itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions > Class Template Reference
[Transforms]
#include <itkElasticBodyReciprocalSplineKernelTransform.h>
Detailed Description
template<class TScalarType = double, unsigned int NDimensions = 3>
class itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >
This class defines the elastic body spline (EBS) transformation. It is implemented in as straightforward a manner as possible from the IEEE TMI paper by Davis, Khotanzad, Flamig, and Harms, Vol. 16 No. 3 June 1997 Taken from the paper: The EBS "is based on a physical model of a homogeneous, isotropic, three-dimensional elastic body. The model can approximate the way that some physical objects deform".
Definition at line 40 of file itkElasticBodyReciprocalSplineKernelTransform.h.
Member Typedef Documentation
typedef vnl_matrix_fixed<TScalarType ,NDimensions,NDimensions> itk::KernelTransform< TScalarType , NDimensions >::AMatrixType [inherited] |
'A' matrix typedef. Rotational part of the Affine component
Definition at line 217 of file itkKernelTransform.h.
typedef vnl_vector_fixed<TScalarType ,NDimensions> itk::KernelTransform< TScalarType , NDimensions >::BMatrixType [inherited] |
'B' matrix typedef. Translational part of the Affine component
Definition at line 220 of file itkKernelTransform.h.
typedef vnl_matrix_fixed<TScalarType , NDimensions, 1> itk::KernelTransform< TScalarType , NDimensions >::ColumnMatrixType [inherited] |
Column matrix typedef.
Definition at line 226 of file itkKernelTransform.h.
| typedef SmartPointer<const Self> itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::ConstPointer |
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 50 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef vnl_matrix<TScalarType > itk::KernelTransform< TScalarType , NDimensions >::DMatrixType [inherited] |
'D' matrix typedef. Deformation component
Definition at line 214 of file itkKernelTransform.h.
typedef Superclass::GMatrixType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::GMatrixType [protected] |
These (rather redundant) typedefs are needed because on SGI, typedefs are not inherited
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 95 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef vnl_matrix_fixed<TScalarType , NDimensions, NDimensions> itk::KernelTransform< TScalarType , NDimensions >::IMatrixType [inherited] |
'I' (identity) matrix typedef.
Definition at line 141 of file itkKernelTransform.h.
| typedef Superclass::InputCovariantVectorType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::InputCovariantVectorType |
Standard covariant vector type for this class
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
Definition at line 84 of file itkElasticBodyReciprocalSplineKernelTransform.h.
| typedef Superclass::InputPointType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::InputPointType |
These (rather redundant) typedefs are needed because on SGI, typedefs are not inherited
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 76 of file itkElasticBodyReciprocalSplineKernelTransform.h.
| typedef Superclass::InputVectorType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::InputVectorType |
Standard vector type for this class.
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 82 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef vnl_vector_fixed<TScalarType , NInputDimensions> itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::InputVnlVectorType [inherited] |
Standard vnl_vector type for this class.
Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleLogarithmicTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 110 of file itkTransform.h.
typedef int itk::LightObject::InternalReferenceCountType [protected, inherited] |
Define the type of the reference count according to the target. This allows the use of atomic operations
Definition at line 139 of file itkLightObject.h.
typedef InverseTransformBaseType::Pointer itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::InverseTransformBasePointer [inherited] |
Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 127 of file itkTransform.h.
typedef TransformBase itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::InverseTransformBaseType [inherited] |
Base inverse transform type. This type should not be changed to the concrete inverse transform type or inheritance would be lost.
Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 122 of file itkTransform.h.
| typedef Superclass::JacobianType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::JacobianType |
Jacobian type.
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 65 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef vnl_matrix<TScalarType > itk::KernelTransform< TScalarType , NDimensions >::KMatrixType [inherited] |
'K' matrix typedef.
Definition at line 202 of file itkKernelTransform.h.
typedef vnl_matrix<TScalarType > itk::KernelTransform< TScalarType , NDimensions >::LMatrixType [inherited] |
'L' matrix typedef.
Definition at line 199 of file itkKernelTransform.h.
| typedef Superclass::OutputCovariantVectorType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::OutputCovariantVectorType |
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
Definition at line 85 of file itkElasticBodyReciprocalSplineKernelTransform.h.
| typedef Superclass::OutputPointType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::OutputPointType |
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 81 of file itkElasticBodyReciprocalSplineKernelTransform.h.
| typedef Superclass::OutputVectorType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::OutputVectorType |
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 83 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef vnl_vector_fixed<TScalarType , NOutputDimensions> itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::OutputVnlVectorType [inherited] |
Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleLogarithmicTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 111 of file itkTransform.h.
| typedef Superclass::ParametersType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::ParametersType |
Parameters type.
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 62 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef vnl_matrix<TScalarType > itk::KernelTransform< TScalarType , NDimensions >::PMatrixType [inherited] |
'P' matrix typedef.
Definition at line 205 of file itkKernelTransform.h.
| typedef SmartPointer<Self> itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::Pointer |
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 49 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef PointSetType::PointsContainerConstIterator itk::KernelTransform< TScalarType , NDimensions >::PointsConstIterator [inherited] |
Definition at line 112 of file itkKernelTransform.h.
typedef PointSetType::PointsContainer itk::KernelTransform< TScalarType , NDimensions >::PointsContainer [inherited] |
Definition at line 108 of file itkKernelTransform.h.
typedef PointSetType::Pointer itk::KernelTransform< TScalarType , NDimensions >::PointSetPointer [inherited] |
Definition at line 107 of file itkKernelTransform.h.
typedef DefaultStaticMeshTraits<TScalarType , NDimensions, NDimensions, TScalarType , TScalarType > itk::KernelTransform< TScalarType , NDimensions >::PointSetTraitsType [inherited] |
PointList typedef. This type is used for maintaining lists of points, specifically, the source and target landmark lists.
Definition at line 104 of file itkKernelTransform.h.
typedef PointSet<InputPointType, NDimensions, PointSetTraitsType> itk::KernelTransform< TScalarType , NDimensions >::PointSetType [inherited] |
Definition at line 106 of file itkKernelTransform.h.
typedef PointSetType::PointsContainerIterator itk::KernelTransform< TScalarType , NDimensions >::PointsIterator [inherited] |
Reimplemented in itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >, itk::ThinPlateSplineKernelTransform< TScalarType, NDimensions >, and itk::VolumeSplineKernelTransform< TScalarType, NDimensions >.
Definition at line 110 of file itkKernelTransform.h.
typedef vnl_matrix_fixed<TScalarType , 1, NDimensions> itk::KernelTransform< TScalarType , NDimensions >::RowMatrixType [inherited] |
Row matrix typedef.
Definition at line 223 of file itkKernelTransform.h.
| typedef Superclass::ScalarType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::ScalarType |
Scalar type.
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 56 of file itkElasticBodyReciprocalSplineKernelTransform.h.
| typedef ElasticBodyReciprocalSplineKernelTransform itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::Self |
Standard class typedefs.
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 45 of file itkElasticBodyReciprocalSplineKernelTransform.h.
| typedef KernelTransform< TScalarType, NDimensions> itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::Superclass |
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 47 of file itkElasticBodyReciprocalSplineKernelTransform.h.
typedef VectorSetType::Pointer itk::KernelTransform< TScalarType , NDimensions >::VectorSetPointer [inherited] |
Definition at line 116 of file itkKernelTransform.h.
typedef itk::VectorContainer<unsigned long,InputVectorType> itk::KernelTransform< TScalarType , NDimensions >::VectorSetType [inherited] |
VectorSet typedef.
Definition at line 115 of file itkKernelTransform.h.
typedef vnl_matrix<TScalarType > itk::KernelTransform< TScalarType , NDimensions >::WMatrixType [inherited] |
'W' matrix typedef.
Definition at line 211 of file itkKernelTransform.h.
typedef vnl_matrix<TScalarType > itk::KernelTransform< TScalarType , NDimensions >::YMatrixType [inherited] |
'Y' matrix typedef.
Definition at line 208 of file itkKernelTransform.h.
Constructor & Destructor Documentation
| itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::ElasticBodyReciprocalSplineKernelTransform | ( | ) | [protected] |
| virtual itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::~ElasticBodyReciprocalSplineKernelTransform | ( | ) | [protected, virtual] |
Member Function Documentation
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | const [inherited] |
Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | [inherited] |
Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
| static void itk::LightObject::BreakOnError | ( | ) | [static, inherited] |
This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
| void itk::KernelTransform< TScalarType , NDimensions >::ComputeD | ( | ) | [protected, inherited] |
Compute displacements 
.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::ComputeDeformationContribution | ( | const InputPointType & | inputPoint, | |
| OutputPointType & | result | |||
| ) | const [protected, virtual, inherited] |
Compute the contribution of the landmarks weighted by the kernel funcion to the global deformation of the space
Reimplemented in itk::ThinPlateR2LogRSplineKernelTransform< TScalarType, NDimensions >, itk::ThinPlateSplineKernelTransform< TScalarType, NDimensions >, and itk::VolumeSplineKernelTransform< TScalarType, NDimensions >.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::ComputeG | ( | const InputVectorType & | landmarkVector, | |
| GMatrixType & | gmatrix | |||
| ) | const [protected, virtual, inherited] |
Compute G(x) This is essentially the kernel of the transform. By overriding this method, we can obtain (among others): Elastic body spline Thin plate spline Volume spline
| virtual void itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::ComputeG | ( | const InputVectorType & | landmarkVector, | |
| GMatrixType & | gmatrix | |||
| ) | const [protected, virtual] |
Compute G(x) For the elastic body spline, this is: G(x) = [alpha*r(x)*I - 3*x*x'/r(x)] ![$ G(x) = [\alpha*r(x)*I - 3*x*x'/r(x) ]$](form_132.png)
where 
is Poisson's Ratio r(x) = Euclidean norm = sqrt[x1^2 + x2^2 + x3^2]
![\[ r(x) = \sqrt{ x_1^2 + x_2^2 + x_3^2 } \]](form_133.png)
I = identity matrix
| void itk::KernelTransform< TScalarType , NDimensions >::ComputeK | ( | ) | [protected, inherited] |
Compute K matrix.
| void itk::KernelTransform< TScalarType , NDimensions >::ComputeL | ( | ) | [protected, inherited] |
Compute L matrix.
| void itk::KernelTransform< TScalarType , NDimensions >::ComputeP | ( | ) | [protected, inherited] |
Compute P matrix.
| virtual const GMatrixType& itk::KernelTransform< TScalarType , NDimensions >::ComputeReflexiveG | ( | PointsIterator | ) | const [protected, virtual, inherited] |
Compute a G(x) for a point to itself (i.e. for the block diagonal elements of the matrix K. Parameter indicates for which landmark the reflexive G is to be computed. The default implementation for the reflexive contribution is a diagonal matrix where the diagonal elements are the stiffness of the spline.
- Warning:
- this method is not thread-safe. However this method is called only through ComputeWMatrix() that is itself normally called from a single thread during the initialization of the Transform.
| void itk::KernelTransform< TScalarType , NDimensions >::ComputeWMatrix | ( | void | ) | [inherited] |
Compute W matrix.
| void itk::KernelTransform< TScalarType , NDimensions >::ComputeY | ( | ) | [protected, inherited] |
Compute Y matrix.
| virtual LightObject::Pointer itk::Object::CreateAnother | ( | ) | const [virtual, inherited] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
| virtual void itk::Object::DebugOff | ( | ) | const [virtual, inherited] |
Turn debugging output off.
| virtual void itk::Object::DebugOn | ( | ) | const [virtual, inherited] |
Turn debugging output on.
| virtual void itk::LightObject::Delete | ( | ) | [virtual, inherited] |
Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
| virtual TScalarType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::GetAlpha | ( | ) | const [virtual] |
Get alpha
| Command* itk::Object::GetCommand | ( | unsigned long | tag | ) | [inherited] |
Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.
| bool itk::Object::GetDebug | ( | ) | const [inherited] |
Get the value of the debug flag.
| virtual VectorSetType* itk::KernelTransform< TScalarType , NDimensions >::GetDisplacements | ( | ) | [virtual, inherited] |
Get the displacements list, which we will denote 
, where 
.
| virtual const ParametersType& itk::KernelTransform< TScalarType , NDimensions >::GetFixedParameters | ( | void | ) | const [virtual, inherited] |
Get Transform Fixed Parameters - Gets the Target Landmarks
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
| static bool itk::Object::GetGlobalWarningDisplay | ( | ) | [static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
| unsigned int itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetInputSpaceDimension | ( | void | ) | const [inline, virtual, inherited] |
Get the size of the input space
Implements itk::TransformBase.
