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itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage > Class Template Reference
[Transforms]

LandmarkBasedTransformInitializer is a helper class intended to The class computes the transform that aligns the fixed and moving images given a set of landmarks. The class is templated over the Transform type. The transform computed gives the best fit transform that maps the fixed and moving images in a least squares sense. The indices are taken to correspond, so point 1 in the first set will get mapped close to point 1 in the second set, etc. An equal number of fixed and moving landmarks need to be specified using SetFixedLandmarks() SetMovingLandmarks(). Any number of landmarks may be specified. Call InitializeTransform() to initialize the transform. More...

#include <itkLandmarkBasedTransformInitializer.h>

Inheritance diagram for itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >:
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Collaboration diagram for itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >:
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List of all members.

Public Types

typedef SmartPointer< const Self > ConstPointer
typedef
FixedImageType::ConstPointer 		FixedImagePointer
typedef TFixedImage FixedImageType
typedef
TransformType::InputPointType 		InputPointType
typedef std::vector
< LandmarkPointType > 		LandmarkPointContainer
typedef Point< double,
itkGetStaticConstMacro(ImageDimension) > 		LandmarkPointType
typedef
MovingImageType::ConstPointer 		MovingImagePointer
typedef TMovingImage MovingImageType
typedef
TransformType::OutputVectorType 		OutputVectorType
typedef
TransformType::ParametersType 		ParametersType
typedef ParametersType::ValueType ParameterValueType
typedef SmartPointer< Self > Pointer
typedef
LandmarkPointContainer::const_iterator 		PointsContainerConstIterator
typedef Rigid2DTransform
< ParameterValueType > 		Rigid2DTransformType
typedef
LandmarkBasedTransformInitializer 		Self
typedef Object Superclass
typedef TransformType::Pointer TransformPointer
typedef TTransform TransformType
typedef VersorRigid3DTransform
< ParameterValueType > 		VersorRigid3DTransformType

Public Member Functions

virtual LightObject::Pointer CreateAnother () const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
Command * GetCommand (unsigned long tag)
bool GetDebug () const
MetaDataDictionary & GetMetaDataDictionary (void)
const MetaDataDictionary & GetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
virtual int GetReferenceCount () const
bool HasObserver (const EventObject &event) const
virtual void InitializeTransform ()
void InvokeEvent (const EventObject &)
void InvokeEvent (const EventObject &) const
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetDebug (bool debugFlag) const
void SetFixedLandmarks (const LandmarkPointContainer &fixedLandmarks)
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
void SetMovingLandmarks (const LandmarkPointContainer &movingLandmarks)
virtual void SetReferenceCount (int)
virtual void SetTransform (TransformType *_arg)
virtual void UnRegister () const

void SetFixedImage (const FixedImageType *image)

void SetMovingImage (const MovingImageType *image)

unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()

static void SetGlobalWarningDisplay (bool flag)
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOn ()
static void GlobalWarningDisplayOff ()

Static Public Attributes

static const unsigned int ImageDimension = FixedImageType::ImageDimension

static const unsigned int InputSpaceDimension = TransformType::InputSpaceDimension
static const unsigned int OutputSpaceDimension = TransformType::OutputSpaceDimension

Protected Types

enum  InputTransformType {
  VersorRigid3Dtransform = 1,
  Rigid2Dtransfrom,
  Else
}

typedef int InternalReferenceCountType

Protected Member Functions

 LandmarkBasedTransformInitializer ()
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
 ~LandmarkBasedTransformInitializer ()

virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Detailed Description

template<class TTransform, class TFixedImage, class TMovingImage>
class itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >

LandmarkBasedTransformInitializer is a helper class intended to The class computes the transform that aligns the fixed and moving images given a set of landmarks. The class is templated over the Transform type. The transform computed gives the best fit transform that maps the fixed and moving images in a least squares sense. The indices are taken to correspond, so point 1 in the first set will get mapped close to point 1 in the second set, etc. An equal number of fixed and moving landmarks need to be specified using SetFixedLandmarks() SetMovingLandmarks(). Any number of landmarks may be specified. Call InitializeTransform() to initialize the transform.

Currently, the following transforms are supported by the class: VersorRigid3DTransform Rigid2DTansform

The class is based in part on Hybrid/vtkLandmarkTransform originally implemented in python by David G. Gobbi.

