file itkOptImageToImageMetric.h.
typedef MovingImageMaskType::ConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskConstPointer [inherited] |
Definition at line 153 of file itkOptImageToImageMetric.h.
typedef MovingImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer [inherited] |
Definition at line 152 of file itkOptImageToImageMetric.h.
typedef MovingImageMaskType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskPointer [inherited] |
Definition at line 142 of file itkImageToImageMetric.h.
typedef SpatialObject< itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType [inherited] |
Type for the mask of the moving image. Only pixels that are "inside" this mask will be considered for the computation of the metric
Definition at line 151 of file itkOptImageToImageMetric.h.
typedef SpatialObject< itkGetStaticConstMacro(MovingImageDimension) > itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImageMaskType [inherited] |
Type for the mask of the moving image. Only pixels that are "inside" this mask will be considered for the computation of the metric
Definition at line 141 of file itkImageToImageMetric.h.
typedef Superclass::MovingImageType::PixelType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePixelType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 65 of file itkHistogramImageToImageMetric.h.
typedef std::vector<MovingImagePointType> itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointArrayType [protected, inherited] |
Definition at line 441 of file itkOptImageToImageMetric.h.
typedef TransformType::OutputPointType itk::ImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType [inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 112 of file itkOptImageToImageMetric.h.
| typedef Superclass::MovingImageType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType |
Type of the moving Image.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 101 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef MultiThreader itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreaderType [protected, inherited] |
Types and variables related to multi-threading
Definition at line 518 of file itkOptImageToImageMetric.h.
typedef Superclass::OutputPointType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::OutputPointType [inherited] |
Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 59 of file itkHistogramImageToImageMetric.h.
typedef Superclass::ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::ParametersType [inherited] |
Type of the parameters.
Reimplemented from itk::SingleValuedCostFunction.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 163 of file itkOptImageToImageMetric.h.
typedef Superclass::ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::ParametersType [inherited] |
Type of the parameters.
Reimplemented from itk::SingleValuedCostFunction.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 152 of file itkImageToImageMetric.h.
typedef double itk::CostFunction::ParametersValueType [inherited] |
ParametersType typedef. It defines a position in the optimization search space.
Definition at line 46 of file itkCostFunction.h.
| typedef SmartPointer<Self> itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 78 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::RealType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::RealType |
Types transferred from the base class
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 86 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef Array<double> itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ScalesType [inherited] |
The scales type.
Definition at line 126 of file itkHistogramImageToImageMetric.h.
| typedef KullbackLeiblerCompareHistogramImageToImageMetric itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Self |
Standard class typedefs.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 75 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef CompareHistogramImageToImageMetric<TFixedImage, TMovingImage> itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 77 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::ConstPointer itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformConstPointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 92 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::TransformJacobianType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 95 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::TransformParametersType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 94 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::TransformPointer itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer |
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 91 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| typedef Superclass::TransformType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformType |
Type of the Transform Base class
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 90 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
typedef BSplineTransformWeightsType::ValueType itk::ImageToImageMetric< TFixedImage, TMovingImage >::WeightsValueType [protected, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 433 of file itkOptImageToImageMetric.h.
Constructor & Destructor Documentation
| itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::KullbackLeiblerCompareHistogramImageToImageMetric | ( | ) | [protected] |
Constructor is protected to ensure that New() function is used to create instances.
| virtual itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::~KullbackLeiblerCompareHistogramImageToImageMetric | ( | ) | [inline, protected, virtual] |
Constructor is protected to ensure that New() function is used to create instances.
Definition at line 136 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
Member Function Documentation
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | const [inherited] |
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | [inherited] |
Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
| static void itk::LightObject::BreakOnError | ( | ) | [static, inherited] |
This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradient | ( | void | ) | [virtual, inherited] |
Computes the gradient image and assigns it to m_GradientImage
Reimplemented in itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradient | ( | ) | [virtual, inherited] |
Computes the gradient image and assigns it to m_GradientImage
Reimplemented in itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOff | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOff | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOn | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeGradientOn | ( | ) | [virtual, inherited] |
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeHistogram | ( | const TransformParametersType & | parameters, | |
| unsigned int | parameter, | |||
| double | step, | |||
| HistogramType & | histogram | |||
| ) | const [protected, inherited] |
Computes the joint histogram from the transformation parameters passed to the function.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::ComputeHistogram | ( | const TransformParametersType & | parameters, | |
| HistogramType & | histogram | |||
| ) | const [protected, inherited] |
Computes the joint histogram from the transformation parameters passed to the function.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ComputeImageDerivatives | ( | const MovingImagePointType & | mappedPoint, | |
| ImageDerivativesType & | gradient, | |||
| unsigned int | threadID | |||
| ) | const [protected, virtual, inherited] |
Compute image derivatives at a point.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::CopyHistogram | ( | HistogramType & | target, | |
| HistogramType & | source | |||
| ) | const [protected, inherited] |
Copies a histogram.
