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itk::LevelSetMotionRegistrationFunction

itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField > Class Template Reference
[Finite Difference Functions]

#include <itkLevelSetMotionRegistrationFunction.h>

Inheritance diagram for itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >:

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Collaboration diagram for itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >:

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List of all members.

Detailed Description

template<class TFixedImage, class TMovingImage, class TDeformationField>
class itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >

This class encapsulate the PDE which drives the demons registration algorithm. It is used by LevelSetMotionRegistrationFilter to compute the output deformation field which will map a moving image onto a a fixed image.

Non-integer moving image values are obtained by using interpolation. The default interpolator is of type LinearInterpolateImageFunction. The user may set other interpolators via method SetMovingImageInterpolator. Note that the input interpolator must derive from baseclass InterpolateImageFunction.

This class is templated over the fixed image type, moving image type, and the deformation field type.

Warning:
This filter assumes that the fixed image type, moving image type and deformation field type all have the same number of dimensions.
See also:
LevelSetMotionRegistrationFilter

Definition at line 54 of file itkLevelSetMotionRegistrationFunction.h.

Public Types

typedef SmartPointer< const
Self > 		ConstPointer
typedef double CoordRepType
typedef ZeroFluxNeumannBoundaryCondition<
ImageType > 		DefaultBoundaryConditionType
typedef LinearInterpolateImageFunction<
MovingImageType, CoordRepType > 		DefaultInterpolatorType
typedef Superclass::DeformationFieldType DeformationFieldType
typedef Superclass::DeformationFieldTypePointer DeformationFieldTypePointer
typedef Superclass::FixedImagePointer FixedImagePointer
typedef Superclass::FixedImageType FixedImageType
typedef Superclass::FloatOffsetType FloatOffsetType
typedef TDeformationField ImageType
typedef FixedImageType::IndexType IndexType
typedef InterpolatorType::Pointer InterpolatorPointer
typedef InterpolateImageFunction<
MovingImageType, CoordRepType > 		InterpolatorType
typedef Superclass::MovingImagePointer MovingImagePointer
typedef MovingImageSmoothingFilterType::Pointer MovingImageSmoothingFilterPointer
typedef SmoothingRecursiveGaussianImageFilter<
MovingImageType > 		MovingImageSmoothingFilterType
typedef Superclass::MovingImageType MovingImageType
typedef MovingImageType::SpacingType MovingSpacingType
typedef Superclass::NeighborhoodType NeighborhoodType
typedef double PixelRealType
typedef Superclass::PixelType PixelType
typedef SmartPointer< Self > Pointer
typedef InterpolatorType::PointType PointType
typedef Superclass::RadiusType RadiusType
typedef LevelSetMotionRegistrationFunction Self
typedef FixedImageType::SizeType SizeType
typedef FixedImageType::SpacingType SpacingType
typedef PDEDeformableRegistrationFunction<
TFixedImage, TMovingImage,
TDeformationField > 		Superclass
typedef Superclass::TimeStepType TimeStepType
typedef CovariantVector< double,
itkGetStaticConstMacro(ImageDimension)> 		CovariantVectorType
typedef Vector< double, itkGetStaticConstMacro(ImageDimension)> VectorType

Public Member Functions

virtual TimeStepType ComputeGlobalTimeStep (void *GlobalData) const
virtual PixelType ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &offset=FloatOffsetType(0.0))=0
virtual PixelType ComputeUpdate (const NeighborhoodType &neighborhood, void *globalData, const FloatOffsetType &offset=FloatOffsetType(0.0))
virtual Pointer CreateAnother () const
virtual void Delete ()
DeformationFieldTypePointer GetDeformationField (void)
double GetEnergy () const
const FixedImageType * GetFixedImage (void) const
double GetGradientStep () const
virtual double GetMetric () const
const MovingImageType * GetMovingImage (void) const
InterpolatorType * GetMovingImageInterpolator (void)
virtual const char * GetNameOfClass () const
bool GetNormalizeGradient () const
const RadiusType & GetRadius () const
virtual int GetReferenceCount () const
virtual double GetRMSChange () const
virtual void InitializeIteration ()
 itkStaticConstMacro (ImageDimension, unsigned int, ImageType::ImageDimension)
 itkStaticConstMacro (ImageDimension, unsigned int, Superclass::ImageDimension)
void Print (std::ostream &os, Indent indent=0) const
virtual void Register () const
virtual void ReleaseGlobalDataPointer (void *GlobalData) const
void SetDeformationField (DeformationFieldTypePointer ptr)
void SetEnergy (double e)
void SetFixedImage (const FixedImageType *ptr)
void SetGradientStep (double e)
void SetMovingImage (const MovingImageType *ptr)
void SetMovingImageInterpolator (InterpolatorType *ptr)
void SetNormalizeGradient (bool e)
void SetRadius (const RadiusType &r)
virtual void SetReferenceCount (int)
void SetScaleCoefficients (PixelRealType vals[ImageDimension])
virtual void UnRegister () const
virtual double GetAlpha () const
virtual void SetAlpha (double)
virtual void * GetGlobalDataPointer () const
virtual double GetGradientMagnitudeThreshold () const
virtual void SetGradientMagnitudeThreshold (double)
virtual double GetGradientSmoothingStandardDeviations () const
virtual void SetGradientSmoothingStandardDeviations (double)
virtual double GetIntensityDifferenceThreshold () const
virtual void SetIntensityDifferenceThreshold (double)

Static Public Member Functions

static void BreakOnError ()
static Pointer New ()

Protected Types

typedef ConstNeighborhoodIterator<
FixedImageType > 		FixedImageNeighborhoodIteratorType

Protected Member Functions

 LevelSetMotionRegistrationFunction ()
void PrintSelf (std::ostream &os, Indent indent) const
 ~LevelSetMotionRegistrationFunction ()
virtual void PrintHeader (std::ostream &os, Indent indent) const
virtual void PrintTrailer (std::ostream &os, Indent indent) const

Protected Attributes

DeformationFieldTypePointer m_DeformationField
double m_Energy
FixedImagePointer m_FixedImage
double m_GradientStep
MovingImagePointer m_MovingImage
bool m_NormalizeGradient
RadiusType m_Radius
volatile int m_ReferenceCount
SimpleFastMutexLock m_ReferenceCountLock
PixelRealType m_ScaleCoefficients [ImageDimension]

Classes

struct  GlobalDataStruct

Member Typedef Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef SmartPointer<const Self> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ConstPointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 67 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CoordRepType

Interpolator type.

Definition at line 105 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef CovariantVector<double,itkGetStaticConstMacro(ImageDimension)> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::CovariantVectorType

Definition at line 117 of file itkLevelSetMotionRegistrationFunction.h.

typedef ZeroFluxNeumannBoundaryCondition<ImageType> itk::FiniteDifferenceFunction< TDeformationField >::DefaultBoundaryConditionType [inherited]

The default boundary condition for finite difference functions that is used unless overridden in the Evaluate() method.

Definition at line 93 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef LinearInterpolateImageFunction<MovingImageType,CoordRepType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DefaultInterpolatorType

Definition at line 111 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::DeformationFieldType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DeformationFieldType

Deformation field type.

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 89 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::DeformationFieldTypePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::DeformationFieldTypePointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 91 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef ConstNeighborhoodIterator<FixedImageType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImageNeighborhoodIteratorType [protected]

FixedImage image neighborhood iterator type.

Definition at line 211 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::FixedImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImagePointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 83 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::FixedImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FixedImageType

FixedImage image type.

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 82 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::FloatOffsetType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::FloatOffsetType

A floating point offset from an image grid location. Used for interpolation among grid values in a neighborhood.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 101 of file itkLevelSetMotionRegistrationFunction.h.

typedef TDeformationField itk::FiniteDifferenceFunction< TDeformationField >::ImageType [inherited]

Extract some parameters from the image type

Definition at line 77 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef FixedImageType::IndexType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::IndexType

Definition at line 84 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef InterpolatorType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InterpolatorPointer

Definition at line 108 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef InterpolateImageFunction<MovingImageType,CoordRepType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InterpolatorType

Definition at line 107 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::MovingImagePointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImagePointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 78 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef MovingImageSmoothingFilterType::Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageSmoothingFilterPointer

Definition at line 124 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef SmoothingRecursiveGaussianImageFilter<MovingImageType> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageSmoothingFilterType

Moving image gradient calculator type.

Definition at line 122 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::MovingImageType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingImageType

MovingImage image type.

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 74 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef MovingImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::MovingSpacingType

Definition at line 79 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::NeighborhoodType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::NeighborhoodType

The type of data structure that is passed to this function object to evaluate at a pixel that does not lie on a data set boundary.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 100 of file itkLevelSetMotionRegistrationFunction.h.

typedef double itk::FiniteDifferenceFunction< TDeformationField >::PixelRealType [inherited]

Definition at line 82 of file itkFiniteDifferenceFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PixelType

Inherit some enums from the superclass.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 98 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef SmartPointer<Self> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Pointer

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 66 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef InterpolatorType::PointType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PointType

Definition at line 109 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::RadiusType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::RadiusType

Neighborhood radius type

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 99 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef LevelSetMotionRegistrationFunction itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Self

Standard class typedefs.

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 62 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef FixedImageType::SizeType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SizeType

Definition at line 85 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef FixedImageType::SpacingType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SpacingType

Definition at line 86 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField > itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::Superclass

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

Definition at line 65 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Superclass::TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::TimeStepType

Define the TimeStepType to always be double.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 102 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
typedef Vector<double,itkGetStaticConstMacro(ImageDimension)> itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::VectorType

Vector types.

Definition at line 115 of file itkLevelSetMotionRegistrationFunction.h.

Constructor & Destructor Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField>
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::LevelSetMotionRegistrationFunction (  )  [protected]

template<class TFixedImage, class TMovingImage, class TDeformationField>
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::~LevelSetMotionRegistrationFunction (  )  [inline, protected]

Definition at line 206 of file itkLevelSetMotionRegistrationFunction.h.

Member Function Documentation

static void itk::LightObject::BreakOnError (  )  [static, inherited]

This method is called when itkExceptionMacro executes. It allows the debugger to break on error.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual TimeStepType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ComputeGlobalTimeStep ( void *  GlobalData  )  const [virtual]

Compute the time step that can taken for this iterations. In this context, the timestep is a function of the maximum gradients.

Implements itk::FiniteDifferenceFunction< TDeformationField >.

virtual PixelType itk::FiniteDifferenceFunction< TDeformationField >::ComputeUpdate ( const NeighborhoodType &  neighborhood,
void *  globalData,
const FloatOffsetType &  offset = FloatOffsetType(0.0) 
) [pure virtual, inherited]

This method is called by a finite difference solver image filter at each pixel that does not lie on a data set boundary. The width of the data set boundary is defined by the width of the neighborhood being evaluated.

The neighborhood argument is the neighborhood data. The globalData argument is a pointer to a data structure that holds values that need to be persistent across calls to this function, but cannot be stored in the function object itself for thread-safety reasons. Examples are values needed to compute the time-step for an iteration of the solver.

See also:
InitializeIteration

ComputeGlobalTimeStep

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual PixelType itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ComputeUpdate ( const NeighborhoodType &  neighborhood,
void *  globalData,
const FloatOffsetType &  offset = FloatOffsetType(0.0) 
) [virtual]

This method is called by a finite difference solver image filter at each pixel that does not lie on a data set boundary

virtual Pointer itk::LightObject::CreateAnother (  )  const [virtual, inherited]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented in itk::Object.

virtual void itk::LightObject::Delete (  )  [virtual, inherited]

Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetAlpha (  )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField>
DeformationFieldTypePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetDeformationField ( void   )  [inline, inherited]

Get the fixed image.

Definition at line 87 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetEnergy (  )  const [inline, inherited]

Definition at line 92 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
const FixedImageType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetFixedImage ( void   )  const [inline, inherited]

Get the fixed image.

Definition at line 79 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGlobalDataPointer (  )  const [inline, virtual]

Return a pointer to a global data structure that is passed to this object from the solver at each calculation.

Implements itk::FiniteDifferenceFunction< TDeformationField >.

Definition at line 140 of file itkLevelSetMotionRegistrationFunction.h.

References itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_MaxL1Norm, itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_NumberOfPixelsProcessed, itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_SumOfSquaredChange, and itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GlobalDataStruct::m_SumOfSquaredDifference.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientMagnitudeThreshold (  )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientSmoothingStandardDeviations (  )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetGradientStep (  )  const [inline, inherited]

Definition at line 94 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetIntensityDifferenceThreshold (  )  const [virtual]

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMetric (  )  const [inline, virtual]

Get the metric value. The metric value is the mean square difference in intensity between the fixed image and transforming moving image computed over the the overlapping region between the two images.

Definition at line 167 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
const MovingImageType* itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMovingImage ( void   )  const [inline, inherited]

Get the moving image.

Definition at line 71 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
InterpolatorType* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetMovingImageInterpolator ( void   )  [inline]

Get the moving image interpolator.

Definition at line 131 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual const char* itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetNameOfClass (  )  const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

template<class TFixedImage, class TMovingImage, class TDeformationField>
bool itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetNormalizeGradient (  )  const [inline, inherited]

Definition at line 96 of file itkPDEDeformableRegistrationFunction.h.

const RadiusType& itk::FiniteDifferenceFunction< TDeformationField >::GetRadius ( void   )  const [inline, inherited]

Returns the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations.

Definition at line 143 of file itkFiniteDifferenceFunction.h.

virtual int itk::LightObject::GetReferenceCount (  )  const [inline, virtual, inherited]

Gets the reference count on this object.

Definition at line 98 of file itkLightObject.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual double itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::GetRMSChange (  )  const [inline, virtual]

Get the rms change in deformation field.

Definition at line 171 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::InitializeIteration (  )  [virtual]

Set the object's state before each iteration.

Reimplemented from itk::FiniteDifferenceFunction< TDeformationField >.

itk::FiniteDifferenceFunction< TDeformationField >::itkStaticConstMacro ( ImageDimension  ,
unsigned  int,
ImageType::ImageDimension   
) [inherited]

Save image dimension.

template<class TFixedImage, class TMovingImage, class TDeformationField>
itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::itkStaticConstMacro ( ImageDimension  ,
unsigned  int,
Superclass::ImageDimension   
)

Inherit some enums from the superclass.

template<class TFixedImage, class TMovingImage, class TDeformationField>
static Pointer itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::New (  )  [static]

Method for creation through the object factory.

Reimplemented from itk::LightObject.

void itk::LightObject::Print ( std::ostream &  os,
Indent  indent = 0 
) const [inherited]

Cause the object to print itself out.

Referenced by itk::WeakPointer< itk::ProcessObject >::Print().

virtual void itk::LightObject::PrintHeader ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >.

virtual void itk::LightObject::PrintTrailer ( std::ostream &  os,
Indent  indent 
) const [protected, virtual, inherited]

virtual void itk::LightObject::Register (  )  const [virtual, inherited]

Increase the reference count (mark as used by another object).

Reimplemented in itk::Object.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::ReleaseGlobalDataPointer ( void *  GlobalData  )  const [virtual]

Release memory for global data structure.

Implements itk::FiniteDifferenceFunction< TDeformationField >.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetAlpha ( double   )  [virtual]

Set/Get the parameter alpha. Alpha is added to the calculated gradient magnitude prior to normalizing the gradient to protect against numerical instability as the gradient magnitude approaches zero. This should be set as a small fraction of the intensity dynamic range, for instance 0.04%. Default is the absolute (not percentage) value of 0.1.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetDeformationField ( DeformationFieldTypePointer  ptr  )  [inline, inherited]

Set the fixed image.

Definition at line 83 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetEnergy ( double  e  )  [inline, inherited]

Definition at line 91 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetFixedImage ( const FixedImageType *  ptr  )  [inline, inherited]

Set the fixed image.

Definition at line 75 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientMagnitudeThreshold ( double   )  [virtual]

Set/Get the threshold below which the gradient magnitude is considered the zero vector. Default is 1e-9.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientSmoothingStandardDeviations ( double   )  [virtual]

Set/Get the standard deviation used for smoothing the moving image prior to calculating gradients.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetGradientStep ( double  e  )  [inline, inherited]

Definition at line 93 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
virtual void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetIntensityDifferenceThreshold ( double   )  [virtual]

Set/Get the threshold below which the absolute difference of intensity yields a match. When the intensities match between a moving and fixed image pixel, the update vector (for that iteration) will be the zero vector. Default is 0.001.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetMovingImage ( const MovingImageType *  ptr  )  [inline, inherited]

Set the moving image.

Definition at line 67 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::LevelSetMotionRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetMovingImageInterpolator ( InterpolatorType *  ptr  )  [inline]

Set the moving image interpolator.

Definition at line 127 of file itkLevelSetMotionRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
void itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::SetNormalizeGradient ( bool  e  )  [inline, inherited]

Definition at line 95 of file itkPDEDeformableRegistrationFunction.h.

void itk::FiniteDifferenceFunction< TDeformationField >::SetRadius ( const RadiusType &  r  )  [inline, inherited]

Sets the radius of the neighborhood this FiniteDifferenceFunction needs to perform its calculations.

Definition at line 138 of file itkFiniteDifferenceFunction.h.

virtual void itk::LightObject::SetReferenceCount ( int   )  [virtual, inherited]

Sets the reference count on this object. This is a dangerous method, use it with care.

Reimplemented in itk::Object.

void itk::FiniteDifferenceFunction< TDeformationField >::SetScaleCoefficients ( PixelRealType  vals[ImageDimension]  )  [inline, inherited]

Set the ScaleCoefficients for the difference operators. The defaults a 1.0. These can be set to take the image spacing into account.

Definition at line 149 of file itkFiniteDifferenceFunction.h.

virtual void itk::LightObject::UnRegister (  )  const [virtual, inherited]

Decrease the reference count (release by another object).

Reimplemented in itk::Object.

Member Data Documentation

template<class TFixedImage, class TMovingImage, class TDeformationField>
DeformationFieldTypePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_DeformationField [protected, inherited]

The deformation field.

Definition at line 128 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_Energy [mutable, protected, inherited]

Definition at line 130 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
FixedImagePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_FixedImage [protected, inherited]

The fixed image.

Definition at line 125 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
double itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_GradientStep [mutable, protected, inherited]

Definition at line 132 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
MovingImagePointer itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_MovingImage [protected, inherited]

The moving image.

Definition at line 119 of file itkPDEDeformableRegistrationFunction.h.

template<class TFixedImage, class TMovingImage, class TDeformationField>
bool itk::PDEDeformableRegistrationFunction< TFixedImage, TMovingImage, TDeformationField >::m_NormalizeGradient [protected, inherited]

Definition at line 131 of file itkPDEDeformableRegistrationFunction.h.

RadiusType itk::FiniteDifferenceFunction< TDeformationField >::m_Radius [protected, inherited]

Definition at line 195 of file itkFiniteDifferenceFunction.h.

volatile int itk::LightObject::m_ReferenceCount [mutable, protected, inherited]

Number of uses of this object by other objects.

Definition at line 119 of file itkLightObject.h.

SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited]

Mutex lock to protect modification to the reference count

Definition at line 122 of file itkLightObject.h.

PixelRealType itk::FiniteDifferenceFunction< TDeformationField >::m_ScaleCoefficients[ImageDimension] [protected, inherited]

Definition at line 196 of file itkFiniteDifferenceFunction.h.

The documentation for this class was generated from the following file:
Generated at Sun Sep 23 18:33:55 2007 for ITK by doxygen 1.5.1 written by Dimitri van Heesch, © 1997-2000