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itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage > Class Template Reference
[Operators]

Decomposes an image into directions along basis components. More...

#include <itkImagePCADecompositionCalculator.h>

Inheritance diagram for itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >:
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Collaboration diagram for itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >:
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List of all members.

Public Types

typedef TBasisImage::ConstPointer BasisImageConstPointer
typedef TBasisImage::Pointer BasisImagePointer
typedef std::vector
< BasisImagePointer > 		BasisImagePointerVector
typedef TBasisImage BasisImageType
typedef vnl_matrix
< BasisPixelType > 		BasisMatrixType
typedef TBasisImage::PixelType BasisPixelType
typedef vnl_vector
< BasisPixelType > 		BasisVectorType
typedef SmartPointer< const Self > ConstPointer
typedef TInputImage::ConstPointer InputImageConstPointer
typedef TInputImage::Pointer InputImagePointer
typedef TInputImage InputImageType
typedef
ImagePCAShapeModelEstimator
< TInputImage, TBasisImage >
::Pointer 		ModelPointerType
typedef SmartPointer< Self > Pointer
typedef
ImagePCADecompositionCalculator 		Self
typedef Object Superclass

Public Member Functions

void Compute (void)
virtual LightObject::Pointer CreateAnother () const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
Command * GetCommand (unsigned long tag)
bool GetDebug () const
MetaDataDictionary & GetMetaDataDictionary (void)
const MetaDataDictionary & GetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
virtual BasisVectorType GetProjection () const
virtual int GetReferenceCount () const
bool HasObserver (const EventObject &event) const
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetBasisFromModel (ModelPointerType model)
void SetDebug (bool debugFlag) const
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void UnRegister () const

virtual void SetImage (const InputImageType *_arg)
virtual const InputImageType * GetImage ()

virtual void SetMeanImage (const BasisImageType *_arg)
virtual const BasisImageType * GetMeanImage ()

void SetBasisImages (const BasisImagePointerVector &)
BasisImagePointerVector GetBasisImages ()

unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()

static void SetGlobalWarningDisplay (bool flag)
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOn ()
static void GlobalWarningDisplayOff ()

Static Public Attributes

static const unsigned int BasisImageDimension = TBasisImage::ImageDimension
static const unsigned int InputImageDimension = TInputImage::ImageDimension

Protected Types

typedef int InternalReferenceCountType

Protected Member Functions

void CalculateBasisMatrix (void)
void CalculateRecenteredImageAsVector (void)
 ImagePCADecompositionCalculator ()
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual ~ImagePCADecompositionCalculator ()

virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Detailed Description

template<class TInputImage, class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
class itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >

Decomposes an image into directions along basis components.

This calculator computes the projection of an image into a subspace specified by some basis set of images, and, optionally, a mean image (e.g a translation to a new origin). Typically, this basis/mean image will be the mean and principal components of an image data set, as calculated by an ImagePCAShapeModelEstimator. The output of the calculator is a vnl_vector containing the coefficients along each dimension of the provided basis set. To use this calculator, set the basis images with the SetBasisImage method, and optionally set the mean image with the SetMeanImage method. In the PCA case, the zeroth output of the ImagePCAShapeModelEstimator is the mean image and subsequent outputs are the basis images. SetBasisFromModel is a convenience method to set all of this information from a given ImagePCAShapeModelEstimator instance.

This class is templated over the input image type and the type of images used to describe the basis.

Warning:
This method assumes that the input image consists of scalar pixel types.
All images (input, basis, and mean) must be the same size.
Author:
Zachary Pincus

Definition at line 60 of file itkImagePCADecompositionCalculator.h.

Member Typedef Documentation

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TBasisImage::ConstPointer itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisImageConstPointer

Definition at line 85 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TBasisImage::Pointer itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisImagePointer

Definition at line 81 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef std::vector< BasisImagePointer > itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisImagePointerVector

Vector of basis image pointers.

Definition at line 100 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TBasisImage itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisImageType

Definition at line 77 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef vnl_matrix<BasisPixelType> itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisMatrixType

Type definitions for internal vectors and matrices

Definition at line 103 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TBasisImage::PixelType itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisPixelType

Basis image pixel type: this is also the type of the optput vector

Definition at line 88 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef vnl_vector<BasisPixelType> itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisVectorType

Definition at line 104 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef SmartPointer<const Self> itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::ConstPointer

Reimplemented from itk::Object.

Definition at line 67 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TInputImage::ConstPointer itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::InputImageConstPointer

Const Pointer type for the image.

Definition at line 84 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TInputImage::Pointer itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::InputImagePointer

Pointer types for the image.

Definition at line 80 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef TInputImage itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::InputImageType

Type definitions for the input images.

Definition at line 73 of file itkImagePCADecompositionCalculator.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef ImagePCAShapeModelEstimator<TInputImage, TBasisImage>::Pointer itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::ModelPointerType

Type definition of a compatible ImagePCAShapeModelEstimator

Definition at line 123 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef SmartPointer<Self> itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::Pointer

Reimplemented from itk::Object.

Definition at line 66 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef ImagePCADecompositionCalculator itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::Self

Standard class typedefs.

Reimplemented from itk::Object.

Definition at line 64 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
typedef Object itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::Superclass

Reimplemented from itk::Object.

Definition at line 65 of file itkImagePCADecompositionCalculator.h.

Constructor & Destructor Documentation

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::ImagePCADecompositionCalculator (  )  [protected]
template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::~ImagePCADecompositionCalculator (  )  [inline, protected, virtual]

Definition at line 137 of file itkImagePCADecompositionCalculator.h.

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) const [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

static void itk::LightObject::BreakOnError (  )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::CalculateBasisMatrix ( void   )  [protected]
template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::CalculateRecenteredImageAsVector ( void   )  [protected]
template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::Compute ( void   ) 

Compute the PCA decomposition of the input image.

virtual LightObject::Pointer itk::Object::CreateAnother (  )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::CreateObjectFunction< T >, itk::TransformFactoryBase, itk::AnalyzeImageIOFactory, itk::BioRadImageIOFactory, itk::BMPImageIOFactory, itk::Brains2MaskImageIOFactory, itk::DICOMImageIO2Factory, itk::DicomImageIOFactory, itk::GDCMImageIOFactory, itk::GE4ImageIOFactory, itk::GE5ImageIOFactory, itk::GEAdwImageIOFactory, itk::GiplImageIOFactory, itk::JPEGImageIOFactory, itk::LSMImageIOFactory, itk::MetaImageIOFactory, itk::NiftiImageIOFactory, itk::NrrdImageIOFactory, itk::PNGImageIOFactory, itk::RawImageIOFactory< TPixel, VImageDimension >, itk::SiemensVisionImageIOFactory, itk::StimulateImageIOFactory, itk::TIFFImageIOFactory, itk::VTKImageIOFactory, itk::Bruker2DSEQImageIOFactory, itk::MatlabTransformIOFactory, itk::MINC2ImageIOFactory, itk::MRCImageIOFactory, itk::PhilipsRECImageIOFactory, itk::TxtTransformIOFactory, itk::VoxBoCUBImageIOFactory, itk::VTKImageIO2Factory, and itk::SpatialObjectFactoryBase.

virtual void itk::Object::DebugOff (  )  const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn (  )  const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete (  )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
BasisImagePointerVector itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::GetBasisImages (  )  [inline]

Set and get the basis images.

Definition at line 118 of file itkImagePCADecompositionCalculator.h.

Command* itk::Object::GetCommand ( unsigned long  tag  )  [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug (  )  const [inherited]

Get the value of the debug flag.

static bool itk::Object::GetGlobalWarningDisplay (  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual const InputImageType* itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::GetImage (  )  [virtual]

Set and get the input image.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual const BasisImageType* itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::GetMeanImage (  )  [virtual]

Set and get the mean image.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  [inherited]
Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.
const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  const [inherited]
Returns:
A constant reference to this objects MetaDataDictionary.
virtual unsigned long itk::Object::GetMTime (  )  const [virtual, inherited]

Return this objects modified time.

Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual const char* itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::GetNameOfClass (  )  const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::Object.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual BasisVectorType itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::GetProjection (  )  const [virtual]

Return the projection of the image.

virtual int itk::LightObject::GetReferenceCount (  )  const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

static void itk::Object::GlobalWarningDisplayOff (  )  [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn (  )  [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event  )  const [inherited]

Return true if an observer is registered for this event.

void itk::Object::InvokeEvent ( const EventObject &   )  [inherited]

Call Execute on all the Commands observing this event id.

void itk::Object::InvokeEvent ( const EventObject &   )  const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

virtual void itk::Object::Modified (  )  const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
static Pointer itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::New (  )  [static]

Method for creation through the object factory.

Reimplemented from itk::Object.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const [inherited]

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const [protected, inherited]
template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

virtual void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

virtual void itk::Object::Register (  )  const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers (  )  [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long  tag  )  [inherited]

Remove the observer with this tag value.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::SetBasisFromModel ( ModelPointerType  model  ) 

Set the basis images from a ImagePCAShapeModelEstimator

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::SetBasisImages ( const BasisImagePointerVector &   ) 

Set and get the basis images.

void itk::Object::SetDebug ( bool  debugFlag  )  const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

static void itk::Object::SetGlobalWarningDisplay ( bool  flag  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::SetImage ( const InputImageType *  _arg  )  [virtual]

Set and get the input image.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
virtual void itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::SetMeanImage ( const BasisImageType *  _arg  )  [virtual]

Set and get the mean image.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs  )  [inherited]
Returns:
Set the MetaDataDictionary
virtual void itk::Object::SetReferenceCount ( int   )  [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

virtual void itk::Object::UnRegister (  )  const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

Member Data Documentation

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
const unsigned int itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::BasisImageDimension = TBasisImage::ImageDimension [static]

Basis Image dimension

Definition at line 96 of file itkImagePCADecompositionCalculator.h.

template<class TInputImage , class TBasisImage = Image<double, ::itk::GetImageDimension<TInputImage>::ImageDimension>>
const unsigned int itk::ImagePCADecompositionCalculator< TInputImage, TBasisImage >::InputImageDimension = TInputImage::ImageDimension [static]

Input Image dimension

Definition at line 92 of file itkImagePCADecompositionCalculator.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.

The documentation for this class was generated from the following file:
Generated at Mon Jul 12 2010 23:13:13 for ITK by doxygen 1.7.1 written by Dimitri van Heesch, © 1997-2000