itk::bio::CellBase Class Reference

non-templated Base class from which the templated Cell classes will be derived. Derived classes are instantiated for a specific space dimension. More...

#include <itkBioCellBase.h>

Inheritance diagram for itk::bio::CellBase:

Collaboration diagram for itk::bio::CellBase:

List of all members.

Public Types
enum	CellCycleState {   M = 1UL,   Gap1,   S,   Gap2,   Gap0,   Apop }
typedef itk::RGBPixel< float >	ColorType
typedef GenomeType::GeneIdType	GeneIdType
typedef itk::bio::Genome	GenomeType
typedef unsigned long int	IdentifierType
Public Member Functions
virtual ColorType	GetColor (void) const
IdentifierType	GetParentIdentifier (void) const
double	GetRadius (void) const
IdentifierType	GetSelfIdentifier (void) const
virtual bool	MarkedForRemoval (void) const
Static Public Member Functions
static unsigned long	GetDivisionMaximumLatencyTime (void)
static unsigned long	GetGrowthMaximumLatencyTime (void)
static double	GetGrowthRadiusLimit (void)
static void	Initialize (void)
static void	ResetCounter (void)
static void	SetChemoAttractantHighThreshold (double)
static void	SetChemoAttractantLowThreshold (double)
static void	SetDefaultColor (const ColorType &color)
static void	SetDefaultRadius (double)
static void	SetDivisionMaximumLatencyTime (unsigned long)
static void	SetEnergySelfRepairLevel (double)
static void	SetGrowthMaximumLatencyTime (unsigned long latency)
static void	SetGrowthRadiusIncrement (double)
static void	SetGrowthRadiusLimit (double)
static void	SetMaximumGenerationLimit (unsigned long)
static void	SetNutrientSelfRepairLevel (double)
Protected Member Functions
virtual void	Apoptosis (void)
	CellBase ()
virtual bool	CheckPointApoptosis (void)
virtual bool	CheckPointDNAReplication (void)
virtual bool	CheckPointGrowth (void)
virtual bool	CheckPointMitosis (void)
virtual void	ComputeGeneNetwork (void)
virtual void	DNAReplication (void)
virtual void	EnergyIntake (void)
virtual void	Grow (void)
void	MarkForRemoval (void)
virtual void	NutrientsIntake (void)
virtual void	SecreteProducts (void)
virtual	~CellBase ()
Protected Attributes
double	m_ChemoAttractantLevel
ColorType	m_Color
CellCycleState	m_CycleState
unsigned long	m_DivisionLatencyTime
double	m_EnergyReserveLevel
unsigned long	m_Generation
GenomeType *	m_Genome
GenomeType *	m_GenomeCopy
unsigned long	m_GrowthLatencyTime
bool	m_MarkedForRemoval
double	m_NutrientsReserveLevel
IdentifierType	m_ParentIdentifier
double	m_Pressure
double	m_Radius
bool	m_ScheduleApoptosis
IdentifierType	m_SelfIdentifier
Static Protected Attributes
static GeneIdType	BlueGene
static GeneIdType	Caspase
static GeneIdType	Cdk2E
static double	ChemoAttractantHighThreshold
static double	ChemoAttractantLowThreshold
static unsigned long	Counter
static ColorType	DefaultColor
static double	DefaultEnergyIntake
static double	DefaultNutrientsIntake
static double	DefaultRadius
static unsigned long	DivisionMaximumLatencyTime
static double	EnergySelfRepairLevel
static GeneIdType	GreenGene
static unsigned long	GrowthMaximumLatencyTime
static double	GrowthRadiusIncrement
static double	GrowthRadiusLimit
static ColorType	HopefullColor
static unsigned long	MaximumGenerationLimit
static double	NutrientSelfRepairLevel
static GeneIdType	Pressurin
static GeneIdType	RedGene
static ColorType	StarvingColor
static ColorType	WellNourishedColor

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Detailed Description

non-templated Base class from which the templated Cell classes will be derived. Derived classes are instantiated for a specific space dimension.

Definition at line 33 of file itkBioCellBase.h.

---

Member Typedef Documentation

typedef itk::RGBPixel<float> itk::bio::CellBase::ColorType

Definition at line 36 of file itkBioCellBase.h.

typedef GenomeType::GeneIdType itk::bio::CellBase::GeneIdType

Definition at line 39 of file itkBioCellBase.h.

typedef itk::bio::Genome itk::bio::CellBase::GenomeType

Definition at line 38 of file itkBioCellBase.h.

typedef unsigned long int itk::bio::CellBase::IdentifierType

Definition at line 37 of file itkBioCellBase.h.

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Member Enumeration Documentation

enum itk::bio::CellBase::CellCycleState

Enumerator:

M
Gap1
S
Gap2
Gap0
Apop

Definition at line 49 of file itkBioCellBase.h.

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Constructor & Destructor Documentation

itk::bio::CellBase::CellBase

(

)

[protected]

virtual itk::bio::CellBase::~CellBase

(

)

[protected, virtual]

---

Member Function Documentation

virtual void itk::bio::CellBase::Apoptosis

(

void

)

[protected, virtual]

Reimplemented in itk::bio::Cell< NSpaceDimension >.

virtual bool itk::bio::CellBase::CheckPointApoptosis

(

void

)

[protected, virtual]

virtual bool itk::bio::CellBase::CheckPointDNAReplication

(

void

)

[protected, virtual]

virtual bool itk::bio::CellBase::CheckPointGrowth

(

void

)

[protected, virtual]

virtual bool itk::bio::CellBase::CheckPointMitosis

(

void

)

[protected, virtual]

virtual void itk::bio::CellBase::ComputeGeneNetwork

(

void

)

[protected, virtual]

virtual void itk::bio::CellBase::DNAReplication

(

void

)

[protected, virtual]

virtual void itk::bio::CellBase::EnergyIntake

(

void

)

[protected, virtual]

virtual ColorType itk::bio::CellBase::GetColor

(

void

)

const [virtual]

static unsigned long itk::bio::CellBase::GetDivisionMaximumLatencyTime

(

void

)

[static]

static unsigned long itk::bio::CellBase::GetGrowthMaximumLatencyTime

(

void

)

[static]

static double itk::bio::CellBase::GetGrowthRadiusLimit

(

void

)

[static]

IdentifierType itk::bio::CellBase::GetParentIdentifier

(

void

)

const

double itk::bio::CellBase::GetRadius

(

void

)

const

IdentifierType itk::bio::CellBase::GetSelfIdentifier

(

void

)

const

virtual void itk::bio::CellBase::Grow

(

void

)

[protected, virtual]

static void itk::bio::CellBase::Initialize

(

void

)

[static]

virtual bool itk::bio::CellBase::MarkedForRemoval

(

void

)

const [virtual]

void itk::bio::CellBase::MarkForRemoval

(

void

)

[protected]

virtual void itk::bio::CellBase::NutrientsIntake

(

void

)

[protected, virtual]

static void itk::bio::CellBase::ResetCounter

(

void

)

[static]

virtual void itk::bio::CellBase::SecreteProducts

(

void

)

[protected, virtual]

static void itk::bio::CellBase::SetChemoAttractantHighThreshold

(

double

)

[static]

static void itk::bio::CellBase::SetChemoAttractantLowThreshold

(

double

)

[static]

static void itk::bio::CellBase::SetDefaultColor

(

const ColorType &

color

)

[static]

static void itk::bio::CellBase::SetDefaultRadius

(

double

)

[static]

static void itk::bio::CellBase::SetDivisionMaximumLatencyTime

(

unsigned

long

)

[static]

static void itk::bio::CellBase::SetEnergySelfRepairLevel

(

double

)

[static]

static void itk::bio::CellBase::SetGrowthMaximumLatencyTime

(

unsigned long

latency

)

[static]

static void itk::bio::CellBase::SetGrowthRadiusIncrement

(

double

)

[static]

static void itk::bio::CellBase::SetGrowthRadiusLimit

(

double

)

[static]

static void itk::bio::CellBase::SetMaximumGenerationLimit

(

unsigned

long

)

[static]

static void itk::bio::CellBase::SetNutrientSelfRepairLevel

(

double

)

[static]

---

Member Data Documentation

GeneIdType itk::bio::CellBase::BlueGene [static, protected]

Definition at line 81 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Caspase [static, protected]

Definition at line 85 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Cdk2E [static, protected]

Definition at line 84 of file itkBioCellBase.h.

double itk::bio::CellBase::ChemoAttractantHighThreshold [static, protected]

Definition at line 106 of file itkBioCellBase.h.

double itk::bio::CellBase::ChemoAttractantLowThreshold [static, protected]

Definition at line 105 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::Counter [static, protected]

Definition at line 99 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::DefaultColor [static, protected]

Definition at line 79 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultEnergyIntake [static, protected]

Definition at line 96 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultNutrientsIntake [static, protected]

Definition at line 97 of file itkBioCellBase.h.

double itk::bio::CellBase::DefaultRadius [static, protected]

Definition at line 111 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::DivisionMaximumLatencyTime [static, protected]

Definition at line 91 of file itkBioCellBase.h.

double itk::bio::CellBase::EnergySelfRepairLevel [static, protected]

Definition at line 93 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::GreenGene [static, protected]

Definition at line 83 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::GrowthMaximumLatencyTime [static, protected]

Definition at line 90 of file itkBioCellBase.h.

double itk::bio::CellBase::GrowthRadiusIncrement [static, protected]

Definition at line 113 of file itkBioCellBase.h.

double itk::bio::CellBase::GrowthRadiusLimit [static, protected]

Definition at line 112 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::HopefullColor [static, protected]

Definition at line 102 of file itkBioCellBase.h.

double itk::bio::CellBase::m_ChemoAttractantLevel [protected]

Definition at line 165 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::m_Color [protected]

Definition at line 146 of file itkBioCellBase.h.

CellCycleState itk::bio::CellBase::m_CycleState [protected]

Definition at line 159 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::m_DivisionLatencyTime [protected]

Definition at line 162 of file itkBioCellBase.h.

double itk::bio::CellBase::m_EnergyReserveLevel [protected]

Definition at line 149 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::m_Generation [protected]

Definition at line 157 of file itkBioCellBase.h.

GenomeType* itk::bio::CellBase::m_Genome [protected]

Definition at line 108 of file itkBioCellBase.h.

GenomeType* itk::bio::CellBase::m_GenomeCopy [protected]

Definition at line 109 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::m_GrowthLatencyTime [protected]

Definition at line 152 of file itkBioCellBase.h.

bool itk::bio::CellBase::m_MarkedForRemoval [protected]

Definition at line 161 of file itkBioCellBase.h.

double itk::bio::CellBase::m_NutrientsReserveLevel [protected]

Definition at line 150 of file itkBioCellBase.h.

IdentifierType itk::bio::CellBase::m_ParentIdentifier [protected]

Definition at line 154 of file itkBioCellBase.h.

double itk::bio::CellBase::m_Pressure [protected]

Definition at line 144 of file itkBioCellBase.h.

double itk::bio::CellBase::m_Radius [protected]

Definition at line 148 of file itkBioCellBase.h.

bool itk::bio::CellBase::m_ScheduleApoptosis [protected]

Definition at line 164 of file itkBioCellBase.h.

IdentifierType itk::bio::CellBase::m_SelfIdentifier [protected]

Definition at line 155 of file itkBioCellBase.h.

unsigned long itk::bio::CellBase::MaximumGenerationLimit [static, protected]

Definition at line 89 of file itkBioCellBase.h.

double itk::bio::CellBase::NutrientSelfRepairLevel [static, protected]

Definition at line 94 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::Pressurin [static, protected]

Definition at line 86 of file itkBioCellBase.h.

GeneIdType itk::bio::CellBase::RedGene [static, protected]

Definition at line 82 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::StarvingColor [static, protected]

Definition at line 103 of file itkBioCellBase.h.

ColorType itk::bio::CellBase::WellNourishedColor [static, protected]

Definition at line 101 of file itkBioCellBase.h.

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The documentation for this class was generated from the following file:

• itkBioCellBase.h