itk::PhilipsPAR Class Reference
[Input and Output Filters]

Class for reading parameters from a Philips PAR file. More...

#include <itkPhilipsPAR.h>

Inheritance diagram for itk::PhilipsPAR:

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Collaboration diagram for itk::PhilipsPAR:

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List of all members.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef VectorContainer < unsigned int, double >	PARBValuesContainer
typedef vnl_vector_fixed < double, PAR_DIFFUSION_VALUES_SIZE >	PARDiffusionValues
typedef VectorContainer < unsigned int, PARDiffusionValues >	PARDiffusionValuesContainer
typedef std::pair< int, int >	PARImageTypeScanSequence
typedef std::vector < PARImageTypeScanSequence >	PARImageTypeScanSequenceVector
typedef VectorContainer < unsigned int, int >	PARLabelTypesASLContainer
typedef vnl_vector_fixed < double, PAR_RESCALE_VALUES_SIZE >	PARRescaleValues
typedef VectorContainer < unsigned int, PARRescaleValues >	PARRescaleValuesContainer
typedef std::pair< int, int >	PARSliceIndexImageType
typedef std::vector < PARSliceIndexImageType >	PARSliceIndexImageTypeVector
typedef std::pair< int, int >	PARSliceIndexScanSequence
typedef std::vector < PARSliceIndexScanSequence >	PARSliceIndexScanSequenceVector
typedef SmartPointer< Self >	Pointer
typedef PhilipsPAR	Self
typedef LightProcessObject	Superclass
Public Member Functions
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual LightObject::Pointer	CreateAnother () const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
virtual const bool &	GetAbortGenerateData ()
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
bool	GetDiffusionGradientOrientationAndBValues (std::string parFile, PARDiffusionValuesContainer gradientValues, PARBValuesContainer bValues)
PARImageTypeScanSequenceVector	GetImageTypesScanningSequence (std::string parFile)
bool	GetLabelTypesASL (std::string parFile, PARLabelTypesASLContainer *labelTypes)
std::string	GetLineNumber (std::string file, int lineNum)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
MetaDataDictionary &	GetMetaDataDictionary (void)
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
bool	GetRECRescaleValues (std::string parFile, PARRescaleValuesContainer *rescaleValues, int scan_sequence)
PARSliceIndexImageTypeVector	GetRECSliceIndexImageTypes (std::string parFile)
PARSliceIndexScanSequenceVector	GetRECSliceIndexScanningSequence (std::string parFile)
virtual int	GetReferenceCount () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &) const
void	InvokeEvent (const EventObject &)
virtual void	Modified () const
void	Print (std::ostream &os, Indent indent=0) const
void	ReadPAR (std::string parFile, struct par_parameter *pPar)
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
virtual void	SetAbortGenerateData (bool _arg)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
virtual void	UpdateOutputData ()
void	UpdateProgress (float amount)


virtual const float &	GetProgress ()
virtual void	SetProgress (float _arg)
Static Public Member Functions
static void	BreakOnError ()
static Pointer	New ()
Protected Member Functions
virtual void	GenerateData ()
	PhilipsPAR ()
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
	~PhilipsPAR ()
Protected Attributes
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock

static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static void	SetGlobalWarningDisplay (bool flag)
unsigned long	AddObserver (const EventObject &event, Command *) const
unsigned long	AddObserver (const EventObject &event, Command *)

virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
typedef int	InternalReferenceCountType

Detailed Description

Class for reading parameters from a Philips PAR file.

See also:: PhilipsRECImageIO

Definition at line 153 of file itkPhilipsPAR.h.

Member Typedef Documentation

typedef SmartPointer<const Self> itk::LightProcessObject::ConstPointer [inherited]

Reimplemented from itk::Object.

