itk::bio::CellularAggregateBase Class Reference

Base class for the CellularAggregates. This base class is not templated over the space dimension. More...

#include <itkBioCellularAggregateBase.h>

Inheritance diagram for itk::bio::CellularAggregateBase:

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Collaboration diagram for itk::bio::CellularAggregateBase:

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List of all members.

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef float	ImagePixelType
typedef SmartPointer< Self >	Pointer
typedef CellularAggregateBase	Self
typedef ImagePixelType	SubstrateValueType
typedef Object	Superclass
Public Member Functions
virtual void	Add (CellBase *cellA, CellBase *cellB, double perturbationLength)
virtual LightObject::Pointer	CreateAnother () const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
const MetaDataDictionary &	GetMetaDataDictionary (void) const
MetaDataDictionary &	GetMetaDataDictionary (void)
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
virtual int	GetReferenceCount () const
virtual SubstrateValueType	GetSubstrateValue (unsigned long int cellId, unsigned int substrateId) const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &) const
void	InvokeEvent (const EventObject &)
virtual void	Modified () const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
virtual void	Remove (CellBase *cell)
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	UnRegister () const
Static Public Member Functions
static void	BreakOnError ()
static Pointer	New ()
Protected Member Functions
	CellularAggregateBase (const Self &)
	CellularAggregateBase ()
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual	~CellularAggregateBase ()
Protected Attributes
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
unsigned long	AddObserver (const EventObject &event, Command *) const
unsigned long	AddObserver (const EventObject &event, Command *)
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static void	SetGlobalWarningDisplay (bool flag)
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
typedef int	InternalReferenceCountType

---

Detailed Description

Base class for the CellularAggregates. This base class is not templated over the space dimension.

Definition at line 34 of file itkBioCellularAggregateBase.h.

---

Member Typedef Documentation

typedef SmartPointer<const Self> itk::bio::CellularAggregateBase::ConstPointer

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

Definition at line 41 of file itkBioCellularAggregateBase.h.

typedef float itk::bio::CellularAggregateBase::ImagePixelType

Convenient typedefs.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

Definition at line 47 of file itkBioCellularAggregateBase.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

typedef SmartPointer<Self> itk::bio::CellularAggregateBase::Pointer

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

Definition at line 40 of file itkBioCellularAggregateBase.h.

typedef CellularAggregateBase itk::bio::CellularAggregateBase::Self

Standard class typedefs.

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

Definition at line 38 of file itkBioCellularAggregateBase.h.

typedef ImagePixelType itk::bio::CellularAggregateBase::SubstrateValueType

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

Definition at line 51 of file itkBioCellularAggregateBase.h.

typedef Object itk::bio::CellularAggregateBase::Superclass

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

Definition at line 39 of file itkBioCellularAggregateBase.h.

---

Constructor & Destructor Documentation

itk::bio::CellularAggregateBase::CellularAggregateBase

(

)

[protected]

virtual itk::bio::CellularAggregateBase::~CellularAggregateBase

(

)

[protected, virtual]

itk::bio::CellularAggregateBase::CellularAggregateBase

(

const Self &

)

[protected]

---

Member Function Documentation

virtual void itk::bio::CellularAggregateBase::Add	(	CellBase *	cellA,
		CellBase *	cellB,
		double	perturbationLength
	)			[virtual]

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			const [inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			[inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

static void itk::LightObject::BreakOnError

(

)

[static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual LightObject::Pointer itk::Object::CreateAnother

(

)

const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::CreateObjectFunction< T >, itk::TransformFactoryBase, itk::AnalyzeImageIOFactory, itk::BioRadImageIOFactory, itk::BMPImageIOFactory, itk::Brains2MaskImageIOFactory, itk::DICOMImageIO2Factory, itk::DicomImageIOFactory, itk::GDCMImageIOFactory, itk::GE4ImageIOFactory, itk::GE5ImageIOFactory, itk::GEAdwImageIOFactory, itk::GiplImageIOFactory, itk::JPEGImageIOFactory, itk::LSMImageIOFactory, itk::MetaImageIOFactory, itk::NiftiImageIOFactory, itk::NrrdImageIOFactory, itk::PNGImageIOFactory, itk::RawImageIOFactory< TPixel, VImageDimension >, itk::SiemensVisionImageIOFactory, itk::StimulateImageIOFactory, itk::TIFFImageIOFactory, itk::VTKImageIOFactory, itk::Bruker2DSEQImageIOFactory, itk::MatlabTransformIOFactory, itk::MINC2ImageIOFactory, itk::PhilipsRECImageIOFactory, itk::TxtTransformIOFactory, itk::VoxBoCUBImageIOFactory, and itk::SpatialObjectFactoryBase.

virtual void itk::Object::DebugOff

(

)

const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn

(

)

const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete

(

)

[virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Command* itk::Object::GetCommand

(

unsigned long

tag

)

[inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug

(

)

const [inherited]

Get the value of the debug flag.

static bool itk::Object::GetGlobalWarningDisplay

(

)

[static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

const MetaDataDictionary& itk::Object::GetMetaDataDictionary

(

void

)

const [inherited]

Returns:

A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary

(

void

)

[inherited]

Returns:

A reference to this objects MetaDataDictionary.

Warning:

This reference may be changed.

virtual unsigned long itk::Object::GetMTime

(

)

const [virtual, inherited]

Return this objects modified time.

Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, PixelAccessor >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

virtual const char* itk::bio::CellularAggregateBase::GetNameOfClass

(

)

const [virtual]

Standard part of all itk objects.

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

virtual int itk::LightObject::GetReferenceCount

(

)

const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

virtual SubstrateValueType itk::bio::CellularAggregateBase::GetSubstrateValue	(	unsigned long int	cellId,
		unsigned int	substrateId
	)			const [virtual]

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

static void itk::Object::GlobalWarningDisplayOff

(

)

[inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn

(

)

[inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver

(

const EventObject &

event

)

const [inherited]

Return true if an observer is registered for this event.

void itk::Object::InvokeEvent

(

const EventObject &

)

const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

void itk::Object::InvokeEvent

(

const EventObject &

)

[inherited]

Call Execute on all the Commands observing this event id.

virtual void itk::Object::Modified

(

)

const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, PixelAccessor >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

static Pointer itk::bio::CellularAggregateBase::New

(

)

[static]

Method for creation through the object factory.

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = 0
	)			const [inherited]

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)			const [protected, virtual, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)			const [protected, inherited]

void itk::bio::CellularAggregateBase::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)			const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

virtual void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)			const [protected, virtual, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

virtual void itk::Object::Register

(

)

const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

virtual void itk::bio::CellularAggregateBase::Remove

(

CellBase *

cell

)

[virtual]

Reimplemented in itk::bio::CellularAggregate< NSpaceDimension >.

void itk::Object::RemoveAllObservers

(

)

[inherited]

Remove all observers .

void itk::Object::RemoveObserver

(

unsigned long

tag

)

[inherited]

Remove the observer with this tag value.

void itk::Object::SetDebug

(

bool

debugFlag

)

const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

static void itk::Object::SetGlobalWarningDisplay

(

bool

flag

)

[static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Object::SetMetaDataDictionary

(

const MetaDataDictionary &

rhs

)

[inherited]

Returns:

Set the MetaDataDictionary

virtual void itk::Object::SetReferenceCount

(

int

)

[virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

virtual void itk::Object::UnRegister

(

)

const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

---

Member Data Documentation

InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.

---

The documentation for this class was generated from the following file:

• itkBioCellularAggregateBase.h