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itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField > Class Template Reference

a cost function for optimization More...

#include <itkMRIBiasFieldCorrectionFilter.h>

Inheritance diagram for itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >:
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Collaboration diagram for itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >:
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List of all members.

Public Types

typedef TBiasField BiasFieldType
typedef SmartPointer< const Self > ConstPointer
typedef Superclass::DerivativeType DerivativeType
typedef ImageType::PixelType ImageElementType
typedef ImageType::IndexType ImageIndexType
typedef ImageType::Pointer ImagePointer
typedef ImageType::RegionType ImageRegionType
typedef TImage ImageType
typedef CompositeValleyFunction InternalEnergyFunction
typedef MaskType::PixelType MaskElementType
typedef MaskType::Pointer MaskPointer
typedef TImageMask MaskType
typedef Superclass::MeasureType MeasureType
typedef Superclass::ParametersType ParametersType
typedef double ParametersValueType
typedef SmartPointer< Self > Pointer
typedef unsigned int SamplingFactorType [SpaceDimension]
typedef MRIBiasEnergyFunction Self
typedef SingleValuedCostFunction Superclass

Public Member Functions

virtual LightObject::Pointer CreateAnother () const
virtual void DebugOff () const
virtual void DebugOn () const
virtual void Delete ()
Command * GetCommand (unsigned long tag)
bool GetDebug () const
virtual void GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const =0
void GetDerivative (const ParametersType &, DerivativeType &) const
double GetEnergy0 (double diff)
MetaDataDictionary & GetMetaDataDictionary (void)
const MetaDataDictionary & GetMetaDataDictionary (void) const
virtual unsigned long GetMTime () const
virtual const char * GetNameOfClass () const
unsigned int GetNumberOfParameters (void) const
virtual int GetReferenceCount () const
virtual MeasureType GetValue (const ParametersType &parameters) const =0
MeasureType GetValue (const ParametersType &parameters) const
bool HasObserver (const EventObject &event) const
void InitializeDistributions (Array< double > classMeans, Array< double > classSigmas)
void InvokeEvent (const EventObject &) const
void InvokeEvent (const EventObject &)
virtual void Modified () const
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
void RemoveAllObservers ()
void RemoveObserver (unsigned long tag)
void SetBiasField (BiasFieldType *bias)
void SetDebug (bool debugFlag) const
virtual void SetImage (ImageType *_arg)
virtual void SetMask (MaskType *_arg)
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void SetReferenceCount (int)
virtual void SetRegion (ImageRegionType _arg)
virtual void UnRegister () const

void SetSamplingFactors (SamplingFactorType factor)

virtual void GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

unsigned long AddObserver (const EventObject &event, Command *)
unsigned long AddObserver (const EventObject &event, Command *) const

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()

static void SetGlobalWarningDisplay (bool flag)
static bool GetGlobalWarningDisplay ()
static void GlobalWarningDisplayOn ()
static void GlobalWarningDisplayOff ()

Static Public Attributes

static const unsigned int SpaceDimension = 3

Protected Types

typedef int InternalReferenceCountType

Protected Member Functions

 MRIBiasEnergyFunction ()
bool PrintObservers (std::ostream &os, Indent indent) const
void PrintSelf (std::ostream &os, Indent indent) const
virtual ~MRIBiasEnergyFunction ()

virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

InternalReferenceCountType m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock

Detailed Description

template<class TImage, class TImageMask, class TBiasField>
class itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >

a cost function for optimization

This is a wrapping class which provides interfaces between images, the bias field, the internal energy function (CompositeValleyFunction), and the Optimizer.

This class is templated over the type of the input image (TImage), the image mask (which tells which pixels in the input image should be included for energy value calculation), and the bias field (TBiasField).

Definition at line 48 of file itkMRIBiasFieldCorrectionFilter.h.

Member Typedef Documentation

template<class TImage , class TImageMask , class TBiasField >
typedef TBiasField itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::BiasFieldType

Bias field type definition.

Definition at line 74 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef SmartPointer<const Self> itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ConstPointer

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 55 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef Superclass::DerivativeType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::DerivativeType

Not used, but expected by SingleValuedNonLinearOptimizer class.