| virtual LightObject::Pointer itk::Object::CreateAnother | ( | ) | const [virtual, inherited] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
| virtual void itk::Object::DebugOff | ( | ) | const [virtual, inherited] |
Turn debugging output off.
| virtual void itk::Object::DebugOn | ( | ) | const [virtual, inherited] |
Turn debugging output on.
| virtual void itk::LightObject::Delete | ( | ) | [virtual, inherited] |
Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
| virtual MeasureType itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMeasure | ( | HistogramType & | histogram | ) | const [protected, virtual] |
Evaluates the mutual information from the histogram.
Implements itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| void itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FormTrainingHistogram | ( | ) | throw (ExceptionObject) [protected] |
Form the Histogram for the Training data
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| Command* itk::Object::GetCommand | ( | unsigned long | tag | ) | [inherited] |
Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.
| virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetComputeGradient | ( | ) | [virtual, inherited] |
| virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetComputeGradient | ( | ) | [virtual, inherited] |
| bool itk::Object::GetDebug | ( | ) | const [inherited] |
Get the value of the debug flag.
| virtual void itk::SingleValuedCostFunction::GetDerivative | ( | const ParametersType & | parameters, | |
| DerivativeType & | derivative | |||
| ) | const [pure virtual, inherited] |
This method returns the derivative of the cost function corresponding to the specified parameters.
Implemented in itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative | ( | const TransformParametersType & | parameters, | |
| DerivativeType & | derivative | |||
| ) | const [inherited] |
Get the derivatives of the match measure.
| virtual double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivativeStepLength | ( | ) | const [virtual, inherited] |
Returns the step length used to calculate the derivative.
| virtual const ScalesType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetDerivativeStepLengthScales | ( | ) | [virtual, inherited] |
Returns the derivate step length scales.
| virtual const double& itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetEpsilon | ( | ) | [virtual] |
Get epsilon, the histogram frequency to use if the frequency is 0
| virtual const FixedImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImage | ( | ) | [virtual, inherited] |
Get the Fixed Image.
| virtual const FixedImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImage | ( | ) | [virtual, inherited] |
Get the Fixed Image.
| virtual const FixedImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageMask | ( | ) | [virtual, inherited] |
| virtual const FixedImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageMask | ( | ) | [virtual, inherited] |
| virtual const FixedImageRegionType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageRegion | ( | ) | [virtual, inherited] |
Get the region over which the metric will be computed
| virtual const FixedImageRegionType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageRegion | ( | ) | [virtual, inherited] |
Get the region over which the metric will be computed
| virtual const FixedImagePixelType& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetFixedImageSamplesIntensityThreshold | ( | ) | [virtual, inherited] |
| static bool itk::Object::GetGlobalWarningDisplay | ( | ) | [static, inherited] |
| virtual const GradientImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetGradientImage | ( | ) | [virtual, inherited] |
Get Gradient Image.
| virtual const GradientImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetGradientImage | ( | ) | [virtual, inherited] |
Get Gradient Image.
| virtual const HistogramPointer& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetHistogram | ( | ) | [virtual, inherited] |
Return the joint histogram. This is updated during every call to the GetValue() method. The histogram can for instance be used by itk::HistogramToImageFilter to plot the joint histogram.
| virtual const HistogramSizeType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetHistogramSize | ( | ) | [virtual, inherited] |
Gets the histogram size.
| virtual const InterpolatorType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetInterpolator | ( | ) | [virtual, inherited] |
Get a pointer to the Interpolator.
| virtual const InterpolatorType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetInterpolator | ( | ) | [virtual, inherited] |
Get a pointer to the Interpolator.
| const MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | const [inherited] |
- Returns:
- A constant reference to this objects MetaDataDictionary.
| MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | [inherited] |
| virtual const MovingImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImage | ( | ) | [virtual, inherited] |
Get the Moving Image.
| virtual const MovingImageType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImage | ( | ) | [virtual, inherited] |
Get the Moving Image.
| virtual const MovingImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImageMask | ( | ) | [virtual, inherited] |
| virtual const MovingImageMaskType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetMovingImageMask | ( | ) | [virtual, inherited] |
| virtual unsigned long itk::Object::GetMTime | ( | ) | const [virtual, inherited] |
Return this objects modified time.
Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.
Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().
| virtual const char* itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfFixedImageSamples | ( | ) | [virtual, inherited] |
| virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfMovingImageSamples | ( | ) | [virtual, inherited] |
Get the number of pixels considered in the computation.
| unsigned int itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters | ( | void | ) | const [inline, virtual] |
Return the number of parameters required by the Transform
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 124 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
| virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfPixelsCounted | ( | ) | [virtual, inherited] |
Get the number of pixels considered in the computation.
| virtual const unsigned long& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfPixelsCounted | ( | ) | [virtual, inherited] |
Get the number of pixels considered in the computation.
| unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfPixelsCounter | ( | void | ) | [inline, inherited] |
Get the number of pixels considered in the computation.
Definition at line 191 of file itkOptImageToImageMetric.h.
| unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfSpatialSamples | ( | void | ) | [inline, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 274 of file itkOptImageToImageMetric.h.
| virtual const unsigned int& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfThreads | ( | ) | [virtual, inherited] |
Reimplemented in itk::MatchCardinalityImageToImageMetric< TFixedImage, TMovingImage >.
| virtual const FixedImagePixelType& itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetPaddingValue | ( | ) | [virtual, inherited] |
Returns the padding value.
| virtual int itk::LightObject::GetReferenceCount | ( | ) | const [inline, virtual, inherited] |
Gets the reference count on this object.
Definition at line 106 of file itkLightObject.h.
| virtual const FixedImageType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingFixedImage | ( | ) | [virtual, inherited] |
Get the Training Fixed Image.
| virtual const FixedImageRegionType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingFixedImageRegion | ( | ) | [virtual, inherited] |
Get the region over which the training histogram will be computed
| virtual const HistogramPointerType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingHistogram | ( | ) | [virtual, inherited] |
Get the histogram to be used in the metric calculation
| virtual InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingInterpolator | ( | ) | [virtual, inherited] |
Get a pointer to the Interpolator.
| virtual const MovingImageType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingMovingImage | ( | ) | [virtual, inherited] |
Get the Training Moving Image.
| virtual TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingTransform | ( | ) | [virtual, inherited] |
Get a pointer to the Transform.
| virtual const TransformType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetTransform | ( | ) | [virtual, inherited] |
Get a pointer to the Transform.
| virtual const TransformType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetTransform | ( | ) | [virtual, inherited] |
Get a pointer to the Transform.
| virtual double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUpperBoundIncreaseFactor | ( | ) | const [virtual, inherited] |
| virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseAllPixels | ( | ) | [virtual, inherited] |
| virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseCachingOfBSplineWeights | ( | ) | [virtual, inherited] |
| virtual const bool& itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetUseFixedImageSamplesIntensityThreshold | ( | ) | [virtual, inherited] |
| virtual bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetUsePaddingValue | ( | ) | const [virtual, inherited] |
| virtual MeasureType itk::SingleValuedCostFunction::GetValue | ( | const ParametersType & | parameters | ) | const [pure virtual, inherited] |
This method returns the value of the cost function corresponding to the specified parameters.
Implemented in itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >.
| MeasureType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValue | ( | const TransformParametersType & | parameters | ) | const [inherited] |
Get the value for single valued optimizers.
| virtual void itk::SingleValuedCostFunction::GetValueAndDerivative | ( | const ParametersType & | parameters, | |
| MeasureType & | value, | |||
| DerivativeType & | derivative | |||
| ) | const [inline, virtual, inherited] |
This method returns the value and derivative of the cost function corresponding to the specified parameters
Definition at line 71 of file itkSingleValuedCostFunction.h.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative | ( | const TransformParametersType & | parameters, | |
| MeasureType & | Value, | |||
| DerivativeType & | Derivative | |||
| ) | const [inherited] |
Get value and derivatives for multiple valued optimizers.
| static ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreaded | ( | void * | arg | ) | [static, protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedInitiate | ( | void | ) | const [protected, inherited] |
| static ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPostProcess | ( | void * | arg | ) | [static, protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPostProcessInitiate | ( | void | ) | const [protected, inherited] |
| static ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPreProcess | ( | void * | arg | ) | [static, protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeMultiThreadedPreProcessInitiate | ( | void | ) | const [protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThread | ( | unsigned int | threadID | ) | const [protected, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPostProcess | ( | unsigned int | , | |
| bool | ||||
| ) | const [inline, protected, virtual, inherited] |
Definition at line 594 of file itkOptImageToImageMetric.h.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPreProcess | ( | unsigned int | , | |
| bool | ||||
| ) | const [inline, protected, virtual, inherited] |
Definition at line 582 of file itkOptImageToImageMetric.h.
| virtual bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadProcessSample | ( | unsigned int | , | |
| unsigned long | , | |||
| const MovingImagePointType & | , | |||
| double | , | |||
| const ImageDerivativesType & | ||||
| ) | const [inline, protected, virtual, inherited] |
Definition at line 584 of file itkOptImageToImageMetric.h.
| static ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreaded | ( | void * | arg | ) | [static, protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedInitiate | ( | void | ) | const [protected, inherited] |
| static ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPostProcess | ( | void * | arg | ) | [static, protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPostProcessInitiate | ( | void | ) | const [protected, inherited] |
| static ITK_THREAD_RETURN_TYPE itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPreProcess | ( | void * | arg | ) | [static, protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueMultiThreadedPreProcessInitiate | ( | void | ) | const [protected, inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThread | ( | unsigned int | threadID | ) | const [protected, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPostProcess | ( | unsigned int | , | |
| bool | ||||
| ) | const [inline, protected, virtual, inherited] |
Definition at line 552 of file itkOptImageToImageMetric.h.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPreProcess | ( | unsigned int | threadID, | |
| bool | withinSampleThread | |||
| ) | const [inline, protected, virtual, inherited] |
| virtual bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadProcessSample | ( | unsigned int | , | |
| unsigned long | , | |||
| const MovingImagePointType & | , | |||
| double | ||||
| ) | const [inline, protected, virtual, inherited] |
Definition at line 546 of file itkOptImageToImageMetric.h.
| static void itk::Object::GlobalWarningDisplayOff | ( | ) | [inline, static, inherited] |
| static void itk::Object::GlobalWarningDisplayOn | ( | ) | [inline, static, inherited] |
| bool itk::Object::HasObserver | ( | const EventObject & | event | ) | const [inherited] |
Return true if an observer is registered for this event.
| void itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize | ( | ) | throw (ExceptionObject) [virtual] |
Forms the histogram of the training images to prepare to evaluate the metric. Must set all parameters first
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | const [inherited] |
Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | [inherited] |
Call Execute on all the Commands observing this event id.
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | DeformationSplineOrder | , | |
| unsigned | int, | |||
| 3 | ||||
| ) | [protected, inherited] |
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | FixedImageDimension | , | |
| unsigned | int, | |||
| TFixedImage::ImageDimension | ||||
| ) | [inherited] |
Reimplemented in itk::GradientDifferenceImageToImageMetric< TFixedImage, TMovingImage >.
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | MovingImageDimension | , | |
| unsigned | int, | |||
| TMovingImage::ImageDimension | ||||
| ) | [inherited] |
Constants for the image dimensions
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | FixedImageDimension | , | |
| unsigned | int, | |||
| TFixedImage::ImageDimension | ||||
| ) | [inherited] |
Reimplemented in itk::GradientDifferenceImageToImageMetric< TFixedImage, TMovingImage >.
| itk::ImageToImageMetric< TFixedImage, TMovingImage >::itkStaticConstMacro | ( | MovingImageDimension | , | |
| unsigned | int, | |||
| TMovingImage::ImageDimension | ||||
| ) | [inherited] |
Constants for the image dimensions
| virtual void itk::Object::Modified | ( | ) | const [virtual, inherited] |
Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, itk::RankImageFilter< TInputImage, TInputImage, itk::FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.
Referenced by itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::MultiThreadingInitialize | ( | void | ) | throw ( ExceptionObject ) [virtual, inherited] |
Initialize the components related to supporting multiple threads
| static Pointer itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::Object.
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::NumberOfFixedImageSamplesUpdated | ( | ) | [protected, inherited] |
Update sample sizes for the threads.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::PreComputeTransformValues | ( | void | ) | [protected, virtual, inherited] |
| void itk::LightObject::Print | ( | std::ostream & | os, | |
| Indent | indent = 0 | |||
| ) | const [inherited] |
Cause the object to print itself out.
Referenced by itk::WeakPointer< itk::ProcessObject >::Print(), and itk::SmartPointer< itk::MutualInformationImageToImageMetric >::Print().
| virtual void itk::LightObject::PrintHeader | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| bool itk::Object::PrintObservers | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, inherited] |
| void itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual] |
Constructor is protected to ensure that New() function is used to create instances.
Reimplemented from itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::LightObject::PrintTrailer | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| virtual void itk::Object::Register | ( | ) | const [virtual, inherited] |
Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ReinitializeSeed | ( | int | seed | ) | [inherited] |
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::ReinitializeSeed | ( | ) | [inherited] |
Reinitialize the seed of the random number generator that selects the sample of pixels used for estimating the image histograms and the joint histogram. By nature, this metric is not deterministic, since at each run it may select a different set of pixels. By initializing the random number generator seed to the same value you can restore determinism. On the other hand, calling the method ReinitializeSeed() without arguments will use the clock from your machine in order to have a very random initialization of the seed. This will indeed increase the non-deterministic behavior of the metric.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
| void itk::Object::RemoveAllObservers | ( | ) | [inherited] |
Remove all observers .
| void itk::Object::RemoveObserver | ( | unsigned long | tag | ) | [inherited] |
Remove the observer with this tag value.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SampleFixedImageDomain | ( | FixedImageSampleContainer & | samples | ) | const [protected, virtual, inherited] |
Uniformly select a sample set from the fixed image domain.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SampleFixedImageIndexes | ( | FixedImageSampleContainer & | samples | ) | [protected, virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SampleFullFixedImageDomain | ( | FixedImageSampleContainer & | samples | ) | [protected, virtual, inherited] |
Gather all the pixels from the fixed image domain.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetComputeGradient | ( | bool | _arg | ) | [virtual, inherited] |
Set/Get gradient computation.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetComputeGradient | ( | bool | _arg | ) | [virtual, inherited] |
Set/Get gradient computation.
| void itk::Object::SetDebug | ( | bool | debugFlag | ) | const [inherited] |
Set the value of the debug flag. A non-zero value turns debugging on.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetDerivativeStepLength | ( | double | _arg | ) | [virtual, inherited] |
Sets the step length used to calculate the derivative.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetDerivativeStepLengthScales | ( | ScalesType | _arg | ) | [virtual, inherited] |
Sets the derivative step length scales.
| virtual void itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetEpsilon | ( | double | _arg | ) | [virtual] |
Set epsilon, which is added to each bin in both Histogram
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImage | ( | const FixedImageType * | _arg | ) | [virtual, inherited] |
Connect the Fixed Image.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImage | ( | const FixedImageType * | _arg | ) | [virtual, inherited] |
Connect the Fixed Image.
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageIndexes | ( | const FixedImageIndexContainer & | indexes | ) | [inherited] |
Set the fixed image indexes to be used as the samples when computing the match metric
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask | ( | const FixedImageMaskType * | _arg | ) | [virtual, inherited] |
Set/Get the fixed image mask.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageMask | ( | FixedImageMaskType * | _arg | ) | [virtual, inherited] |
Set/Get the fixed image mask.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageRegion | ( | FixedImageRegionType | _arg | ) | [virtual, inherited] |
Set the region over which the metric will be computed
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageRegion | ( | FixedImageRegionType | _arg | ) | [virtual, inherited] |
Set the region over which the metric will be computed
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetFixedImageSamplesIntensityThreshold | ( | const FixedImagePixelType & | thresh | ) | [inherited] |
Minimum fixed-image intensity needed for a sample to be used in the metric computation
| static void itk::Object::SetGlobalWarningDisplay | ( | bool | flag | ) | [static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetHistogramSize | ( | HistogramSizeType | _arg | ) | [virtual, inherited] |
Sets the histogram size. Note this function must be called before Initialize().
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetInterpolator | ( | InterpolatorType * | _arg | ) | [virtual, inherited] |
Connect the Interpolator.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetInterpolator | ( | InterpolatorType * | _arg | ) | [virtual, inherited] |
Connect the Interpolator.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetLowerBound | ( | const MeasurementVectorType & | bound | ) | [inherited] |
Set the lower bounds of the intensities to be considered for computing the histogram. This option allows to focus the computation of the Metric in a particular range of intensities that correspond to features of interest.
| void itk::Object::SetMetaDataDictionary | ( | const MetaDataDictionary & | rhs | ) | [inherited] |
- Returns:
- Set the MetaDataDictionary
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImage | ( | const MovingImageType * | _arg | ) | [virtual, inherited] |
Connect the Moving Image.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImage | ( | const MovingImageType * | _arg | ) | [virtual, inherited] |
Connect the Moving Image.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask | ( | const MovingImageMaskType * | _arg | ) | [virtual, inherited] |
Set/Get the moving image mask.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetMovingImageMask | ( | MovingImageMaskType * | _arg | ) | [virtual, inherited] |
Set/Get the moving image mask.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfFixedImageSamples | ( | unsigned long | numSamples | ) | [inline, virtual, inherited] |
Number of spatial samples to used to compute metric
Definition at line 251 of file itkOptImageToImageMetric.h.
References itkDebugMacro.
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfSpatialSamples | ( | unsigned long | num | ) | [inline, inherited] |
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 270 of file itkOptImageToImageMetric.h.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfThreads | ( | unsigned int | _arg | ) | [virtual, inherited] |
Set/Get number of threads to use for computations.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetPaddingValue | ( | FixedImagePixelType | _arg | ) | [virtual, inherited] |
The padding value.
| virtual void itk::Object::SetReferenceCount | ( | int | ) | [virtual, inherited] |
Sets the reference count (use with care)
Reimplemented from itk::LightObject.
| virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImage | ( | const FixedImageType * | _arg | ) | [virtual, inherited] |
Set the Training Fixed Image.
| virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImageRegion | ( | FixedImageRegionType | _arg | ) | [virtual, inherited] |
Set the region over which the training histogram will be computed
| virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingHistogram | ( | HistogramPointerType | _arg | ) | [virtual, inherited] |
Set the histogram to be used in the metric calculation
| virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingInterpolator | ( | InterpolatorType * | _arg | ) | [virtual, inherited] |
Set the Interpolator.
| virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingMovingImage | ( | const MovingImageType * | _arg | ) | [virtual, inherited] |
Set the Training Moving Image.
| virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingTransform | ( | TransformType * | _arg | ) | [virtual, inherited] |
Set the Training Transform.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransform | ( | TransformType * | _arg | ) | [virtual, inherited] |
Connect the Transform.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTransform | ( | TransformType * | transform | ) | [inherited] |
Define the transform and thereby the parameter space of the metric and the space of its derivatives
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransformParameters | ( | const ParametersType & | parameters | ) | const [inherited] |
Set the parameters defining the Transform.
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetTransformParameters | ( | const ParametersType & | parameters | ) | const [inherited] |
Set the parameters defining the Transform.
| void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUpperBound | ( | const MeasurementVectorType & | bound | ) | [inherited] |
Set the upper bounds of the intensities to be considered for computing the histogram. This option allows to focus the computation of the Metric in a particular range of intensities that correspond to features of interest.
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUpperBoundIncreaseFactor | ( | double | _arg | ) | [virtual, inherited] |
Factor to increase the upper bound for the samples in the histogram. Default value is 0.001
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseAllPixels | ( | bool | _arg | ) | [virtual, inherited] |
Select whether the metric will be computed using all the pixels on the fixed image region, or only using a set of randomly selected pixels.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseCachingOfBSplineWeights | ( | bool | _arg | ) | [virtual, inherited] |
This boolean flag is only relevant when this metric is used along with a BSplineDeformableTransform. The flag enables/disables the caching of values computed when a physical point is mapped through the BSplineDeformableTransform. In particular it will cache the values of the BSpline weights for that points, and the indexes indicating what BSpline-grid nodes are relevant for that specific point. This caching is made optional due to the fact that the memory arrays used for the caching can reach large sizes even for moderate image size problems. For example, for a 3D image of 256^3, using 20% of pixels, these arrays will take about 1 Gigabyte of RAM for storage. The ratio of computing time between using the cache or not using the cache can reach 1:5, meaning that using the caching can provide a five times speed up. It is therefore, interesting to enable the caching, if enough memory is available for it. The caching is enabled by default, in order to preserve backward compatibility with previous versions of ITK.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SetUseFixedImageSamplesIntensityThreshold | ( | bool | _arg | ) | [virtual, inherited] |
| virtual void itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::SetUsePaddingValue | ( | bool | _arg | ) | [virtual, inherited] |
Set whether the padding value should be used to determine which pixels should be ignored when calculating the similarity measure. Those pixels in the fixed image which have the padding value will be ignored.
| void itk::ImageToImageMetric< TFixedImage, TMovingImage >::SynchronizeTransforms | ( | ) | const [protected, inherited] |
Synchronizes the threader transforms with the transform member variable.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::TransformPoint | ( | unsigned int | sampleNumber, | |
| MovingImagePointType & | mappedPoint, | |||
| bool & | sampleWithinSupportRegion, | |||
| double & | movingImageValue, | |||
| unsigned int | threadID | |||
| ) | const [protected, virtual, inherited] |
Transform a point from FixedImage domain to MovingImage domain. This function also checks if mapped point is within support region.
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::TransformPointWithDerivatives | ( | unsigned int | sampleNumber, | |
| MovingImagePointType & | mappedPoint, | |||
| bool & | sampleWithinSupportRegion, | |||
| double & | movingImageValue, | |||
| ImageDerivativesType & | gradient, | |||
| unsigned int | threadID | |||
| ) | const [protected, virtual, inherited] |
| virtual void itk::Object::UnRegister | ( | ) | const [virtual, inherited] |
Decrease the reference count (release by another object).
Reimplemented from itk::LightObject.
Referenced by itk::SmartPointer< itk::MutualInformationImageToImageMetric >::operator=().
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseAllPixelsOff | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseAllPixelsOn | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseCachingOfBSplineWeightsOff | ( | ) | [virtual, inherited] |
| virtual void itk::ImageToImageMetric< TFixedImage, TMovingImage >::UseCachingOfBSplineWeightsOn | ( | ) | [virtual, inherited] |
Member Data Documentation
BSplineInterpolatorType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineInterpolator [protected, inherited] |
Pointer to BSplineInterpolator.
Definition at line 502 of file itkOptImageToImageMetric.h.
BSplineParametersOffsetType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineParametersOffset [protected, inherited] |
Definition at line 471 of file itkOptImageToImageMetric.h.
MovingImagePointArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplinePreTransformPointsArray [protected, inherited] |
Definition at line 468 of file itkOptImageToImageMetric.h.
BSplineTransformType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransform [protected, inherited] |
Definition at line 464 of file itkOptImageToImageMetric.h.
BSplineTransformIndexArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformIndices [mutable, protected, inherited] |
Definition at line 476 of file itkOptImageToImageMetric.h.
BSplineTransformIndicesArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformIndicesArray [protected, inherited] |
Definition at line 467 of file itkOptImageToImageMetric.h.
BSplineTransformWeightsType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformWeights [mutable, protected, inherited] |
Definition at line 475 of file itkOptImageToImageMetric.h.
BSplineTransformWeightsArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_BSplineTransformWeightsArray [protected, inherited] |
Definition at line 466 of file itkOptImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ComputeGradient [protected, inherited] |
Definition at line 233 of file itkImageToImageMetric.h.
DerivativeFunctionType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_DerivativeCalculator [protected, inherited] |
Pointer to central difference calculator.
Definition at line 505 of file itkOptImageToImageMetric.h.
double itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_Epsilon [protected] |
Definition at line 146 of file itkKullbackLeiblerCompareHistogramImageToImageMetric.h.
FixedImageConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImage [protected, inherited] |
Definition at line 227 of file itkImageToImageMetric.h.
FixedImageIndexContainer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageIndexes [protected, inherited] |
Definition at line 361 of file itkOptImageToImageMetric.h.
FixedImageMaskConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageMask [protected, inherited] |
Definition at line 402 of file itkOptImageToImageMetric.h.
FixedImageMaskPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageMask [mutable, protected, inherited] |
Definition at line 236 of file itkImageToImageMetric.h.
FixedImageSampleContainer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageSamples [protected, inherited] |
Container to store a set of points and fixed image values.
Reimplemented in itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >.
Definition at line 379 of file itkOptImageToImageMetric.h.
FixedImagePixelType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageSamplesIntensityThreshold [protected, inherited] |
Definition at line 362 of file itkOptImageToImageMetric.h.
GradientImagePointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_GradientImage [protected, inherited] |
Definition at line 234 of file itkImageToImageMetric.h.
HistogramSizeType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_HistogramSize [protected, inherited] |
The histogram size.
Definition at line 164 of file itkHistogramImageToImageMetric.h.
InterpolatorPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Interpolator [protected, inherited] |
Definition at line 231 of file itkImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_InterpolatorIsBSpline [protected, inherited] |
Boolean to indicate if the interpolator BSpline.
Definition at line 499 of file itkOptImageToImageMetric.h.
MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_LowerBound [mutable, protected, inherited] |
The lower bound for samples in the histogram.
Definition at line 171 of file itkHistogramImageToImageMetric.h.
bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_LowerBoundSetByUser [protected, inherited] |
Boolean flag to indicate whether the user supplied lower bounds or whether they should be computed from the min of image intensities
Definition at line 181 of file itkHistogramImageToImageMetric.h.
MovingImageConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImage [protected, inherited] |
Definition at line 228 of file itkImageToImageMetric.h.
MovingImageMaskConstPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMask [protected, inherited] |
Definition at line 403 of file itkOptImageToImageMetric.h.
MovingImageMaskPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMask [mutable, protected, inherited] |
Definition at line 237 of file itkImageToImageMetric.h.
unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfFixedImageSamples [mutable, protected, inherited] |
Definition at line 384 of file itkOptImageToImageMetric.h.
unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfMovingImageSamples [mutable, protected, inherited] |
Definition at line 385 of file itkOptImageToImageMetric.h.
unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfParameters [protected, inherited] |
Definition at line 381 of file itkOptImageToImageMetric.h.
unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfPixelsCounted [mutable, protected, inherited] |
Definition at line 225 of file itkImageToImageMetric.h.
unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfThreads [protected, inherited] |
Definition at line 405 of file itkOptImageToImageMetric.h.
unsigned long itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_NumBSplineWeights [protected, inherited] |
The number of BSpline transform weights is the number of of parameter in the support region (per dimension ).
Definition at line 424 of file itkOptImageToImageMetric.h.
ParametersType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Parameters [mutable, protected, inherited] |
Definition at line 382 of file itkOptImageToImageMetric.h.
int itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_RandomSeed [protected, inherited] |
Definition at line 411 of file itkOptImageToImageMetric.h.
InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited] |
Number of uses of this object by other objects.
Definition at line 144 of file itkLightObject.h.
SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited] |
Mutex lock to protect modification to the reference count
Definition at line 147 of file itkLightObject.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ReseedIterator [protected, inherited] |
Definition at line 409 of file itkOptImageToImageMetric.h.
MultiThreaderType::Pointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Threader [protected, inherited] |
Definition at line 525 of file itkOptImageToImageMetric.h.
BSplineTransformIndexArrayType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderBSplineTransformIndices [mutable, protected, inherited] |
Definition at line 479 of file itkOptImageToImageMetric.h.
BSplineTransformWeightsType* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderBSplineTransformWeights [mutable, protected, inherited] |
Definition at line 478 of file itkOptImageToImageMetric.h.
unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderChunkSize [mutable, protected, inherited] |
Definition at line 527 of file itkOptImageToImageMetric.h.
unsigned int* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderNumberOfMovingImageSamples [mutable, protected, inherited] |
Definition at line 529 of file itkOptImageToImageMetric.h.
MultiThreaderParameterType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderParameter [protected, inherited] |
Definition at line 526 of file itkOptImageToImageMetric.h.
unsigned int itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderSizeOfLastChunk [mutable, protected, inherited] |
Definition at line 528 of file itkOptImageToImageMetric.h.
TransformPointer* itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_ThreaderTransform [protected, inherited] |
Copies of Transform helpers per thread (N-1 of them, since m_Transform will do the work for thread=0.
Definition at line 395 of file itkOptImageToImageMetric.h.
TransformPointer itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_Transform [mutable, protected, inherited] |
Main transform to be used in thread = 0
Definition at line 230 of file itkImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_TransformIsBSpline [protected, inherited] |
Types and variables related to BSpline deformable transforms. If the transform is of type third order BSplineDeformableTransform, then we can speed up the metric derivative calculation by only inspecting the parameters within the support region of a mapped point. Boolean to indicate if the transform is BSpline deformable.
Definition at line 420 of file itkOptImageToImageMetric.h.
MeasurementVectorType itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBound [mutable, protected, inherited] |
The upper bound for samples in the histogram.
Definition at line 174 of file itkHistogramImageToImageMetric.h.
double itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBoundIncreaseFactor [protected, inherited] |
The increase in the upper bound.
Definition at line 177 of file itkHistogramImageToImageMetric.h.
bool itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >::m_UpperBoundSetByUser [protected, inherited] |
Boolean flag to indicate whether the user supplied upper bounds or whether they should be computed from the max of image intensities
Definition at line 185 of file itkHistogramImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseAllPixels [protected, inherited] |
Definition at line 407 of file itkOptImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseCachingOfBSplineWeights [protected, inherited] |
Definition at line 474 of file itkOptImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseFixedImageIndexes [protected, inherited] |
Definition at line 360 of file itkOptImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_UseFixedImageSamplesIntensityThreshold [protected, inherited] |
Definition at line 363 of file itkOptImageToImageMetric.h.
BooleanArrayType itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_WithinBSplineSupportRegionArray [protected, inherited] |
Definition at line 469 of file itkOptImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_WithinThreadPostProcess [protected, inherited] |
Definition at line 531 of file itkOptImageToImageMetric.h.
bool itk::ImageToImageMetric< TFixedImage, TMovingImage >::m_WithinThreadPreProcess [protected, inherited] |
Definition at line 530 of file itkOptImageToImageMetric.h.
The documentation for this class was generated from the following file:
