Abstract superclass defining the Transform IO interface. More...

#include <itkTransformIOBase.h>

Inheritance diagram for itk::TransformIOBase:

Collaboration diagram for itk::TransformIOBase:

Public Types
typedef SmartPointer< const Self >	ConstPointer
typedef std::list < ConstTransformPointer >	ConstTransformListType
typedef TransformType::ConstPointer	ConstTransformPointer
typedef SmartPointer< Self >	Pointer
typedef TransformIOBase	Self
typedef LightProcessObject	Superclass
typedef std::list < TransformPointer >	TransformListType
typedef TransformType::Pointer	TransformPointer
typedef TransformBase	TransformType
Public Member Functions
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual bool	CanReadFile (const char *)=0
virtual bool	CanWriteFile (const char *)=0
virtual LightObject::Pointer	CreateAnother () const
virtual void	DebugOff () const
virtual void	DebugOn () const
virtual void	Delete ()
virtual const bool &	GetAbortGenerateData ()
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary (void)
const MetaDataDictionary &	GetMetaDataDictionary (void) const
virtual unsigned long	GetMTime () const
virtual const char *	GetNameOfClass () const
virtual int	GetReferenceCount () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Print (std::ostream &os, Indent indent=0) const
virtual void	Read ()=0
virtual void	Register () const
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
virtual void	SetAbortGenerateData (bool _arg)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int)
void	SetTransformList (ConstTransformListType &transformList)
virtual void	UnRegister () const
virtual void	UpdateOutputData ()
void	UpdateProgress (float amount)
virtual void	Write ()=0


virtual void	SetFileName (const char *_arg)
virtual const char *	GetFileName () const


TransformListType &	GetTransformList ()
TransformListType &	GetReadTransformList ()
ConstTransformListType &	GetWriteTransformList ()


virtual void	SetAppendMode (bool _arg)
virtual bool	GetAppendMode () const
virtual void	AppendModeOn ()
virtual void	AppendModeOff ()


virtual void	SetProgress (float _arg)


virtual const float &	GetProgress ()


unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
Static Public Member Functions
static void	BreakOnError ()
static Pointer	New ()


static void	SetGlobalWarningDisplay (bool flag)
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
Protected Types


typedef int	InternalReferenceCountType
Protected Member Functions
void	CreateTransform (TransformPointer &ptr, const std::string &ClassName)
virtual void	GenerateData ()
void	OpenStream (std::ofstream &out, bool binary)
bool	PrintObservers (std::ostream &os, Indent indent) const
void	PrintSelf (std::ostream &os, Indent indent) const
	TransformIOBase ()
virtual	~TransformIOBase ()


virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
Protected Attributes
InternalReferenceCountType	m_ReferenceCount
SimpleFastMutexLock	m_ReferenceCountLock

Detailed Description

Abstract superclass defining the Transform IO interface.

TransformIOBase is a pure virtual base class for dervied classes that read/write transform data. It's used by the TransformFileReader and TransformFileWriter classes. End users don't directly manipulate classes derived from TransformIOBase; the TransformIOFactory is used by the Reader/Writer to pick a concrete derived class to do the actual reading/writing of transforms.

Definition at line 39 of file itkTransformIOBase.h.

Member Typedef Documentation

typedef SmartPointer<const Self> itk::LightProcessObject::ConstPointer [inherited]

Reimplemented from itk::Object.

Definition at line 78 of file itkLightProcessObject.h.

typedef std::list<ConstTransformPointer> itk::TransformIOBase::ConstTransformListType

Definition at line 59 of file itkTransformIOBase.h.

typedef TransformType::ConstPointer itk::TransformIOBase::ConstTransformPointer

Definition at line 58 of file itkTransformIOBase.h.

typedef int itk::LightObject::InternalReferenceCountType [protected, inherited]

Define the type of the reference count according to the target. This allows the use of atomic operations

Definition at line 139 of file itkLightObject.h.

typedef SmartPointer<Self> itk::TransformIOBase::Pointer

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

Definition at line 45 of file itkTransformIOBase.h.

typedef TransformIOBase itk::TransformIOBase::Self

Standard class typedefs

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

Definition at line 43 of file itkTransformIOBase.h.

typedef LightProcessObject itk::TransformIOBase::Superclass

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

Definition at line 44 of file itkTransformIOBase.h.

typedef std::list<TransformPointer> itk::TransformIOBase::TransformListType

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

Definition at line 57 of file itkTransformIOBase.h.

typedef TransformType::Pointer itk::TransformIOBase::TransformPointer

For writing, a const transform list gets passed in, for reading, a non-const transform list is created from the file.

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

Definition at line 56 of file itkTransformIOBase.h.

typedef TransformBase itk::TransformIOBase::TransformType

Transform types

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

Definition at line 48 of file itkTransformIOBase.h.

Constructor & Destructor Documentation

itk::TransformIOBase::TransformIOBase ( ) [protected]

virtual itk::TransformIOBase::~TransformIOBase ( ) [protected, virtual]

Member Function Documentation

virtual void itk::LightProcessObject::AbortGenerateDataOff ( ) [virtual, inherited]

virtual void itk::LightProcessObject::AbortGenerateDataOn ( ) [virtual, inherited]

Turn on and off the AbortGenerateData flag.

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			`[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

unsigned long itk::Object::AddObserver	(	const EventObject &	event,
		Command *
	)			const `[inherited]`

Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects

virtual void itk::TransformIOBase::AppendModeOff ( ) [virtual]

Set the writer to append to the specified file

virtual void itk::TransformIOBase::AppendModeOn ( ) [virtual]

Set the writer to append to the specified file

static void itk::LightObject::BreakOnError ( ) [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

virtual bool itk::TransformIOBase::CanReadFile ( const char * ) [pure virtual]

Determine the file type. Returns true if this TransformIO can read the file specified.

Implemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

virtual bool itk::TransformIOBase::CanWriteFile ( const char * ) [pure virtual]

Determine the file type. Returns true if this TransformIO can read the file specified.

Implemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

virtual LightObject::Pointer itk::Object::CreateAnother ( ) const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightObject.

void itk::TransformIOBase::CreateTransform	(	TransformPointer &	ptr,
		const std::string &	ClassName
	)			`[protected]`

virtual void itk::Object::DebugOff ( ) const [virtual, inherited]

Turn debugging output off.

virtual void itk::Object::DebugOn ( ) const [virtual, inherited]

Turn debugging output on.

virtual void itk::LightObject::Delete ( ) [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

virtual void itk::LightProcessObject::GenerateData ( void ) [inline, protected, virtual, inherited]

This method causes the filter to generate its output.

Reimplemented in itk::ClassifierBase< TDataContainer >, itk::ImageClassifierBase< TInputImage, TClassifiedImage >, itk::ImageGaussianModelEstimator< TInputImage, TMembershipFunction, TTrainingImage >, itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >, itk::ImageModelEstimatorBase< TInputImage, TMembershipFunction >, itk::LevelSetNeighborhoodExtractor< TLevelSet >, itk::Statistics::SampleClassifier< TSample >, itk::Statistics::SampleClassifierWithMask< TSample, TMaskSample >, itk::ClassifierBase< TInputImage >, and itk::ClassifierBase< TSample >.

Definition at line 123 of file itkLightProcessObject.h.

virtual const bool& itk::LightProcessObject::GetAbortGenerateData ( ) [virtual, inherited]

Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

virtual bool itk::TransformIOBase::GetAppendMode ( ) const [virtual]

Set the writer to append to the specified file

Command* itk::Object::GetCommand ( unsigned long tag ) [inherited]

Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.

bool itk::Object::GetDebug ( ) const [inherited]

Get the value of the debug flag.

virtual const char* itk::TransformIOBase::GetFileName ( ) const [virtual]

Set/Get the name of the file to be read.

static bool itk::Object::GetGlobalWarningDisplay ( ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) [inherited]

Returns:: A reference to this objects MetaDataDictionary.

Warning:: This reference may be changed.

const MetaDataDictionary& itk::Object::GetMetaDataDictionary ( void ) const [inherited]

Returns:: A constant reference to this objects MetaDataDictionary.

virtual unsigned long itk::Object::GetMTime ( ) const [virtual, inherited]

Return this objects modified time.

Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().

virtual const char* itk::TransformIOBase::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

virtual const float& itk::LightProcessObject::GetProgress ( ) [virtual, inherited]

Get the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

TransformListType& itk::TransformIOBase::GetReadTransformList ( ) [inline]

Get the list of transforms resulting from a file read

Definition at line 82 of file itkTransformIOBase.h.

virtual int itk::LightObject::GetReferenceCount ( ) const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 106 of file itkLightObject.h.

TransformListType& itk::TransformIOBase::GetTransformList ( ) [inline]

Get the list of transforms resulting from a file read

Definition at line 81 of file itkTransformIOBase.h.

ConstTransformListType& itk::TransformIOBase::GetWriteTransformList ( ) [inline]

Get the list of transforms resulting from a file read

Definition at line 83 of file itkTransformIOBase.h.

static void itk::Object::GlobalWarningDisplayOff ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 100 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

static void itk::Object::GlobalWarningDisplayOn ( ) [inline, static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Definition at line 98 of file itkObject.h.

References itk::Object::SetGlobalWarningDisplay().

bool itk::Object::HasObserver ( const EventObject & event ) const [inherited]

Return true if an observer is registered for this event.

void itk::Object::InvokeEvent ( const EventObject & ) [inherited]

Call Execute on all the Commands observing this event id.

void itk::Object::InvokeEvent ( const EventObject & ) const [inherited]

Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.

virtual void itk::Object::Modified ( ) const [virtual, inherited]

Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.

Referenced by itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().

static Pointer itk::LightProcessObject::New ( ) [static, inherited]

Method for creation through the object factory.

Reimplemented from itk::Object.

Reimplemented in itk::ImageClassifierBase< TInputImage, TClassifiedImage >, itk::ImageGaussianModelEstimator< TInputImage, TMembershipFunction, TTrainingImage >, itk::ImageKmeansModelEstimator< TInputImage, TMembershipFunction >, itk::LevelSetNeighborhoodExtractor< TLevelSet >, itk::LevelSetVelocityNeighborhoodExtractor< TLevelSet, TAuxValue, VAuxDimension >, itk::AnalyzeImageIO, itk::BioRadImageIO, itk::BMPImageIO, itk::Brains2MaskImageIO, itk::DicomImageIO, itk::DICOMImageIO2, itk::GDCMImageIO, itk::GE4ImageIO, itk::GE5ImageIO, itk::GEAdwImageIO, itk::GiplImageIO, itk::IPLCommonImageIO, itk::JPEGImageIO, itk::LSMImageIO, itk::MetaArrayReader, itk::MetaArrayWriter, itk::MetaImageIO, itk::NiftiImageIO, itk::NrrdImageIO, itk::PNGImageIO, itk::PolygonGroupSpatialObjectXMLFileReader, itk::PolygonGroupSpatialObjectXMLFileWriter, itk::RawImageIO< TPixel, VImageDimension >, itk::SiemensVisionImageIO, itk::StimulateImageIO, itk::TIFFImageIO, itk::TransformFileReader, itk::TransformFileWriter, itk::VTKImageIO, itk::Statistics::BackPropagationLayer< TMeasurementVector, TTargetVector >, itk::Statistics::BatchSupervisedTrainingFunction< TSample, TTargetVector, ScalarType >, itk::Statistics::CompletelyConnectedWeightSet< TMeasurementVector, TTargetVector >, itk::Statistics::ErrorBackPropagationLearningFunctionBase< LayerType, TTargetVector >, itk::Statistics::ErrorBackPropagationLearningWithMomentum< LayerType, TTargetVector >, itk::Statistics::IterativeSupervisedTrainingFunction< TSample, TTargetVector, ScalarType >, itk::Statistics::QuickPropLearningRule< LayerType, TTargetVector >, itk::Statistics::RBFBackPropagationLearningFunction< LayerType, TTargetVector >, itk::Statistics::RBFLayer< TMeasurementVector, TTargetVector >, itk::Statistics::TrainingFunctionBase< TSample, TTargetVector, ScalarType >, itk::Statistics::SampleClassifier< TSample >, itk::Statistics::SampleClassifierWithMask< TSample, TMaskSample >, itk::Bruker2DSEQImageIO, itk::MatlabTransformIO, itk::MINC2ImageIO, itk::MRCImageIO, itk::PhilipsPAR, itk::PhilipsRECImageIO, itk::TransformFileReader, itk::TransformFileWriter, itk::TxtTransformIO, itk::VoxBoCUBImageIO, and itk::VTKImageIO2.

void itk::TransformIOBase::OpenStream	(	std::ofstream &	out,
		bool	binary
	)			`[protected]`

void itk::LightObject::Print	(	std::ostream &	os,
		Indent	indent = `0`
	)			const `[inherited]`

Cause the object to print itself out.

Referenced by itk::WeakPointer< ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

bool itk::Object::PrintObservers	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, inherited]`

void itk::TransformIOBase::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LightProcessObject.

virtual void itk::LightObject::PrintTrailer	(	std::ostream &	os,
		Indent	indent
	)			const `[protected, virtual, inherited]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

virtual void itk::TransformIOBase::Read ( ) [pure virtual]

Reads the data from disk into the memory buffer provided.

Implemented in itk::MatlabTransformIO, and itk::TxtTransformIO.

virtual void itk::Object::Register ( ) const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented from itk::LightObject.

void itk::Object::RemoveAllObservers ( ) [inherited]

Remove all observers .

void itk::Object::RemoveObserver ( unsigned long tag ) [inherited]

Remove the observer with this tag value.

virtual void itk::LightProcessObject::SetAbortGenerateData ( bool _arg ) [virtual, inherited]

Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.

virtual void itk::TransformIOBase::SetAppendMode ( bool _arg ) [virtual]

Set the writer to append to the specified file

void itk::Object::SetDebug ( bool debugFlag ) const [inherited]

Set the value of the debug flag. A non-zero value turns debugging on.

virtual void itk::TransformIOBase::SetFileName ( const char * _arg ) [virtual]

Set/Get the name of the file to be read.

static void itk::Object::SetGlobalWarningDisplay ( bool flag ) [static, inherited]

This is a global flag that controls whether any debug, warning or error messages are displayed.

Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().

void itk::Object::SetMetaDataDictionary ( const MetaDataDictionary & rhs ) [inherited]

Returns:: Set the MetaDataDictionary

virtual void itk::LightProcessObject::SetProgress ( float _arg ) [virtual, inherited]

Set the execution progress of a process object. The progress is a floating number between (0,1), 0 meaning no progress; 1 meaning the filter has completed execution.

virtual void itk::Object::SetReferenceCount ( int ) [virtual, inherited]

Sets the reference count (use with care)

Reimplemented from itk::LightObject.

void itk::TransformIOBase::SetTransformList ( ConstTransformListType & transformList )

Set the list of transforms before writing

virtual void itk::Object::UnRegister ( ) const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented from itk::LightObject.

virtual void itk::LightProcessObject::UpdateOutputData ( ) [virtual, inherited]

Actually generate new output.

void itk::LightProcessObject::UpdateProgress ( float amount ) [inherited]

Update the progress of the process object. If a ProgressMethod exists, executes it. Then set the Progress ivar to amount. The parameter amount should range between (0,1).

virtual void itk::TransformIOBase::Write ( ) [pure virtual]

Writes the transform list to disk.

Implemented in itk::MatlabTransformIO, and itk::TxtTransformIO.