The solution is based on Berthold K. P. Horn (1987), "Closed-form solution of absolute orientation using unit quaternions," http://people.csail.mit.edu/bkph/papers/Absolute_Orientation.pdf

Definition at line 61 of file itkLandmarkBasedTransformInitializer.h.

Member Typedef Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
typedef SmartPointer<const Self> itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ConstPointer

Reimplemented from itk::Object.

Definition at line 69 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef FixedImageType::ConstPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::FixedImagePointer

Definition at line 93 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TFixedImage itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::FixedImageType

Image Types to use in the initialization of the transform

Definition at line 87 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::InputPointType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InputPointType

Convenience typedefs

Definition at line 129 of file itkLandmarkBasedTransformInitializer.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef std::vector< LandmarkPointType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkPointContainer

Definition at line 132 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef Point< double, itkGetStaticConstMacro(ImageDimension) > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkPointType

Definition at line 131 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef MovingImageType::ConstPointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::MovingImagePointer

Definition at line 94 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TMovingImage itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::MovingImageType

Definition at line 91 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::OutputVectorType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::OutputVectorType

Definition at line 130 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::ParametersType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ParametersType

Definition at line 135 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef ParametersType::ValueType itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ParameterValueType

Definition at line 136 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef SmartPointer<Self> itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Pointer

Reimplemented from itk::Object.

Definition at line 68 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef LandmarkPointContainer::const_iterator itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::PointsContainerConstIterator

Definition at line 134 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef Rigid2DTransform< ParameterValueType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Rigid2DTransformType

Definition at line 156 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef LandmarkBasedTransformInitializer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Self

Standard class typedefs.

Reimplemented from itk::Object.

Definition at line 66 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef Object itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::Superclass

Reimplemented from itk::Object.

Definition at line 67 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TransformType::Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::TransformPointer

Definition at line 79 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef TTransform itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::TransformType

Type of the transform to initialize

Definition at line 75 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
typedef VersorRigid3DTransform< ParameterValueType > itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::VersorRigid3DTransformType

Supported Transform typedefs

Definition at line 155 of file itkLandmarkBasedTransformInitializer.h.

Member Enumeration Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
enum itk::LandmarkBasedTransformInitializer::InputTransformType [protected]
Enumerator:
VersorRigid3Dtransform 
Rigid2Dtransfrom 
Else 

Definition at line 169 of file itkLandmarkBasedTransformInitializer.h.

Constructor & Destructor Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::LandmarkBasedTransformInitializer (  )  [protected]
template<class TTransform , class TFixedImage , class TMovingImage >
itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::~LandmarkBasedTransformInitializer (  )  [inline, protected]

Definition at line 164 of file itkLandmarkBasedTransformInitializer.h.

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) const [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

static void itk::LightObject::BreakOnError (  )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual LightObject::Pointer itk::Object::CreateAnother (  )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::CreateObjectFunction< T >, itk::TransformFactoryBase, itk::AnalyzeImageIOFactory, itk::BioRadImageIOFactory, itk::BMPImageIOFactory, itk::Brains2MaskImageIOFactory, itk::DICOMImageIO2Factory, itk::DicomImageIOFactory, itk::GDCMImageIOFactory, itk::GE4ImageIOFactory, itk::GE5ImageIOFactory, itk::GEAdwImageIOFactory, itk::GiplImageIOFactory, itk::JPEGImageIOFactory, itk::LSMImageIOFactory, itk::MetaImageIOFactory, itk::NiftiImageIOFactory, itk::NrrdImageIOFactory, itk::PNGImageIOFactory, itk::RawImageIOFactory< TPixel, VImageDimension >, itk::SiemensVisionImageIOFactory, itk::StimulateImageIOFactory, itk::TIFFImageIOFactory, itk::VTKImageIOFactory, itk::Bruker2DSEQImageIOFactory, itk::MatlabTransformIOFactory, itk::MINC2ImageIOFactory, itk::MRCImageIOFactory, itk::PhilipsRECImageIOFactory, itk::TxtTransformIOFactory, itk::VoxBoCUBImageIOFactory, itk::VTKImageIO2Factory, and itk::SpatialObjectFactoryBase.

virtual void itk::Object::DebugOff (  )  const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn (  )  const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete (  )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Command* itk::Object::GetCommand ( unsigned long  tag  )  [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug (  )  const [inherited]

Get the value of the debug flag.

static bool itk::Object::GetGlobalWarningDisplay (  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  const [inherited]
Returns:
A constant reference to this objects MetaDataDictionary.
MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  [inherited]
Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.
virtual unsigned long itk::Object::GetMTime (  )  const [virtual, inherited]

Return this objects modified time.

Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

template<class TTransform , class TFixedImage , class TMovingImage >
virtual const char* itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::GetNameOfClass (  )  const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::Object.

virtual int itk::LightObject::GetReferenceCount (  )  const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

static void itk::Object::GlobalWarningDisplayOff (  )  [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn (  )  [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event  )  const [inherited]

Return true if an observer is registered for this event.

template<class TTransform , class TFixedImage , class TMovingImage >
virtual void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InitializeTransform (  )  [virtual]

Initialize the transform from the landmarks

void itk::Object::InvokeEvent ( const EventObject &   )  [inherited]

Call Execute on all the Commands observing this event id.

void itk::Object::InvokeEvent ( const EventObject &   )  const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

virtual void itk::Object::Modified (  )  const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

template<class TTransform , class TFixedImage , class TMovingImage >
static Pointer itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::New (  )  [static]

New macro for creation of through a Smart Pointer.

Reimplemented from itk::Object.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const [inherited]

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const [protected, inherited]
template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

virtual void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

virtual void itk::Object::Register (  )  const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers (  )  [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long  tag  )  [inherited]

Remove the observer with this tag value.

void itk::Object::SetDebug ( bool  debugFlag  )  const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetFixedImage ( const FixedImageType *  image  )  [inline]
Deprecated:
Set the fixed image. The method really doesn't do anything. The goal of this class is to compute the optimal transform, for the templated TransformType between the fixed and moving image grid, given a set of landmarks. Nothing is done with the images themselves. The method will therefore be deprecated and removed

Definition at line 103 of file itkLandmarkBasedTransformInitializer.h.

References itkLegacyBodyMacro.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetFixedLandmarks ( const LandmarkPointContainer &  fixedLandmarks  )  [inline]

Set the Fixed landmark point containers

Definition at line 141 of file itkLandmarkBasedTransformInitializer.h.

static void itk::Object::SetGlobalWarningDisplay ( bool  flag  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs  )  [inherited]
Returns:
Set the MetaDataDictionary
template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetMovingImage ( const MovingImageType *  image  )  [inline]
Deprecated:
Set the moving image. The method really doesn't do anything. The goal of this class is to compute the optimal transform, for the templated TransformType between the fixed and moving image grid, given a set of landmarks. Nothing is done with the images themselves. The method will therefore be deprecated and removed.

Definition at line 117 of file itkLandmarkBasedTransformInitializer.h.

References itkLegacyBodyMacro.

template<class TTransform , class TFixedImage , class TMovingImage >
void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetMovingLandmarks ( const LandmarkPointContainer &  movingLandmarks  )  [inline]

Set the Moving landmark point containers

Definition at line 147 of file itkLandmarkBasedTransformInitializer.h.

virtual void itk::Object::SetReferenceCount ( int   )  [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

template<class TTransform , class TFixedImage , class TMovingImage >
virtual void itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::SetTransform ( TransformType *  _arg  )  [virtual]

Set the transform to be initialized

virtual void itk::Object::UnRegister (  )  const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

Member Data Documentation

template<class TTransform , class TFixedImage , class TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::ImageDimension = FixedImageType::ImageDimension [static]

Determine the image dimension.

Definition at line 126 of file itkLandmarkBasedTransformInitializer.h.

template<class TTransform , class TFixedImage , class TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::InputSpaceDimension = TransformType::InputSpaceDimension [static]

Dimension of parameters.

Definition at line 82 of file itkLandmarkBasedTransformInitializer.h.

InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.

template<class TTransform , class TFixedImage , class TMovingImage >
const unsigned int itk::LandmarkBasedTransformInitializer< TTransform, TFixedImage, TMovingImage >::OutputSpaceDimension = TransformType::OutputSpaceDimension [static]

Dimension of parameters.

Definition at line 83 of file itkLandmarkBasedTransformInitializer.h.

The documentation for this class was generated from the following file:
Generated at Mon Jul 12 2010 23:49:35 for ITK by doxygen 1.7.1 written by Dimitri van Heesch, © 1997-2000