Definition at line 87 of file itkTransform.h.
| bool itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetInverse | ( | Self * | ) | const [inline, inherited] |
Returns a boolean indicating whether it is possible or not to compute the inverse of this current Transform. If it is possible, then the inverse of the transform is returned in the inverseTransform variable passed by the user. The inverse is recomputed if this current transform has been modified. This method is intended to be overriden by derived classes.
Reimplemented in itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 238 of file itkTransform.h.
| virtual InverseTransformBasePointer itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetInverseTransform | ( | ) | const [inline, virtual, inherited] |
Return an inverse of this transform. If the inverse has not been implemented, return NULL. The type of the inverse transform does not necessarily need to match the type of the forward transform. This allows one to return a numeric inverse transform instead.
Reimplemented in itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 246 of file itkTransform.h.
References NULL.
| virtual const JacobianType& itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetJacobian | ( | const InputPointType & | ) | const [inline, virtual, inherited] |
Compute the Jacobian of the transformation
This method computes the Jacobian matrix of the transformation at a given input point. The rank of the Jacobian will also indicate if the transform is invertible at this point.
The Jacobian is be expressed as a matrix of partial derivatives of the output point components with respect to the parameters that defined the transform:
![\[ J=\left[ \begin{array}{cccc} \frac{\partial x_{1}}{\partial p_{1}} & \frac{\partial x_{1}}{\partial p_{2}} & \cdots & \frac{\partial x_{1}}{\partial p_{m}}\\ \frac{\partial x_{2}}{\partial p_{1}} & \frac{\partial x_{2}}{\partial p_{2}} & \cdots & \frac{\partial x_{2}}{\partial p_{m}}\\ \vdots & \vdots & \ddots & \vdots \\ \frac{\partial x_{n}}{\partial p_{1}} & \frac{\partial x_{n}}{\partial p_{2}} & \cdots & \frac{\partial x_{n}}{\partial p_{m}} \end{array}\right] \]](form_182.png)
Reimplemented in itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 217 of file itkTransform.h.
References itkExceptionMacro.
| virtual const JacobianType& itk::KernelTransform< TScalarType , NDimensions >::GetJacobian | ( | const InputPointType & | point | ) | const [virtual, inherited] |
Compute the Jacobian Matrix of the transformation at one point
| const MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | const [inherited] |
- Returns:
- A constant reference to this objects MetaDataDictionary.
| MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | [inherited] |
| virtual unsigned long itk::Object::GetMTime | ( | ) | const [virtual, inherited] |
Return this objects modified time.
Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, PixelAccessor >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.
Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().
| virtual const char* itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
| virtual unsigned int itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetNumberOfParameters | ( | void | ) | const [inline, virtual, inherited] |
Return the number of parameters that completely define the Transfom
Implements itk::TransformBase.
Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 228 of file itkTransform.h.
| unsigned int itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetOutputSpaceDimension | ( | void | ) | const [inline, virtual, inherited] |
Get the size of the output space
Implements itk::TransformBase.
Definition at line 90 of file itkTransform.h.
| virtual const ParametersType& itk::KernelTransform< TScalarType , NDimensions >::GetParameters | ( | void | ) | const [virtual, inherited] |
Get the Transformation Parameters - Gets the Source Landmarks
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
| virtual int itk::LightObject::GetReferenceCount | ( | ) | const [inline, virtual, inherited] |
Gets the reference count on this object.
