Converts pixel data into a list of pairs in order to compute a cooccurrence Histogram. More...

#include <itkImageToCooccurrenceListAdaptor.h>

Inheritance diagram for itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >:

Collaboration diagram for itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >:

Public Types
typedef MeasurementVectorTraits::AbsoluteFrequencyType	AbsoluteFrequencyType
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::FrequencyType	FrequencyType
typedef ImageType::ConstPointer	ImageConstPointer
typedef ImageType::Pointer	ImagePointer
typedef TImage	ImageType
typedef ImageType::IndexType	IndexType
typedef Superclass::InstanceIdentifier	InstanceIdentifier
typedef ImageRegionIterator < ImageType >	IteratorType
typedef Superclass::MeasurementType	MeasurementType
typedef SampleType::MeasurementVectorSizeType	MeasurementVectorSizeType
typedef FixedArray< typename TImage::PixelType, 2 >	MeasurementVectorType
typedef std::vector< OffsetType >	OffsetTable
typedef ShapedNeighborhoodIteratorType::OffsetType	OffsetType
typedef ImageType::PixelContainerConstPointer	PixelContainerConstPointer
typedef PixelTraits< typename TImage::PixelType >	PixelTraitsType
typedef Superclass::PixelType	PixelType
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< Self >	Pointer
typedef itk::Statistics::ListSample < MeasurementVectorType >	SampleType
typedef std::vector < InstanceIdentifier >	SearchResultVectorType
typedef DataObject	Self
typedef ImageToCooccurrenceListAdaptor	Self
typedef itk::ShapedNeighborhoodIterator < TImage, ConstantBoundaryCondition < TImage > >	ShapedNeighborhoodIteratorType
typedef Object	Superclass
typedef ImageToListAdaptor < TImage, MeasurementVectorType >	Superclass
typedef NumericTraits < AbsoluteFrequencyType > ::AccumulateType	TotalAbsoluteFrequencyType
typedef Superclass::TotalFrequencyType	TotalFrequencyType
typedef MeasurementVectorType	ValueType
Public Member Functions
Iterator	Begin ()
ConstIterator	Begin () const
void	Compute ()
virtual void	CopyInformation (const DataObject *)
virtual LightObject::Pointer	CreateAnother () const
void	DataHasBeenGenerated ()
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
void	DisconnectPipeline ()
ConstIterator	End () const
Iterator	End ()
Command *	GetCommand (unsigned long tag)
Command *	GetCommand (unsigned long tag)
bool	GetDataReleased () const
bool	GetDebug () const
bool	GetDebug () const
virtual AbsoluteFrequencyType	GetFrequency (InstanceIdentifier id) const =0
FrequencyType	GetFrequency (const InstanceIdentifier &id) const
virtual FrequencyType	GetFrequency (const InstanceIdentifier &id) const =0
const TImage *	GetImage () const
virtual const MeasurementVectorType &	GetMeasurementVector (const InstanceIdentifier &id) const
virtual const MeasurementVectorType &	GetMeasurementVector (InstanceIdentifier id) const =0
virtual const MeasurementVectorType &	GetMeasurementVector (const InstanceIdentifier &id) const =0
unsigned int	GetMeasurementVectorSize () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
virtual const char *	GetNameOfClass () const
virtual int	GetReferenceCount () const
SmartPointerForwardReference < ProcessObject >	GetSource () const
unsigned int	GetSourceOutputIndex () const
TotalFrequencyType	GetTotalFrequency () const
virtual unsigned long	GetUpdateMTime () const
virtual void	Graft (const DataObject *thatObject)
virtual void	Graft (const DataObject *)
bool	HasObserver (const EventObject &event) const
bool	HasObserver (const EventObject &event) const
virtual void	Initialize ()
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	PrepareForNewData ()
void	Print (std::ostream &os, Indent indent=0) const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Register () const
void	ReleaseData ()
void	RemoveAllObservers ()
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	RemoveObserver (unsigned long tag)
virtual bool	RequestedRegionIsOutsideOfTheBufferedRegion ()
virtual void	ResetPipeline ()
void	Search (MeasurementVectorType center, double radius, SearchResultVectorType &result) const
void	SetDebug (bool debugFlag) const
void	SetDebug (bool debugFlag) const
void	SetImage (const TImage *image)
virtual void	SetMeasurementVectorSize (const MeasurementVectorSizeType s)
virtual void	SetMeasurementVectorSize (const MeasurementVectorSizeType)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
virtual void	SetRequestedRegion (DataObject *)
virtual void	SetRequestedRegionToLargestPossibleRegion ()
bool	ShouldIReleaseData () const
unsigned int	Size () const
virtual void	UnRegister () const
virtual void	Update ()
virtual void	UpdateOutputInformation ()
void	UseNeighbor (const OffsetType &offset)
virtual bool	VerifyRequestedRegion ()


virtual void	SetMeasurementVectorSize (const MeasurementVectorSizeType s)


void	SetReleaseDataFlag (bool flag)
virtual const bool &	GetReleaseDataFlag ()
virtual void	ReleaseDataFlagOn ()
virtual void	ReleaseDataFlagOff ()


virtual void	PropagateRequestedRegion () throw (InvalidRequestedRegionError)
virtual void	UpdateOutputData ()


void	SetPipelineMTime (unsigned long time)
virtual const unsigned long &	GetPipelineMTime ()


unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
Static Public Member Functions
static void	BreakOnError ()
static void	BreakOnError ()
static Pointer	New ()


static void	SetGlobalReleaseDataFlag (bool val)
static bool	GetGlobalReleaseDataFlag ()
static void	GlobalReleaseDataFlagOn ()
static void	GlobalReleaseDataFlagOff ()


static void	SetGlobalWarningDisplay (bool flag)
static void	SetGlobalWarningDisplay (bool flag)
static bool	GetGlobalWarningDisplay ()
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOff ()
Static Public Attributes
static const unsigned int	ImageDimension = TImage::ImageDimension
static const unsigned int	MeasurementVectorSize = 2
Protected Types


typedef int	InternalReferenceCountType
typedef int	InternalReferenceCountType
Protected Member Functions
virtual const IndexType &	GetImageBeginIndex ()
virtual const IndexType &	GetImageEndIndex ()
virtual const PixelContainerConstPointer &	GetPixelContainer ()
virtual const bool &	GetUseBuffer ()
	ImageToCooccurrenceListAdaptor ()
bool	PrintObservers (std::ostream &os, Indent indent) const
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	PropagateResetPipeline ()
virtual	~ImageToCooccurrenceListAdaptor ()


virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
Protected Attributes
InternalReferenceCountType	m_ReferenceCount
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock
SimpleFastMutexLock	m_ReferenceCountLock

Detailed Description

template<class TImage>
class itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >

Converts pixel data into a list of pairs in order to compute a cooccurrence Histogram.

This class is intended to be used in combination with the ListToHistogramGenerator class.

Author:: Glenn Pierce

Definition at line 54 of file itkImageToCooccurrenceListAdaptor.h.

Member Typedef Documentation

typedef MeasurementVectorTraits::AbsoluteFrequencyType itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::AbsoluteFrequencyType [inherited]

Frequency value type

Definition at line 84 of file Review/Statistics/itkSample.h.

typedef SmartPointer<const Self> itk::DataObject::ConstPointer [inherited]

Reimplemented from itk::Object.

Definition at line 269 of file itkDataObject.h.

template<class TImage >

typedef SmartPointer<const Self> itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::ConstPointer

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 71 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef Superclass::FrequencyType itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::FrequencyType

Frequency value type

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 113 of file itkImageToCooccurrenceListAdaptor.h.

typedef ImageType::ConstPointer itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::ImageConstPointer [inherited]

Definition at line 84 of file itkImageToListAdaptor.h.

typedef ImageType::Pointer itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::ImagePointer [inherited]

Definition at line 83 of file itkImageToListAdaptor.h.

template<class TImage >

typedef TImage itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::ImageType

Image typedefs

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 60 of file itkImageToCooccurrenceListAdaptor.h.

typedef ImageType::IndexType itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::IndexType [inherited]

Definition at line 85 of file itkImageToListAdaptor.h.

template<class TImage >

typedef Superclass::InstanceIdentifier itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::InstanceIdentifier

InstanceIdentifier typedef. This identifier is a unique sequential id for each measurement vector in a Sample subclass.

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 115 of file itkImageToCooccurrenceListAdaptor.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

typedef ImageRegionIterator< ImageType > itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::IteratorType [inherited]

Image Iterator typedef support

Definition at line 92 of file itkImageToListAdaptor.h.

template<class TImage >

typedef Superclass::MeasurementType itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::MeasurementType

Superclass typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 114 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef SampleType::MeasurementVectorSizeType itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::MeasurementVectorSizeType

Typedef for the length of each measurement vector

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 65 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef FixedArray< typename TImage::PixelType, 2 > itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::MeasurementVectorType

Typedefs inherited from the superclass

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 62 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef std::vector<OffsetType> itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::OffsetTable

Definition at line 81 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef ShapedNeighborhoodIteratorType::OffsetType itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::OffsetType

Offset type used for Neighborhoods

Definition at line 80 of file itkImageToCooccurrenceListAdaptor.h.

typedef ImageType::PixelContainerConstPointer itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::PixelContainerConstPointer [inherited]

Definition at line 87 of file itkImageToListAdaptor.h.

typedef PixelTraits< typename TImage::PixelType > itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::PixelTraitsType [inherited]

Definition at line 93 of file itkImageToListAdaptor.h.

template<class TImage >

typedef Superclass::PixelType itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::PixelType

Superclass typedefs for Measurement vector, measurement, Instance Identifier, frequency, size, size element value

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 112 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef SmartPointer< Self > itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::Pointer

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 70 of file itkImageToCooccurrenceListAdaptor.h.

typedef SmartPointer<Self> itk::DataObject::Pointer [inherited]

Reimplemented from itk::Object.

Definition at line 268 of file itkDataObject.h.

template<class TImage >

typedef itk::Statistics::ListSample< MeasurementVectorType > itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::SampleType

Definition at line 64 of file itkImageToCooccurrenceListAdaptor.h.

typedef std::vector< InstanceIdentifier > itk::Statistics::ListSampleBase< FixedArray< TImage::PixelType, 2 > >::SearchResultVectorType [inherited]

Vector of InstanceIdentifiers used for returning search results.

Definition at line 69 of file itkListSampleBase.h.

template<class TImage >

typedef ImageToCooccurrenceListAdaptor itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::Self

Standard class typedefs

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 68 of file itkImageToCooccurrenceListAdaptor.h.

typedef DataObject itk::DataObject::Self [inherited]

Standard class typedefs.

Reimplemented from itk::Object.

Definition at line 266 of file itkDataObject.h.

template<class TImage >

typedef itk::ShapedNeighborhoodIterator< TImage , ConstantBoundaryCondition<TImage> > itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::ShapedNeighborhoodIteratorType

Neighborhood iterator type.

Definition at line 77 of file itkImageToCooccurrenceListAdaptor.h.

template<class TImage >

typedef ImageToListAdaptor< TImage, MeasurementVectorType > itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::Superclass

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 69 of file itkImageToCooccurrenceListAdaptor.h.

typedef Object itk::DataObject::Superclass [inherited]

Reimplemented from itk::Object.

Definition at line 267 of file itkDataObject.h.

typedef NumericTraits<AbsoluteFrequencyType>::AccumulateType itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::TotalAbsoluteFrequencyType [inherited]

Total frequency type

Definition at line 87 of file Review/Statistics/itkSample.h.

typedef Superclass::TotalFrequencyType itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::TotalFrequencyType [inherited]

Total frequency type

Reimplemented from itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >.

Definition at line 99 of file itkImageToListAdaptor.h.

template<class TImage >

typedef MeasurementVectorType itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::ValueType

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 116 of file itkImageToCooccurrenceListAdaptor.h.

Constructor & Destructor Documentation

template<class TImage >

itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::ImageToCooccurrenceListAdaptor ( ) [protected]

template<class TImage >

virtual itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::~ImageToCooccurrenceListAdaptor ( ) [inline, protected, virtual]

Definition at line 125 of file itkImageToCooccurrenceListAdaptor.h.

Member Function Documentation

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			`[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			const `[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			`[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			const `[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

Iterator itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::Begin ( void ) [inline, inherited]

Definition at line 264 of file itkImageToListAdaptor.h.

ConstIterator itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::Begin ( void ) const [inline, inherited]

Definition at line 276 of file itkImageToListAdaptor.h.

static void itk::LightObject::BreakOnError ( ) [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

static void itk::LightObject::BreakOnError ( ) [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

template<class TImage >

void itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::Compute ( )

Triggers the Computation of the co-occurence matrix

virtual void itk::DataObject::CopyInformation ( const DataObject * ) [inline, virtual, inherited]

Copy information from the specified data set. This method is part of the pipeline execution model. By default, a ProcessObject will copy meta-data from the first input to all of its outputs. See ProcessObject::GenerateOutputInformation(). Each subclass of DataObject is responsible for being able to copy whatever meta-data it needs from from another DataObject. The default implementation of this method is empty. If a subclass overrides this method, it should always call its superclass' version.

Definition at line 439 of file itkDataObject.h.

virtual LightObject::Pointer itk::Object::CreateAnother ( ) const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

void itk::DataObject::DataHasBeenGenerated ( ) [inherited]

Inform the pipeline mechanism that data has been generated. This method is called by ProcessObject::UpdateOutputData() once the process object has finished generating its data. This essentially marks the DataObject as being updated and ready for use.

virtual void itk::Object::DebugOff ( ) const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn ( ) const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete ( ) [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

void itk::DataObject::DisconnectPipeline ( ) [inherited]

Separate this data object from the pipeline. This routine disconnects a data object from the upstream pipeline. Hence an Update() from downstream will not propagate back past this data object. To completely isolate this data object from the pipeline, the application must remove this data object from any filters which it is connected as the input.

Iterator itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::End ( void ) [inline, inherited]

Definition at line 270 of file itkImageToListAdaptor.h.

ConstIterator itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::End ( void ) const [inline, inherited]

Definition at line 282 of file itkImageToListAdaptor.h.

Command* itk::Object::GetCommand ( unsigned long tag ) [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

Command* itk::Object::GetCommand ( unsigned long tag ) [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::DataObject::GetDataReleased ( ) const [inline, inherited]

Get the flag indicating the data has been released.

Definition at line 334 of file itkDataObject.h.

bool itk::Object::GetDebug ( ) const [inherited]

Get the value of the debug flag.

bool itk::Object::GetDebug ( ) const [inherited]

Get the value of the debug flag.

virtual FrequencyType itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::GetFrequency ( const InstanceIdentifier & id ) const [pure virtual, inherited]

Get the frequency of a measurement specified by instance identifier.

virtual AbsoluteFrequencyType itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::GetFrequency ( InstanceIdentifier id ) const [pure virtual, inherited]

Get the frequency of a measurement specified by instance identifier.

FrequencyType itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetFrequency ( const InstanceIdentifier & id ) const [inline, inherited]

static bool itk::DataObject::GetGlobalReleaseDataFlag ( ) [static, inherited]

Turn on/off a flag to control whether every object releases its data after being used by a filter. Being a global flag, it controls the behavior of all DataObjects and ProcessObjects.

static bool itk::Object::GetGlobalWarningDisplay ( ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

static bool itk::Object::GetGlobalWarningDisplay ( ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

const TImage* itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetImage ( void ) const [inherited]

Method to get the image

virtual const IndexType& itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetImageBeginIndex ( ) [protected, virtual, inherited]

virtual const IndexType& itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetImageEndIndex ( ) [protected, virtual, inherited]

virtual const MeasurementVectorType& itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::GetMeasurementVector ( InstanceIdentifier id ) const [pure virtual, inherited]

Get the measurement associated with a particular InstanceIdentifier.

virtual const MeasurementVectorType& itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetMeasurementVector ( const InstanceIdentifier & id ) const [inline, virtual, inherited]

virtual const MeasurementVectorType& itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::GetMeasurementVector ( const InstanceIdentifier & id ) const [pure virtual, inherited]

Get the measurement associated with a particular InstanceIdentifier.

template<class TImage >

unsigned int itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::GetMeasurementVectorSize ( ) const [inline, virtual]

Set/Get macros for the length of the measurement vector

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

Definition at line 105 of file itkImageToCooccurrenceListAdaptor.h.

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) const [inherited]

Returns:: A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) [inherited]

Returns:: A reference to this objects MetaDataDictionary.

Warning:: This reference may be changed.

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) const [inherited]

Returns:: A constant reference to this objects MetaDataDictionary.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) [inherited]

Returns:: A reference to this objects MetaDataDictionary.

Warning:: This reference may be changed.

virtual unsigned long itk::Object::GetMTime ( ) const [virtual, inherited]

Return this objects modified time.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

virtual const char* itk::DataObject::GetNameOfClass ( ) const [virtual, inherited]

Run-time type information (and related methods).

Reimplemented from itk::Object.

template<class TImage >

virtual const char* itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

virtual const unsigned long& itk::DataObject::GetPipelineMTime ( ) [virtual, inherited]

The maximum MTime of all upstream filters and data objects. This does not include the MTime of this data object.

virtual const PixelContainerConstPointer& itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetPixelContainer ( ) [protected, virtual, inherited]

virtual int itk::LightObject::GetReferenceCount ( ) const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

virtual const bool& itk::DataObject::GetReleaseDataFlag ( ) [virtual, inherited]

Turn on/off a flag to control whether this object's data is released after being used by a filter.

SmartPointerForwardReference<ProcessObject> itk::DataObject::GetSource ( ) const [inherited]

Get the process object that generated this data object. If there is no process object, then the data object has been disconnected from the pipeline, or the data object was created manually. (Note: we cannot use the GetObjectMacro() defined in itkMacro because the mutual dependency of DataObject and ProcessObject causes compile problems. Also, a forward reference smart pointer is returned, not a smart pointer, because of the circular dependency between the process and data object.)

GetSource() returns a SmartPointerForwardReference and not a WeakPointer because it is assumed the code calling GetSource() wants to hold a long term reference to the source.

unsigned int itk::DataObject::GetSourceOutputIndex ( ) const [inherited]

Which of the source's outputs corresponds to this data object?

TotalFrequencyType itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetTotalFrequency ( ) const [virtual, inherited]

Get the total frequency of the sample.

Implements itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >.

virtual unsigned long itk::DataObject::GetUpdateMTime ( ) const [virtual, inherited]

MTime for the last time this DataObject was generated.

virtual const bool& itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::GetUseBuffer ( ) [protected, virtual, inherited]

static void itk::DataObject::GlobalReleaseDataFlagOff ( ) [inline, static, inherited]

Turn on/off a flag to control whether every object releases its data after being used by a filter. Being a global flag, it controls the behavior of all DataObjects and ProcessObjects.

Definition at line 319 of file itkDataObject.h.

static void itk::DataObject::GlobalReleaseDataFlagOn ( ) [inline, static, inherited]

Turn on/off a flag to control whether every object releases its data after being used by a filter. Being a global flag, it controls the behavior of all DataObjects and ProcessObjects.

Definition at line 317 of file itkDataObject.h.

static void itk::Object::GlobalWarningDisplayOff ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOff ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

virtual void itk::DataObject::Graft ( const DataObject * ) [inline, virtual, inherited]

Method for grafting the content of one data object into another one. This method is intended to be overloaded by derived classes. Each one of them should use dynamic_casting in order to verify that the grafted object is actually of the same type as the class on which the Graft() method was invoked.

Definition at line 453 of file itkDataObject.h.

virtual void itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::Graft ( const DataObject * thatObject ) [inline, virtual, inherited]

Method to graft another sample

Definition at line 161 of file Review/Statistics/itkSample.h.

bool itk::Object::HasObserver ( const EventObject & event ) const [inherited]

Return true if an observer is registered for this event.

bool itk::Object::HasObserver ( const EventObject & event ) const [inherited]

Return true if an observer is registered for this event.

virtual void itk::DataObject::Initialize ( ) [virtual, inherited]

Restore the data object to its initial state. This means releasing memory.

void itk::Object::InvokeEvent ( const EventObject & ) const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

void itk::Object::InvokeEvent ( const EventObject & ) [inherited]

Call Execute on all the Commands observing this event id.

void itk::Object::InvokeEvent ( const EventObject & ) [inherited]

Call Execute on all the Commands observing this event id.

void itk::Object::InvokeEvent ( const EventObject & ) const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

virtual void itk::Object::Modified ( ) const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

template<class TImage >

static Pointer itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

virtual void itk::DataObject::PrepareForNewData ( ) [inline, virtual, inherited]

Setup a DataObject to receive new data. This method is called by the pipeline mechanism on each output of filter that needs to execute. The default implementation is to return a DataObject to its initial state. This may involve releasing previously allocated bulk data. Subclasses of DataObject may want to override this method and/or the Initialize() method if they want a different default behavior (for instance a DataObject might want finer control over its bulk data memory management).

Definition at line 389 of file itkDataObject.h.

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)			const `[inherited]`

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)			const `[inherited]`

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, inherited]`

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, inherited]`

template<class TImage >

void itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >.

void itk::DataObject::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

virtual void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

virtual void itk::DataObject::PropagateRequestedRegion ( ) throw (InvalidRequestedRegionError) [virtual, inherited]

Methods to update the pipeline. Called internally by the pipeline mechanism.

virtual void itk::DataObject::PropagateResetPipeline ( ) [protected, virtual, inherited]

Propagate a call to ResetPipeline(). Called only from ProcessObject.

virtual void itk::Object::Register ( ) const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::DataObject::ReleaseData ( ) [inherited]

Release data back to system to conserve memory resource. Used during pipeline execution. Releasing this data does not make down-stream data invalid, so it does not modify the MTime of this data object.

virtual void itk::DataObject::ReleaseDataFlagOff ( ) [virtual, inherited]

Turn on/off a flag to control whether this object's data is released after being used by a filter.

virtual void itk::DataObject::ReleaseDataFlagOn ( ) [virtual, inherited]

Turn on/off a flag to control whether this object's data is released after being used by a filter.

void itk::Object::RemoveAllObservers ( ) [inherited]

Remove all observers .

void itk::Object::RemoveAllObservers ( ) [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long tag ) [inherited]

Remove the observer with this tag value.

void itk::Object::RemoveObserver ( unsigned long tag ) [inherited]

Remove the observer with this tag value.

virtual bool itk::DataObject::RequestedRegionIsOutsideOfTheBufferedRegion ( ) [inline, virtual, inherited]

Determine whether the RequestedRegion is outside of the BufferedRegion. This method returns true if the RequestedRegion is outside the BufferedRegion (true if at least one pixel is outside). This is used by the pipeline mechanism to determine whether a filter needs to re-execute in order to satisfy the current request. If the current RequestedRegion is already inside the BufferedRegion from the previous execution (and the current filter is up to date), then a given filter does not need to re-execute

Reimplemented in itk::ImageBase< VImageDimension >, itk::PointSet< TPixelType, VDimension, TMeshTraits >, itk::QuadEdgeMesh< TPixel, VDimension, TTraits >, itk::SpatialObject< TDimension >, itk::ImageBase< ::itk::GetImageDimension< TLabelObject >::ImageDimension >, itk::ImageBase< ::itk::GetImageDimension< VectorImage< TPixelType, Dimension > >::ImageDimension >, itk::ImageBase< ::itk::GetImageDimension< TImage >::ImageDimension >, itk::PointSet< TPixel, VDimension, TTraits >, itk::PointSet< TCoordType, VDimension, DefaultDynamicMeshTraits< TCoordType, 2, 2, TCoordType > >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.

Definition at line 413 of file itkDataObject.h.

virtual void itk::DataObject::ResetPipeline ( ) [virtual, inherited]

Reset the pipeline. If an exception is thrown during an Update(), the pipeline may be in an inconsistent state. This method clears the internal state of the pipeline so Update() can be called.

void itk::Statistics::ListSampleBase< FixedArray< TImage::PixelType, 2 > >::Search	(	MeasurementVectorType	center,
		double	radius,
		SearchResultVectorType &	result
	)			const `[inline, inherited]`

Search for measurements within the specified radius of a search point. A vector of InstanceIdentifiers is returned.

Definition at line 73 of file itkListSampleBase.h.

void itk::Object::SetDebug ( bool debugFlag ) const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

void itk::Object::SetDebug ( bool debugFlag ) const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

static void itk::DataObject::SetGlobalReleaseDataFlag ( bool val ) [static, inherited]

Turn on/off a flag to control whether every object releases its data after being used by a filter. Being a global flag, it controls the behavior of all DataObjects and ProcessObjects.

static void itk::Object::SetGlobalWarningDisplay ( bool flag ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

static void itk::Object::SetGlobalWarningDisplay ( bool flag ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::SetImage ( const TImage * image ) [inherited]

Method to set the image

virtual void itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >::SetMeasurementVectorSize ( const MeasurementVectorSizeType s ) [inline, virtual, inherited]

Set/Get macros for the length of the measurement vector

Definition at line 113 of file Numerics/Statistics/itkSample.h.

template<class TImage >

virtual void itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::SetMeasurementVectorSize ( const MeasurementVectorSizeType ) [inline, virtual]

Definition at line 97 of file itkImageToCooccurrenceListAdaptor.h.

References itkWarningMacro.

virtual void itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::SetMeasurementVectorSize ( const MeasurementVectorSizeType s ) [inline, virtual, inherited]

Definition at line 106 of file itkImageToListAdaptor.h.

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs ) [inherited]

Returns:: Set the MetaDataDictionary

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs ) [inherited]

Returns:: Set the MetaDataDictionary

void itk::DataObject::SetPipelineMTime ( unsigned long time ) [inline, inherited]

The maximum MTime of all upstream filters and data objects. This does not include the MTime of this data object.

Definition at line 373 of file itkDataObject.h.

virtual void itk::Object::SetReferenceCount ( int ) [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

void itk::DataObject::SetReleaseDataFlag ( bool flag ) [inline, inherited]

Turn on/off a flag to control whether this object's data is released after being used by a filter.

Definition at line 304 of file itkDataObject.h.

virtual void itk::DataObject::SetRequestedRegion ( DataObject * ) [inline, virtual, inherited]

Set the requested region from this data object to match the requested region of the data object passed in as a parameter. For DataObject's that do not support Regions, this method does nothing. Subclasses of DataObject that do support Regions, provide an alternative implementation.

Definition at line 446 of file itkDataObject.h.

virtual void itk::DataObject::SetRequestedRegionToLargestPossibleRegion ( ) [inline, virtual, inherited]

Set the RequestedRegion to the LargestPossibleRegion. This forces a filter to produce all of the output in one execution (i.e. not streaming) on the next call to Update().

Definition at line 402 of file itkDataObject.h.

bool itk::DataObject::ShouldIReleaseData ( ) const [inherited]

Return flag indicating whether data should be released after use by a filter.

unsigned int itk::Statistics::ImageToListAdaptor< TImage, FixedArray< TImage::PixelType, 2 > >::Size ( void ) const [virtual, inherited]

returns the number of measurement vectors in this container

Implements itk::Statistics::Sample< FixedArray< TImage::PixelType, 2 > >.

virtual void itk::Object::UnRegister ( ) const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

virtual void itk::DataObject::Update ( ) [virtual, inherited]

Provides opportunity for the data object to insure internal consistency before access. Also causes owning source/filter (if any) to update itself. The Update() method is composed of UpdateOutputInformation(), PropagateRequestedRegion(), and UpdateOutputData(). This method may call methods that throw an InvalidRequestedRegionError exception. This exception will leave the pipeline in an inconsistent state. You will need to call ResetPipeline() on the last ProcessObject in your pipeline in order to restore the pipeline to a state where you can call Update() again.

virtual void itk::DataObject::UpdateOutputData ( ) [virtual, inherited]

Methods to update the pipeline. Called internally by the pipeline mechanism.

virtual void itk::DataObject::UpdateOutputInformation ( ) [virtual, inherited]

Update the information for this DataObject so that it can be used as an output of a ProcessObject. This method is used in the pipeline mechanism to propagate information and initialize the meta data associated with a DataObject. Any implementation of this method in a derived class is assumed to call its source's ProcessObject::UpdateOutputInformation() which determines modified times, LargestPossibleRegions, and any extra meta data like spacing, origin, etc. Default implementation simply call's it's source's UpdateOutputInformation().

template<class TImage >

void itk::Statistics::ImageToCooccurrenceListAdaptor< TImage >::UseNeighbor ( const OffsetType & offset )

virtual bool itk::DataObject::VerifyRequestedRegion ( ) [inline, virtual, inherited]

Verify that the RequestedRegion is within the LargestPossibleRegion.

If the RequestedRegion is not within the LargestPossibleRegion, then the filter cannot possibly satisfy the request. This method returns true if the request can be satisfied (even if it will be necessary to process the entire LargestPossibleRegion) and returns false otherwise. This method is used by PropagateRequestedRegion(). PropagateRequestedRegion() throws a InvalidRequestedRegionError exception if the requested region is not within the LargestPossibleRegion. Default implementation simply returns true in order to support DataObjects that do not need regions (for instance itk::EquivalencyTable).