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 81 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef ImageType::PixelType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ImageElementType

Definition at line 66 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef ImageType::IndexType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ImageIndexType

Definition at line 67 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef ImageType::Pointer itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ImagePointer

Definition at line 65 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef ImageType::RegionType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ImageRegionType

Definition at line 68 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef TImage itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ImageType

Image related type definitions.

Definition at line 61 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef CompositeValleyFunction itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::InternalEnergyFunction

The type of the internal energy function.

Definition at line 89 of file itkMRIBiasFieldCorrectionFilter.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

template<class TImage , class TImageMask , class TBiasField >
typedef MaskType::PixelType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::MaskElementType

Definition at line 71 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef MaskType::Pointer itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::MaskPointer

Definition at line 70 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef TImageMask itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::MaskType

Definition at line 69 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef Superclass::MeasureType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::MeasureType

The cost value type.

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 84 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef Superclass::ParametersType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::ParametersType

Parameters type for optimizier (coefficients type for bias field estimate).

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 78 of file itkMRIBiasFieldCorrectionFilter.h.

typedef double itk::CostFunction::ParametersValueType [inherited]

ParametersType typedef. It defines a position in the optimization search space.

Definition at line 46 of file itkCostFunction.h.

template<class TImage , class TImageMask , class TBiasField >
typedef SmartPointer<Self> itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::Pointer

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 54 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef unsigned int itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SamplingFactorType[SpaceDimension]

The type of the sampling factors

Definition at line 92 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef MRIBiasEnergyFunction itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::Self

Standard class typedefs.

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 52 of file itkMRIBiasFieldCorrectionFilter.h.

template<class TImage , class TImageMask , class TBiasField >
typedef SingleValuedCostFunction itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::Superclass

Reimplemented from itk::SingleValuedCostFunction.

Definition at line 53 of file itkMRIBiasFieldCorrectionFilter.h.

Constructor & Destructor Documentation

template<class TImage , class TImageMask , class TBiasField >
itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::MRIBiasEnergyFunction (  )  [protected]

Constructor:

template<class TImage , class TImageMask , class TBiasField >
virtual itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::~MRIBiasEnergyFunction (  )  [protected, virtual]

Destructor:

Member Function Documentation

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver ( const EventObject &  event,
Command *   
) const [inherited]

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

static void itk::LightObject::BreakOnError (  )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual LightObject::Pointer itk::Object::CreateAnother (  )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

Reimplemented in itk::BSplineDeformableTransform< TScalarType, NDimensions, VSplineOrder >, itk::CreateObjectFunction< T >, itk::TransformFactoryBase, itk::AnalyzeImageIOFactory, itk::BioRadImageIOFactory, itk::BMPImageIOFactory, itk::Brains2MaskImageIOFactory, itk::DICOMImageIO2Factory, itk::DicomImageIOFactory, itk::GDCMImageIOFactory, itk::GE4ImageIOFactory, itk::GE5ImageIOFactory, itk::GEAdwImageIOFactory, itk::GiplImageIOFactory, itk::JPEGImageIOFactory, itk::LSMImageIOFactory, itk::MetaImageIOFactory, itk::NiftiImageIOFactory, itk::NrrdImageIOFactory, itk::PNGImageIOFactory, itk::RawImageIOFactory< TPixel, VImageDimension >, itk::SiemensVisionImageIOFactory, itk::StimulateImageIOFactory, itk::TIFFImageIOFactory, itk::VTKImageIOFactory, itk::Bruker2DSEQImageIOFactory, itk::MatlabTransformIOFactory, itk::MINC2ImageIOFactory, itk::MRCImageIOFactory, itk::PhilipsRECImageIOFactory, itk::TxtTransformIOFactory, itk::VoxBoCUBImageIOFactory, itk::VTKImageIO2Factory, and itk::SpatialObjectFactoryBase.

virtual void itk::Object::DebugOff (  )  const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn (  )  const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete (  )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

Command* itk::Object::GetCommand ( unsigned long  tag  )  [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug (  )  const [inherited]