Definition at line 106 of file itkLightObject.h.
| virtual PointSetType* itk::KernelTransform< TScalarType , NDimensions >::GetSourceLandmarks | ( | ) | [virtual, inherited] |
Get the source landmarks list, which we will denote 
.
| virtual double itk::KernelTransform< TScalarType , NDimensions >::GetStiffness | ( | ) | const [virtual, inherited] |
Stiffness of the spline. A stiffness of zero results in the standard interpolating spline. A non-zero stiffness allows the spline to approximate rather than interpolate the landmarks. Stiffness values are usually rather small, typically in the range of 0.001 to 0.1. The approximating spline formulation is based on the short paper by R. Sprengel, K. Rohr, H. Stiehl. "Thin-Plate Spline Approximation for Image Registration". In 18th International Conference of the IEEE Engineering in Medicine and Biology Society. 1996.
| virtual PointSetType* itk::KernelTransform< TScalarType , NDimensions >::GetTargetLandmarks | ( | ) | [virtual, inherited] |
Get the target landmarks list, which we will denote 
.
| virtual std::string itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::GetTransformTypeAsString | ( | ) | const [virtual, inherited] |
Generate a platform independant name
Implements itk::TransformBase.
| static void itk::Object::GlobalWarningDisplayOff | ( | ) | [inline, static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Definition at line 100 of file itkObject.h.
References itk::Object::SetGlobalWarningDisplay().
| static void itk::Object::GlobalWarningDisplayOn | ( | ) | [inline, static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Definition at line 98 of file itkObject.h.
References itk::Object::SetGlobalWarningDisplay().
| bool itk::Object::HasObserver | ( | const EventObject & | event | ) | const [inherited] |
Return true if an observer is registered for this event.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | const [inherited] |
Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | [inherited] |
Call Execute on all the Commands observing this event id.
| virtual bool itk::KernelTransform< TScalarType , NDimensions >::IsLinear | ( | ) | const [inline, virtual, inherited] |
This transform is not linear, because the transformation of a linear combination of points is not equal to the linear combination of the transformations of individual points
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
Definition at line 172 of file itkKernelTransform.h.
| itk::KernelTransform< TScalarType , NDimensions >::itkLegacyMacro | ( | virtual const GMatrixType &ComputeG(const InputVectorType &landmarkVector) | const | ) | [protected, inherited] |
- Deprecated:
- in ITK 3.6, please use void ComputeG(vector,gmatrix) instead.
| itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::itkLegacyMacro | ( | virtual const GMatrixType &ComputeG(const InputVectorType &landmarkVector) | const | ) | [protected] |
- Deprecated:
- in ITK 3.6, please use void ComputeG(vector,gmatrix) instead.
| itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::itkStaticConstMacro | ( | OutputSpaceDimension | , | |
| unsigned | int, | |||
| NOutputDimensions | ||||
| ) | [inherited] |
Dimension of the domain space.
| itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::itkStaticConstMacro | ( | InputSpaceDimension | , | |
| unsigned | int, | |||
| NInputDimensions | ||||
| ) | [inherited] |
Dimension of the domain space.
| itk::KernelTransform< TScalarType , NDimensions >::itkStaticConstMacro | ( | SpaceDimension | , | |
| unsigned | int, | |||
| NDimensions | ||||
| ) | [inherited] |
Dimension of the domain space.
| itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::itkStaticConstMacro | ( | SpaceDimension | , | |
| unsigned | int, | |||
| Superclass::SpaceDimension | ||||
| ) |
Dimension of the domain space.
| virtual void itk::Object::Modified | ( | ) | const [virtual, inherited] |
Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, PixelAccessor >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.
Referenced by itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, TOutputImage >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().
| static Pointer itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::New | ( | ) | [static] |
New macro for creation of through a Smart Pointer
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
| void itk::LightObject::Print | ( | std::ostream & | os, | |
| Indent | indent = 0 | |||
| ) | const [inherited] |
Cause the object to print itself out.
Referenced by itk::WeakPointer< ProcessObject >::Print().
| virtual void itk::LightObject::PrintHeader | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| bool itk::Object::PrintObservers | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, inherited] |
| void itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::PrintSelf | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual] |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::KernelTransform< TScalarType, NDimensions >.
| virtual void itk::LightObject::PrintTrailer | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| virtual void itk::Object::Register | ( | ) | const [virtual, inherited] |
Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.
| void itk::Object::RemoveAllObservers | ( | ) | [inherited] |
Remove all observers .
| void itk::Object::RemoveObserver | ( | unsigned long | tag | ) | [inherited] |
Remove the observer with this tag value.
| void itk::KernelTransform< TScalarType , NDimensions >::ReorganizeW | ( | void | ) | [protected, inherited] |
Reorganize the components of W into D (deformable), A (rotation part of affine) and B (translational part of affine ) components.