Definition at line 78 of file itkLightProcessObject.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

typedef VectorContainer< unsigned int, double > itk::PhilipsPAR::PARBValuesContainer

Definition at line 217 of file itkPhilipsPAR.h.

typedef vnl_vector_fixed< double, PAR_DIFFUSION_VALUES_SIZE > itk::PhilipsPAR::PARDiffusionValues

Definition at line 213 of file itkPhilipsPAR.h.

typedef VectorContainer< unsigned int, PARDiffusionValues > itk::PhilipsPAR::PARDiffusionValuesContainer

Definition at line 215 of file itkPhilipsPAR.h.

typedef std::pair< int, int > itk::PhilipsPAR::PARImageTypeScanSequence

Definition at line 189 of file itkPhilipsPAR.h.

typedef std::vector< PARImageTypeScanSequence > itk::PhilipsPAR::PARImageTypeScanSequenceVector

Definition at line 190 of file itkPhilipsPAR.h.

typedef VectorContainer< unsigned int, int > itk::PhilipsPAR::PARLabelTypesASLContainer

Definition at line 222 of file itkPhilipsPAR.h.

typedef vnl_vector_fixed< double, PAR_RESCALE_VALUES_SIZE > itk::PhilipsPAR::PARRescaleValues

Definition at line 200 of file itkPhilipsPAR.h.

typedef VectorContainer< unsigned int, PARRescaleValues > itk::PhilipsPAR::PARRescaleValuesContainer

Definition at line 202 of file itkPhilipsPAR.h.

typedef std::pair< int, int > itk::PhilipsPAR::PARSliceIndexImageType

Definition at line 175 of file itkPhilipsPAR.h.

typedef std::vector< PARSliceIndexImageType > itk::PhilipsPAR::PARSliceIndexImageTypeVector

Definition at line 176 of file itkPhilipsPAR.h.

typedef std::pair< int, int > itk::PhilipsPAR::PARSliceIndexScanSequence

Definition at line 182 of file itkPhilipsPAR.h.

typedef std::vector< PARSliceIndexScanSequence > itk::PhilipsPAR::PARSliceIndexScanSequenceVector

Definition at line 183 of file itkPhilipsPAR.h.

typedef SmartPointer<Self> itk::PhilipsPAR::Pointer

Reimplemented from itk::LightProcessObject.

Definition at line 159 of file itkPhilipsPAR.h.

typedef PhilipsPAR itk::PhilipsPAR::Self

Standard class typedefs.

Reimplemented from itk::LightProcessObject.

Definition at line 157 of file itkPhilipsPAR.h.

typedef LightProcessObject itk::PhilipsPAR::Superclass

Reimplemented from itk::LightProcessObject.

Definition at line 158 of file itkPhilipsPAR.h.

Constructor & Destructor Documentation

itk::PhilipsPAR::PhilipsPAR ( ) [protected]

itk::PhilipsPAR::~PhilipsPAR ( ) [protected]

Member Function Documentation

virtual void itk::LightProcessObject::AbortGenerateDataOff ( ) [virtual, inherited]

virtual void itk::LightProcessObject::AbortGenerateDataOn ( ) [virtual, inherited]

Turn on and off the AbortGenerateData flag.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			const `[inherited]`

This is a global flag that controls whether any debug, warning or error messages are displayed.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			`[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

static void itk::LightObject::BreakOnError ( ) [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual LightObject::Pointer itk::Object::CreateAnother ( ) const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

virtual void itk::Object::DebugOff ( ) const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn ( ) const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete ( ) [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

virtual void itk::LightProcessObject::GenerateData ( void ) [inline, protected, virtual, inherited]

This method causes the filter to generate its output.

Reimplemented in itk::ClassifierBase< TDataContainer >, itk::ImageClassifierBase< TInputImage, TClassifiedImage >, itk::ImageGaussianModelEstimator< TInputImage, TMembershipFunction, TTrainingImage >, itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >, itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >, itk::LevelSetNeighborhoodExtractor< TLevelSet >, itk::Statistics::SampleClassifier< TSample >, itk::Statistics::SampleClassifierWithMask< TSample, TMaskSample >, itk::ClassifierBase< TInputImage >, and itk::ClassifierBase< TSample >.

Definition at line 123 of file itkLightProcessObject.h.

virtual const bool& itk::LightProcessObject::GetAbortGenerateData ( ) [virtual, inherited]

Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

Command* itk::Object::GetCommand ( unsigned long tag ) [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug ( ) const [inherited]

Get the value of the debug flag.

bool itk::PhilipsPAR::GetDiffusionGradientOrientationAndBValues	(	std::string	parFile,
		PARDiffusionValuesContainer *	gradientValues,
		PARBValuesContainer *	bValues
	)

static bool itk::Object::GetGlobalWarningDisplay ( ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

PARImageTypeScanSequenceVector itk::PhilipsPAR::GetImageTypesScanningSequence ( std::string parFile )

bool itk::PhilipsPAR::GetLabelTypesASL	(	std::string	parFile,
		PARLabelTypesASLContainer *	labelTypes
	)

std::string itk::PhilipsPAR::GetLineNumber	(	std::string	file,
		int	lineNum
	)

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) const [inherited]

Returns:: A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) [inherited]

Returns:: A reference to this objects MetaDataDictionary.

Warning:: This reference may be changed.

virtual unsigned long itk::Object::GetMTime ( ) const [virtual, inherited]

Return this objects modified time.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

virtual const char* itk::PhilipsPAR::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::LightProcessObject.

virtual const float& itk::LightProcessObject::GetProgress ( ) [virtual, inherited]

Get the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

bool itk::PhilipsPAR::GetRECRescaleValues	(	std::string	parFile,
		PARRescaleValuesContainer *	rescaleValues,
		int	scan_sequence
	)

PARSliceIndexImageTypeVector itk::PhilipsPAR::GetRECSliceIndexImageTypes ( std::string parFile )

PARSliceIndexScanSequenceVector itk::PhilipsPAR::GetRECSliceIndexScanningSequence ( std::string parFile )

virtual int itk::LightObject::GetReferenceCount ( ) const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

static void itk::Object::GlobalWarningDisplayOff ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject & event ) const [inherited]

Return true if an observer is registered for this event.

void itk::Object::InvokeEvent ( const EventObject & ) const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

void itk::Object::InvokeEvent ( const EventObject & ) [inherited]

Call Execute on all the Commands observing this event id.

virtual void itk::Object::Modified ( ) const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

static Pointer itk::PhilipsPAR::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::LightProcessObject.

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)			const `[inherited]`

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Define the type of the reference count according to the target. This allows the use of atomic operations

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, inherited]`

void itk::PhilipsPAR::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LightProcessObject.

virtual void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Define the type of the reference count according to the target. This allows the use of atomic operations

void itk::PhilipsPAR::ReadPAR	(	std::string	parFile,
		struct par_parameter *	pPar
	)

virtual void itk::Object::Register ( ) const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers ( ) [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long tag ) [inherited]

Remove the observer with this tag value.

virtual void itk::LightProcessObject::SetAbortGenerateData ( bool _arg ) [virtual, inherited]

Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

void itk::Object::SetDebug ( bool debugFlag ) const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

static void itk::Object::SetGlobalWarningDisplay ( bool flag ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs ) [inherited]

Returns:: Set the MetaDataDictionary

virtual void itk::LightProcessObject::SetProgress ( float _arg ) [virtual, inherited]

Set the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

virtual void itk::Object::SetReferenceCount ( int ) [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

virtual void itk::Object::UnRegister ( ) const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

virtual void itk::LightProcessObject::UpdateOutputData ( ) [virtual, inherited]

Actually generate new output.

void itk::LightProcessObject::UpdateProgress ( float amount ) [inherited]

Update the progress of the process object. If a ProgressMethod exists, executes it. Then set the Progress ivar to amount. The parameter amount should range between (0,1).

Member Data Documentation

InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.

The documentation for this class was generated from the following file:

itkPhilipsPAR.h

itk::PhilipsPAR Class Reference [Input and Output Filters]

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

itk::PhilipsPAR Class Reference
[Input and Output Filters]