Get the value of the debug flag.

template<class TImage , class TImageMask , class TBiasField >
void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::GetDerivative ( const ParametersType &  ,
DerivativeType &   
) const [inline]

Dummy implementation to confirm to the SingleValuedCostFunction interfaces. It is pure virtual in the superclass

Definition at line 131 of file itkMRIBiasFieldCorrectionFilter.h.

virtual void itk::SingleValuedCostFunction::GetDerivative ( const ParametersType &  parameters,
DerivativeType &  derivative 
) const [pure virtual, inherited]

This method returns the derivative of the cost function corresponding to the specified parameters.

Implemented in itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >.

template<class TImage , class TImageMask , class TBiasField >
double itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::GetEnergy0 ( double  diff  )  [inline]

Get an energy value for the intensity difference between a pixel and its corresponding bias.

Definition at line 120 of file itkMRIBiasFieldCorrectionFilter.h.

static bool itk::Object::GetGlobalWarningDisplay (  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  [inherited]
Returns:
A reference to this objects MetaDataDictionary.
Warning:
This reference may be changed.
const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void   )  const [inherited]
Returns:
A constant reference to this objects MetaDataDictionary.
virtual unsigned long itk::Object::GetMTime (  )  const [virtual, inherited]

Return this objects modified time.

Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::TransformToDeformationFieldSource< TOutputImage, TTransformPrecisionType >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

template<class TImage , class TImageMask , class TBiasField >
virtual const char* itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::GetNameOfClass (  )  const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::SingleValuedCostFunction.

template<class TImage , class TImageMask , class TBiasField >
unsigned int itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::GetNumberOfParameters ( void   )  const [virtual]

Return the number of parameters required to compute this cost function. This method MUST be overloaded by derived classes.

Implements itk::CostFunction.

virtual int itk::LightObject::GetReferenceCount (  )  const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

template<class TImage , class TImageMask , class TBiasField >
MeasureType itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::GetValue ( const ParametersType &  parameters  )  const

Gets the total energy value of an image or a slice using the given parameters.

virtual MeasureType itk::SingleValuedCostFunction::GetValue ( const ParametersType &  parameters  )  const [pure virtual, inherited]

This method returns the value of the cost function corresponding to the specified parameters.

Implemented in itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >.

virtual void itk::SingleValuedCostFunction::GetValueAndDerivative ( const ParametersType &  parameters,
MeasureType &  value,
DerivativeType &  derivative 
) const [inline, virtual, inherited]

This method returns the value and derivative of the cost function corresponding to the specified parameters

Definition at line 71 of file itkSingleValuedCostFunction.h.

static void itk::Object::GlobalWarningDisplayOff (  )  [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn (  )  [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject &  event  )  const [inherited]

Return true if an observer is registered for this event.

template<class TImage , class TImageMask , class TBiasField >
void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::InitializeDistributions ( Array< double >  classMeans,
Array< double >  classSigmas 
)

Set Mean and Sigma for the normal distributions

Warning:
This method MUST be called before any attemp to evaluate the Function because it instantiate the internal energy function
void itk::Object::InvokeEvent ( const EventObject &   )  [inherited]

Call Execute on all the Commands observing this event id.

void itk::Object::InvokeEvent ( const EventObject &   )  const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

virtual void itk::Object::Modified (  )  const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, TFilter >, itk::GrayscaleDilateImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleErodeImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalClosingImageFilter< TInputImage, TOutputImage, TKernel >, itk::GrayscaleMorphologicalOpeningImageFilter< TInputImage, TOutputImage, TKernel >, itk::MorphologicalGradientImageFilter< TInputImage, TOutputImage, TKernel >, itk::ImageAdaptor< TImage, Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< VectorImage< TPixelType, Dimension >, Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, Accessor::AddPixelAccessor< TImage::PixelType > >, and itk::MiniPipelineSeparableImageFilter< TInputImage, TOutputImage, RankImageFilter< TInputImage, TInputImage, FlatStructuringElement< ::itk::GetImageDimension< TInputImage >::ImageDimension > > >.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

template<class TImage , class TImageMask , class TBiasField >
static Pointer itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::New (  )  [static]

Method for creation through the object factory.

Reimplemented from itk::Object.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const [inherited]

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

bool itk::Object::PrintObservers ( std::ostream &  os,
Indent  indent 
) const [protected, inherited]
void itk::CostFunction::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

Reimplemented in itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::EuclideanDistancePointMetric< TFixedPointSet, TMovingPointSet, TDistanceMap >, itk::GradientDifferenceImageToImageMetric< TFixedImage, TMovingImage >, itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::ImageToImageMetric< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectMetric< TFixedImage, TMovingSpatialObject >, itk::KappaStatisticImageToImageMetric< TFixedImage, TMovingImage >, itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >, itk::MatchCardinalityImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::MeanReciprocalSquareDifferenceImageToImageMetric< TFixedImage, TMovingImage >, itk::MeanReciprocalSquareDifferencePointSetToImageMetric< TFixedPointSet, TMovingImage >, itk::MutualInformationImageToImageMetric< TFixedImage, TMovingImage >, itk::NormalizedCorrelationImageToImageMetric< TFixedImage, TMovingImage >, itk::NormalizedCorrelationPointSetToImageMetric< TFixedPointSet, TMovingImage >, itk::PointSetToImageMetric< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetMetric< TFixedPointSet, TMovingPointSet >, itk::ShapePriorMAPCostFunction< TFeatureImage, TOutputPixel >, itk::ShapePriorMAPCostFunctionBase< TFeatureImage, TOutputPixel >, itk::CumulativeGaussianCostFunction, itk::Statistics::GoodnessOfFitMixtureModelCostFunction< TInputSample >, itk::ImageToImageMetric< TFixedImage, TMovingImage >, itk::MatchCardinalityImageToImageMetric< TFixedImage, TMovingImage >, itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >, and itk::MeanSquaresImageToImageMetric< TFixedImage, TMovingImage >.

virtual void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

virtual void itk::Object::Register (  )  const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers (  )  [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long  tag  )  [inherited]

Remove the observer with this tag value.

template<class TImage , class TImageMask , class TBiasField >
void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SetBiasField ( BiasFieldType *  bias  )  [inline]

Sets the BiasField object.

Definition at line 104 of file itkMRIBiasFieldCorrectionFilter.h.

void itk::Object::SetDebug ( bool  debugFlag  )  const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

static void itk::Object::SetGlobalWarningDisplay ( bool  flag  )  [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

template<class TImage , class TImageMask , class TBiasField >
virtual void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SetImage ( ImageType *  _arg  )  [virtual]

Specify the input image.

template<class TImage , class TImageMask , class TBiasField >
virtual void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SetMask ( MaskType *  _arg  )  [virtual]

Specify the input mask image.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary &  rhs  )  [inherited]
Returns:
Set the MetaDataDictionary
virtual void itk::Object::SetReferenceCount ( int   )  [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

template<class TImage , class TImageMask , class TBiasField >
virtual void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SetRegion ( ImageRegionType  _arg  )  [virtual]

Set the image region which will be included for energy calculation.

template<class TImage , class TImageMask , class TBiasField >
void itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SetSamplingFactors ( SamplingFactorType  factor  )  [inline]

Sets the sampling factors of the energy function in each direction. Default is 1 in each dimension

Definition at line 109 of file itkMRIBiasFieldCorrectionFilter.h.

References itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SpaceDimension.

virtual void itk::Object::UnRegister (  )  const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

Member Data Documentation

InternalReferenceCountType itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 144 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 147 of file itkLightObject.h.

template<class TImage , class TImageMask , class TBiasField >
const unsigned int itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SpaceDimension = 3 [static]

Definition at line 86 of file itkMRIBiasFieldCorrectionFilter.h.

Referenced by itk::MRIBiasEnergyFunction< TImage, TImageMask, TBiasField >::SetSamplingFactors().

The documentation for this class was generated from the following file:
Generated at Tue Jul 13 2010 00:24:06 for ITK by doxygen 1.7.1 written by Dimitri van Heesch, © 1997-2000