- Warning:
- This method release the memory of the W Matrix
| virtual void itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::SetAlpha | ( | TScalarType | _arg | ) | [virtual] |
Set alpha. Alpha is related to Poisson's Ratio () as
| void itk::Object::SetDebug | ( | bool | debugFlag | ) | const [inherited] |
Set the value of the debug flag. A non-zero value turns debugging on.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::SetFixedParameters | ( | const ParametersType & | ) | [virtual, inherited] |
Set Transform Fixed Parameters: To support the transform file writer this function was added to set the target landmarks similar to the SetParameters function setting the source landmarks
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
| static void itk::Object::SetGlobalWarningDisplay | ( | bool | flag | ) | [static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().
| void itk::Object::SetMetaDataDictionary | ( | const MetaDataDictionary & | rhs | ) | [inherited] |
- Returns:
- Set the MetaDataDictionary
| virtual void itk::KernelTransform< TScalarType , NDimensions >::SetParameters | ( | const ParametersType & | ) | [virtual, inherited] |
Set the Transformation Parameters and update the internal transformation. The parameters represent the source landmarks. Each landmark point is represented by NDimensions doubles. All the landmarks are concatenated to form one flat Array<double>.
Reimplemented from itk::Transform< TScalarType, NDimensions, NDimensions >.
| virtual void itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::SetParametersByValue | ( | const ParametersType & | p | ) | [inline, virtual, inherited] |
Set the transformation parameters and update internal transformation. This method forces the transform to copy the parameters. The default implementation is to call SetParameters. This call must be overridden if the transform normally implements SetParameters by keeping a reference to the parameters.
- See also:
- SetParameters
Implements itk::TransformBase.
Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >.
Definition at line 163 of file itkTransform.h.
| virtual void itk::Object::SetReferenceCount | ( | int | ) | [virtual, inherited] |
Sets the reference count (use with care)
Reimplemented from itk::LightObject.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::SetSourceLandmarks | ( | PointSetType * | ) | [virtual, inherited] |
Set the source landmarks list.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::SetStiffness | ( | double | _arg | ) | [virtual, inherited] |
Stiffness of the spline. A stiffness of zero results in the standard interpolating spline. A non-zero stiffness allows the spline to approximate rather than interpolate the landmarks. Stiffness values are usually rather small, typically in the range of 0.001 to 0.1. The approximating spline formulation is based on the short paper by R. Sprengel, K. Rohr, H. Stiehl. "Thin-Plate Spline Approximation for Image Registration". In 18th International Conference of the IEEE Engineering in Medicine and Biology Society. 1996.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::SetTargetLandmarks | ( | PointSetType * | ) | [virtual, inherited] |
Set the target landmarks list.
| virtual OutputCovariantVectorType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::TransformCovariantVector | ( | const InputCovariantVectorType & | ) | const [inline, virtual, inherited] |
Method to transform a CovariantVector.
Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::IdentityTransform< TScalarType, NDimensions >, itk::ScaleTransform< TScalarType, NDimensions >, and itk::TranslationTransform< TScalarType, NDimensions >.
Definition at line 142 of file itkTransform.h.
| virtual OutputPointType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::TransformPoint | ( | const InputPointType & | ) | const [inline, virtual, inherited] |
Method to transform a point.
Reimplemented in itk::KernelTransform< TScalarType, NDimensions >.
Definition at line 130 of file itkTransform.h.
| virtual OutputPointType itk::KernelTransform< TScalarType , NDimensions >::TransformPoint | ( | const InputPointType & | thisPoint | ) | const [virtual, inherited] |
Compute the position of point in the new space
| virtual OutputVnlVectorType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::TransformVector | ( | const InputVnlVectorType & | ) | const [inline, virtual, inherited] |
Method to transform a vnl_vector.
Definition at line 138 of file itkTransform.h.
| virtual OutputVectorType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::TransformVector | ( | const InputVectorType & | ) | const [inline, virtual, inherited] |
Method to transform a vector.
Definition at line 134 of file itkTransform.h.
| virtual void itk::Object::UnRegister | ( | ) | const [virtual, inherited] |
Decrease the reference count (release by another object).
Reimplemented from itk::LightObject.
| virtual void itk::KernelTransform< TScalarType , NDimensions >::UpdateParameters | ( | void | ) | const [virtual, inherited] |
Update the Parameters array from the landmarks corrdinates.
Member Data Documentation
TScalarType itk::ElasticBodyReciprocalSplineKernelTransform< TScalarType, NDimensions >::m_Alpha [protected] |
alpha, Poisson's ratio
Definition at line 115 of file itkElasticBodyReciprocalSplineKernelTransform.h.
AMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_AMatrix [protected, inherited] |
Rotatinoal/Shearing part of the Affine component of the Transformation
Definition at line 316 of file itkKernelTransform.h.
BMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_BVector [protected, inherited] |
Translational part of the Affine component of the Transformation
Definition at line 319 of file itkKernelTransform.h.
VectorSetPointer itk::KernelTransform< TScalarType , NDimensions >::m_Displacements [protected, inherited] |
The list of displacements. d[i] = q[i] - p[i];
Definition at line 291 of file itkKernelTransform.h.
DMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_DMatrix [protected, inherited] |
The Deformation matrix. This is an auxiliary matrix that will hold the Deformation (non-affine) part of the transform. Those are the coefficients that will multiply the Kernel function
Definition at line 313 of file itkKernelTransform.h.
ParametersType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::m_FixedParameters [mutable, protected, inherited] |
Definition at line 273 of file itkTransform.h.
GMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_GMatrix [mutable, protected, inherited] |
The G matrix. It is made mutable because m_GMatrix was made an ivar only to avoid copying the matrix at return time
Definition at line 324 of file itkKernelTransform.h.
IMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_I [protected, inherited] |
Identity matrix.
Definition at line 330 of file itkKernelTransform.h.
JacobianType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::m_Jacobian [mutable, protected, inherited] |
Definition at line 274 of file itkTransform.h.
KMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_KMatrix [protected, inherited] |
The K matrix.
Definition at line 297 of file itkKernelTransform.h.
LMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_LMatrix [protected, inherited] |
The L matrix.
Definition at line 294 of file itkKernelTransform.h.
ParametersType itk::Transform< TScalarType , NInputDimensions, NOutputDimensions >::m_Parameters [mutable, protected, inherited] |
Definition at line 272 of file itkTransform.h.
PMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_PMatrix [protected, inherited] |
The P matrix.
Definition at line 300 of file itkKernelTransform.h.
InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited] |
Number of uses of this object by other objects.
Definition at line 144 of file itkLightObject.h.
SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited] |
Mutex lock to protect modification to the reference count
Definition at line 147 of file itkLightObject.h.
PointSetPointer itk::KernelTransform< TScalarType , NDimensions >::m_SourceLandmarks [protected, inherited] |
The list of source landmarks, denoted 'p'.
Definition at line 333 of file itkKernelTransform.h.
double itk::KernelTransform< TScalarType , NDimensions >::m_Stiffness [protected, inherited] |
Stiffness parameter
Definition at line 287 of file itkKernelTransform.h.
PointSetPointer itk::KernelTransform< TScalarType , NDimensions >::m_TargetLandmarks [protected, inherited] |
The list of target landmarks, denoted 'q'.
Definition at line 336 of file itkKernelTransform.h.
WMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_WMatrix [protected, inherited] |
The W matrix.
Definition at line 306 of file itkKernelTransform.h.
bool itk::KernelTransform< TScalarType , NDimensions >::m_WMatrixComputed [protected, inherited] |
Has the W matrix been computed?
Definition at line 327 of file itkKernelTransform.h.
YMatrixType itk::KernelTransform< TScalarType , NDimensions >::m_YMatrix [protected, inherited] |
The Y matrix.
Definition at line 303 of file itkKernelTransform.h.
The documentation for this class was generated from the following file:
