#include <itkMRFImageFilter.h>
Inheritance diagram for itk::MRFImageFilter< TInputImage, TClassifiedImage >:
This object classifies pixels based on a Markov Random Field (MRF) model.This implementation uses the maximum a posteriori (MAP) estimates for modeling the MRF. The object traverses the data set and uses the model generated by the Mahalanobis distance classifier to gets the the distance between each pixel in the data set to a set of known classes, updates the distances by evaluating the influence of its neighboring pixels (based on a MRF model) and finally, classifies each pixel to the class which has the minimum distance to that pixel (taking the neighborhood influence under consideration). DoNeighborhoodOperation is the function that can be modified to achieve different falvors of MRF filters in derived classes.
The a classified initial labeled image is needed. It is important that the number of expected classes be set before calling the classifier. In our case we have used the ImageClassifer using a Gaussian model to generate the initial labels. This classifier requires the user to ensure that an appropriate membership functions be provided. See the documentation of the image classifier class for more information.
The influence of a neighborhood on a given pixel's classification (the MRF term) is computed by calculating a weighted sum of number of class labels in a three dimensional neighborhood. The basic idea of this neighborhood influence is that if a large number of neighbors of a pixel are of one class, then the current pixel is likely to be of the same class.
The dimensions of the neighborhood is same as the input image dimension and values of the weighting parameters are either specified by the user through the beta matrix parameter. The default weighting table is generated during object construction. The following table shows an example of a 3x3x3 neighborhood and the weighting values used. A 3 x 3 x 3 kernel is used where each value is a nonnegative parameter, which encourages neighbors to be of the same class. In this example, the influence of the pixels in the same slice is assigned a weight 1.7, the influence of the pixels in the same location in the previous and next slice is assigned a weight 1.5, while a weight 1.3 is assigned to the influence of the north, south, east, west and diagonal pixels in the previous and next slices.
![\[\begin{tabular}{ccc} \begin{tabular}{|c|c|c|} 1.3 & 1.3 & 1.3 \\ 1.3 & 1.5 & 1.3 \\ 1.3 & 1.3 & 1.3 \\ \end{tabular} & \begin{tabular}{|c|c|c|} 1.7 & 1.7 & 1.7 \\ 1.7 & 0 & 1.7 \\ 1.7 & 1.7 & 1.7 \\ \end{tabular} & \begin{tabular}{|c|c|c|} 1.3 & 1.3 & 1.3 \\ 1.5 & 1.5 & 1.3 \\ 1.3 & 1.3 & 1.3 \\ \end{tabular} \\ \end{tabular}\]](form_61.png)
The user needs to set the neighborhood size using the SetNeighborhoodRadius functions. The details on the semantics of a neighborhood can be found in the documentation associated with the itkNeighborhood and related objects. NOTE: The size of the neighborhood must match with the size of the neighborhood weighting parameters set by the user.
For minimization of the MRF labeling function the MinimizeFunctional virtual method is called. For our current implementation we use the the iterated conditional modes (ICM) algorithm described by Besag in the paper ``On the Statistical Analysis of Dirty Pictures'' in J. Royal Stat. Soc. B, Vol. 48, 1986.
In each iteration, the algorithm visits each pixel in turn and determines whether to update its classification by computing the influence of the classification of the pixel's neighbors and of the intensity data. On each iteration after the first, we reexamine the classification of a pixel only if the classification of some of its neighbors has changed in the previous iteration. The pixels' classification is updated using a synchronous scheme (iteration by iteration) until the error reaches less than the threshold or the number of iteration exceed the maximum set number of iterations. Note: The current implementation supports betaMatrix default weight for two and three dimensional images only. The default for higher dimension is set to unity. This should be over ridded by custom weights after filter initialization.
Classifier
Definition at line 131 of file itkMRFImageFilter.h.
| typedef ImageClassifierBase<TInputImage,TClassifiedImage> itk::MRFImageFilter< TInputImage, TClassifiedImage >::ClassifierType |
Type definitions for classifier to be used for the MRF lavbelling.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 201 of file itkMRFImageFilter.h.
| typedef SmartPointer<const Self> itk::MRFImageFilter< TInputImage, TClassifiedImage >::ConstPointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 139 of file itkMRFImageFilter.h.
typedef DataObject::Pointer itk::ImageSource< TClassifiedImage >::DataObjectPointer [inherited] |
Smart Pointer type to a DataObject.
Reimplemented from itk::ProcessObject.
Definition at line 62 of file itkImageSource.h.
typedef std::vector<DataObjectPointer> itk::ProcessObject::DataObjectPointerArray [inherited] |
STL Array of SmartPointers to DataObjects
Definition at line 103 of file itkProcessObject.h.
typedef DataObjectPointerArray::size_type itk::ProcessObject::DataObjectPointerArraySizeType [inherited] |
Size type of an std::vector
Definition at line 112 of file itkProcessObject.h.
| typedef LabelledImageIndexType::IndexValueType itk::MRFImageFilter< TInputImage, TClassifiedImage >::IndexValueType |
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 187 of file itkMRFImageFilter.h.
| typedef TInputImage::ConstPointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageConstPointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 151 of file itkMRFImageFilter.h.
| typedef InputImageFaceListType::iterator itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageFaceListIterator |
Definition at line 223 of file itkMRFImageFilter.h.
| typedef InputImageFacesCalculator::FaceListType itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageFaceListType |
Definition at line 220 of file itkMRFImageFilter.h.
| typedef NeighborhoodAlgorithm::ImageBoundaryFacesCalculator< TInputImage > itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageFacesCalculator |
Definition at line 217 of file itkMRFImageFilter.h.
| typedef ConstNeighborhoodIterator< TInputImage > itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageNeighborhoodIterator |
Input image neighborhood iterator and kernel size typedef
Definition at line 211 of file itkMRFImageFilter.h.
| typedef InputImageNeighborhoodIterator::RadiusType itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageNeighborhoodRadiusType |
Definition at line 214 of file itkMRFImageFilter.h.
| typedef TInputImage::PixelType itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImagePixelType |
Type definition for the input image pixel type.
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 154 of file itkMRFImageFilter.h.
| typedef TInputImage::Pointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImagePointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 150 of file itkMRFImageFilter.h.
| typedef ImageRegionConstIterator<TInputImage> itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageRegionConstIterator |
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 161 of file itkMRFImageFilter.h.
| typedef ImageRegionIterator<TInputImage> itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageRegionIterator |
Type definition for the input image region iterator
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 160 of file itkMRFImageFilter.h.
| typedef TInputImage::RegionType itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageRegionType |
Type definition for the input image region type.
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Definition at line 157 of file itkMRFImageFilter.h.
| typedef TInputImage itk::MRFImageFilter< TInputImage, TClassifiedImage >::InputImageType |
Type definition for the input image.
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 146 of file itkMRFImageFilter.h.
typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension)> itk::ImageToImageFilter< TInputImage , TClassifiedImage >::InputToOutputRegionCopierType [protected, inherited] |
Typedef for the region copier function object that converts an input region to an output region.
Definition at line 163 of file itkImageToImageFilter.h.
| typedef LabelledImageFaceListType::iterator itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageFaceListIterator |
Definition at line 239 of file itkMRFImageFilter.h.
| typedef LabelledImageFacesCalculator::FaceListType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageFaceListType |
Definition at line 236 of file itkMRFImageFilter.h.
| typedef NeighborhoodAlgorithm::ImageBoundaryFacesCalculator< TClassifiedImage > itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageFacesCalculator |
Definition at line 233 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::IndexType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageIndexType |
Type definition for the classified image index type.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 186 of file itkMRFImageFilter.h.
| typedef NeighborhoodIterator< TClassifiedImage > itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageNeighborhoodIterator |
Labelled image neighborhood interator typedef
Definition at line 227 of file itkMRFImageFilter.h.
| typedef LabelledImageNeighborhoodIterator::RadiusType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageNeighborhoodRadiusType |
Definition at line 230 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::OffsetType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageOffsetType |
Type definition for the classified image offset type.
Definition at line 190 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::PixelType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImagePixelType |
Type definitions for the classified image pixel type. It has to be the same type as the training image.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 179 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::Pointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImagePointer |
Type definitions for the labelled image. It is derived from the training image.
Definition at line 175 of file itkMRFImageFilter.h.
| typedef ImageRegionIterator<TClassifiedImage> itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageRegionIterator |
Type definition for the input image region iterator
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 194 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::RegionType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelledImageRegionType |
Type definitions for the classified image pixel type. It has to be the same type as the training image.
Definition at line 183 of file itkMRFImageFilter.h.
typedef ImageRegionIterator< LabelStatusImageType > itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelStatusImageIterator [protected] |
Definition at line 350 of file itkMRFImageFilter.h.
typedef NeighborhoodIterator< LabelStatusImageType > itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelStatusImageNeighborhoodIterator [protected] |
Labelled status image neighborhood interator typedef
Definition at line 354 of file itkMRFImageFilter.h.
typedef LabelStatusImageType::Pointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelStatusImagePointer [protected] |
Definition at line 348 of file itkMRFImageFilter.h.
typedef Image<int,itkGetStaticConstMacro(InputImageDimension) > itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelStatusImageType [protected] |
Definition at line 345 of file itkMRFImageFilter.h.
typedef LabelStatusImageType::IndexType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelStatusIndexType [protected] |
Definition at line 346 of file itkMRFImageFilter.h.
typedef LabelStatusImageType::RegionType itk::MRFImageFilter< TInputImage, TClassifiedImage >::LabelStatusRegionType [protected] |
Definition at line 347 of file itkMRFImageFilter.h.
| typedef TInputImage::SizeType itk::MRFImageFilter< TInputImage, TClassifiedImage >::NeighborhoodRadiusType |
Radius typedef support.
Definition at line 207 of file itkMRFImageFilter.h.
typedef OutputImageType::PixelType itk::ImageSource< TClassifiedImage >::OutputImagePixelType [inherited] |
Definition at line 71 of file itkImageSource.h.
| typedef Superclass::OutputImagePointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::OutputImagePointer |
Reimplemented from itk::ImageSource< TClassifiedImage >.
Definition at line 140 of file itkMRFImageFilter.h.
typedef Superclass::OutputImageRegionType itk::ImageToImageFilter< TInputImage , TClassifiedImage >::OutputImageRegionType [inherited] |
Superclass typedefs.
Reimplemented from itk::ImageSource< TClassifiedImage >.
Definition at line 75 of file itkImageToImageFilter.h.
typedef TClassifiedImage itk::ImageSource< TClassifiedImage >::OutputImageType [inherited] |
Some convenient typedefs.
Definition at line 65 of file itkImageSource.h.
typedef ImageToImageFilterDetail::ImageRegionCopier<itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension)> itk::ImageToImageFilter< TInputImage , TClassifiedImage >::OutputToInputRegionCopierType [protected, inherited] |
Typedef for the region copier function object that converts an output region to an input region.
Definition at line 168 of file itkImageToImageFilter.h.
| typedef SmartPointer<Self> itk::MRFImageFilter< TInputImage, TClassifiedImage >::Pointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 138 of file itkMRFImageFilter.h.
| typedef MRFImageFilter itk::MRFImageFilter< TInputImage, TClassifiedImage >::Self |
Standard class typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 136 of file itkMRFImageFilter.h.
| typedef TInputImage::SizeType itk::MRFImageFilter< TInputImage, TClassifiedImage >::SizeType |
Size and value typedef support.
Definition at line 204 of file itkMRFImageFilter.h.
| typedef ImageToImageFilter<TInputImage,TClassifiedImage> itk::MRFImageFilter< TInputImage, TClassifiedImage >::Superclass |
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
Definition at line 137 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::PixelType itk::MRFImageFilter< TInputImage, TClassifiedImage >::TrainingImagePixelType |
Type definitions for the training image pixel type.
Definition at line 171 of file itkMRFImageFilter.h.
| typedef TClassifiedImage::Pointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::TrainingImagePointer |
Type definitions for the training image.
Definition at line 168 of file itkMRFImageFilter.h.
| enum itk::MRFImageFilter::StopConditionType |
Definition at line 300 of file itkMRFImageFilter.h.
| itk::MRFImageFilter< TInputImage, TClassifiedImage >::MRFImageFilter | ( | ) | [protected] |
| itk::MRFImageFilter< TInputImage, TClassifiedImage >::~MRFImageFilter | ( | ) | [protected] |
| virtual void itk::ProcessObject::AbortGenerateDataOff | ( | ) | [virtual, inherited] |
| virtual void itk::ProcessObject::AbortGenerateDataOn | ( | ) | [virtual, inherited] |
Turn on and off the AbortGenerateData flag.
| virtual void itk::ProcessObject::AddInput | ( | DataObject * | input | ) | [protected, virtual, inherited] |
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | const [inherited] |
| unsigned long itk::Object::AddObserver | ( | const EventObject & | event, | |
| Command * | ||||
| ) | [inherited] |
Allow people to add/remove/invoke observers (callbacks) to any ITK object. This is an implementation of the subject/observer design pattern. An observer is added by specifying an event to respond to and an itk::Command to execute. It returns an unsigned long tag which can be used later to remove the event or retrieve the command. The memory for the Command becomes the responsibility of this object, so don't pass the same instance of a command to two different objects
| virtual void itk::ProcessObject::AddOutput | ( | DataObject * | output | ) | [protected, virtual, inherited] |
| virtual void itk::ImageSource< TClassifiedImage >::AfterThreadedGenerateData | ( | ) | [inline, protected, virtual, inherited] |
If an imaging filter needs to perform processing after all processing threads have completed, the filter can can provide an implementation for AfterThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.
Definition at line 254 of file itkImageSource.h.
| void itk::MRFImageFilter< TInputImage, TClassifiedImage >::Allocate | ( | ) | [protected] |
Allocate memory for labelled images.
| virtual void itk::ImageSource< TClassifiedImage >::AllocateOutputs | ( | ) | [protected, virtual, inherited] |
The GenerateData method normally allocates the buffers for all of the outputs of a filter. Some filters may want to override this default behavior. For example, a filter may have multiple outputs with varying resolution. Or a filter may want to process data in place by grafting its input to its output.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::ApplyMRFImageFilter | ( | ) | [protected, virtual] |
Apply MRF Classifier. In this example the images are labelled using Iterated Conditional Mode algorithm by J. Besag, "On statistical analysis of dirty pictures," J. Royal Stat. Soc. B, vol. 48, pp. 259-302, 1986.
| virtual void itk::ImageSource< TClassifiedImage >::BeforeThreadedGenerateData | ( | void | ) | [inline, protected, virtual, inherited] |
If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.
Definition at line 242 of file itkImageSource.h.
| static void itk::LightObject::BreakOnError | ( | ) | [static, inherited] |
This method is called when itkExceptionMacro executes. It allows the debugger to break on error.
| virtual void itk::ProcessObject::CacheInputReleaseDataFlags | ( | ) | [protected, virtual, inherited] |
Cache the state of any ReleaseDataFlag's on the inputs. While the filter is executing, we need to set the ReleaseDataFlag's on the inputs to false in case the current filter is implemented using a mini-pipeline (which will try to release the inputs). After the filter finishes, we restore the state of the ReleaseDataFlag's before the call to ReleaseInputs().
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::CallCopyInputRegionToOutputRegion | ( | OutputImageRegionType & | destRegion, | |
| const InputImageRegionType & | srcRegion | |||
| ) | [protected, virtual, inherited] |
This function calls the actual region copier to do the mapping from input image space to output image space. It uses a Function object used for dispatching to various routines to copy an input region (start index and size) to an output region. For most filters, this is a trivial copy because most filters require the input dimension to match the output dimension. However, some filters like itk::UnaryFunctorImageFilter can support output images of a higher dimension that the input.
This function object is used by the default implementation of GenerateOutputInformation(). It can also be used in routines like ThreadedGenerateData() where a filter may need to map an input region to an output region.
The default copier uses a "dispatch pattern" to call one of three overloaded functions depending on whether the input and output images are the same dimension, the input is a higher dimension that the output, or the input is of a lower dimension than the output. The use of an overloaded function is required for proper compilation of the various cases.
For the latter two cases, trivial implementations are used. If the input image is a higher dimension than the output, the first portion of the input region is copied to the output region. If the input region is a lower dimension than the output, the input region information is copied into the first portion of the output region and the rest of the output region is set to zero.
If a filter needs a different default behavior, it can override this method.
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::CallCopyOutputRegionToInputRegion | ( | InputImageRegionType & | destRegion, | |
| const OutputImageRegionType & | srcRegion | |||
| ) | [protected, virtual, inherited] |
This function calls the actual region copier to do the mapping from output image space to input image space. It uses a Function object used for dispatching to various routines to copy an output region (start index and size) to an input region. For most filters, this is a trivial copy because most filters require the input dimension to match the output dimension. However, some filters like itk::ExtractImageFilter can support output images of a lower dimension that the input.
This function object can be used by GenerateOutputInformation() to copy the input LargestPossibleRegion to the output LargestPossibleRegion and can also be used in GenerateData or ThreadedGenerateData() where a filter may need to map an output region to an input region.
The default copier uses a "dispatch pattern" to call one of three overloaded functions depending on whether the input and output images are the same dimension, the input is a higher dimension that the output, or the input is of a lower dimension than the output. The use of an overloaded function is required for proper compilation of the various cases.
For the latter two cases, trivial implementations are used. If the input image is a higher dimension than the output, the output region information is copied into the first portion of the input region and the rest of the input region is set to zero. If the input region is a lower dimension than the output, the first portion of the output region is copied to the input region.
If a filter needs a different default behavior, it can override this method. The ExtractImageFilter overrides this function object so that if the input image is a higher dimension than the output image, the filter can control "where" in the input image the output subimage is extracted (as opposed to mapping to first few dimensions of the input).
| virtual LightObject::Pointer itk::Object::CreateAnother | ( | ) | const [virtual, inherited] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LightObject.
| virtual void itk::Object::DebugOff | ( | ) | const [virtual, inherited] |
Turn debugging output off.
| virtual void itk::Object::DebugOn | ( | ) | const [virtual, inherited] |
Turn debugging output on.
| virtual void itk::LightObject::Delete | ( | ) | [virtual, inherited] |
Delete an itk object. This method should always be used to delete an object when the new operator was used to create it. Using the C delete method will not work with reference counting.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::DoNeighborhoodOperation | ( | const InputImageNeighborhoodIterator & | imageIter, | |
| LabelledImageNeighborhoodIterator & | labelledIter, | |||
| LabelStatusImageNeighborhoodIterator & | labelStatusIter | |||
| ) | [protected, virtual] |
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::EnlargeOutputRequestedRegion | ( | DataObject * | ) | [protected, virtual] |
Give the process object a chance to indictate that it will produce more output than it was requested to produce. For example, many imaging filters must compute the entire output at once or can only produce output in complete slices. Such filters cannot handle smaller requested regions. These filters must provide an implementation of this method, setting the output requested region to the size they will produce. By default, a process object does not modify the size of the output requested region.
Reimplemented from itk::ProcessObject.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::GenerateData | ( | void | ) | [protected, virtual] |
A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.
Reimplemented from itk::ImageSource< TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::GenerateInputRequestedRegion | ( | ) | [protected, virtual] |
What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierachy. Up till now, the base assumption has been that the largest possible region will be requested of the input.
This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::GenerateOutputInformation | ( | ) | [protected, virtual] |
Generate the information decribing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.
Reimplemented from itk::ProcessObject.
| virtual void itk::ProcessObject::GenerateOutputRequestedRegion | ( | DataObject * | output | ) | [protected, virtual, inherited] |
Given one output whose requested region has been set, how should the requested regions for the remaining outputs of the process object be set? By default, all the outputs are set to the same requested region. If a filter needs to produce different requested regions for each output, for instance an image processing filter producing several outputs at different resolutions, then that filter may override this method and set the requested regions appropriatedly.
Note that a filter producing multiple outputs of different types is required to override this method. The default implementation can only correctly handle multiple outputs of the same type.
Reimplemented in itk::MultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::RecursiveMultiResolutionPyramidImageFilter< TInputImage, TOutputImage >, itk::watershed::BoundaryResolver< TPixelType, TDimension >, itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >, itk::watershed::Relabeler< TScalarType, TImageDimension >, itk::watershed::Segmenter< TInputImage >, itk::watershed::SegmentTreeGenerator< TScalarType >, itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>, and itk::watershed::SegmentTreeGenerator< InputImageType::PixelType >.
| virtual const bool& itk::ProcessObject::GetAbortGenerateData | ( | ) | [virtual, inherited] |
Get the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.
| Command* itk::Object::GetCommand | ( | unsigned long | tag | ) | [inherited] |
Get the command associated with the given tag. NOTE: This returns a pointer to a Command, but it is safe to asign this to a Command::Pointer. Since Command inherits from LightObject, at this point in the code, only a pointer or a reference to the Command can be used.
| bool itk::Object::GetDebug | ( | ) | const [inherited] |
Get the value of the debug flag.
| virtual double itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetErrorTolerance | ( | ) | [virtual] |
| static bool itk::Object::GetGlobalWarningDisplay | ( | ) | [static, inherited] |
| const DataObject* itk::ProcessObject::GetInput | ( | unsigned int | idx | ) | const [protected, inherited] |
| const InputImageType* itk::ImageToImageFilter< TInputImage , TClassifiedImage >::GetInput | ( | unsigned int | idx | ) | [inherited] |
Method used internally for getting an input.
Reimplemented from itk::ProcessObject.
| const InputImageType* itk::ImageToImageFilter< TInputImage , TClassifiedImage >::GetInput | ( | void | ) | [inherited] |
| DataObjectPointerArray& itk::ProcessObject::GetInputs | ( | ) | [inline, inherited] |
Return an array with all the inputs of this process object. This is useful for tracing back in the pipeline to construct graphs etc.
Definition at line 108 of file itkProcessObject.h.
| virtual unsigned int itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetMaximumNumberOfIterations | ( | ) | [virtual] |
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| const MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | const [inherited] |
| MetaDataDictionary& itk::Object::GetMetaDataDictionary | ( | void | ) | [inherited] |
| virtual std::vector<double> itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetMRFNeighborhoodWeight | ( | ) | [inline, virtual] |
Definition at line 293 of file itkMRFImageFilter.h.
| virtual unsigned long itk::Object::GetMTime | ( | ) | const [virtual, inherited] |
Return this objects modified time.
Reimplemented in itk::ImageRegistrationMethod< TFixedImage, TMovingImage >, itk::ImageToSpatialObjectRegistrationMethod< TFixedImage, TMovingSpatialObject >, itk::MultiResolutionImageRegistrationMethod< TFixedImage, TMovingImage >, itk::PointSetToImageRegistrationMethod< TFixedPointSet, TMovingImage >, itk::PointSetToPointSetRegistrationMethod< TFixedPointSet, TMovingPointSet >, itk::DeformationFieldSource< TOutputImage >, itk::InverseDeformationFieldImageFilter< TInputImage, TOutputImage >, itk::ResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::VectorResampleImageFilter< TInputImage, TOutputImage, TInterpolatorPrecisionType >, itk::BoundingBox< TPointIdentifier, VPointDimension, TCoordRep, TPointsContainer >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageSpatialObject< TDimension, TPixelType >, itk::MeshSpatialObject< TMesh >, itk::SceneSpatialObject< TSpaceDimension >, itk::SpatialObject< TDimension >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageSpatialObject< TDimension, unsigned char >, itk::SpatialObject< 3 >, and itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >.
Referenced by itk::SpatialObject< ::itk::GetMeshDimension< TMesh >::PointDimension >::GetObjectMTime().
| MultiThreader* itk::ProcessObject::GetMultiThreader | ( | ) | [inline, inherited] |
Return the multithreader used by this class.
Definition at line 284 of file itkProcessObject.h.
| virtual const char* itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetNameOfClass | ( | ) | const [virtual] |
Run-time type information (and related methods).
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| const NeighborhoodRadiusType itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetNeighborhoodRadius | ( | ) | const [inline] |
Get the neighborhood radius
Definition at line 277 of file itkMRFImageFilter.h.
| virtual unsigned int itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetNumberOfClasses | ( | ) | [virtual] |
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfInputs | ( | ) | const [inline, inherited] |
Get the size of the input vector. This is merely the size of the input vector, not the number of inputs that have valid DataObject's assigned. Use GetNumberOfValidRequiredInputs() to determine how many inputs are non-null.
Definition at line 118 of file itkProcessObject.h.
| virtual const unsigned int& itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetNumberOfIterations | ( | ) | [virtual] |
| DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfOutputs | ( | ) | const [inline, inherited] |
Definition at line 135 of file itkProcessObject.h.
| virtual const unsigned int& itk::ProcessObject::GetNumberOfRequiredInputs | ( | ) | [protected, virtual, inherited] |
| virtual const unsigned int& itk::ProcessObject::GetNumberOfRequiredOutputs | ( | ) | [protected, virtual, inherited] |
| virtual const int& itk::ProcessObject::GetNumberOfThreads | ( | ) | [virtual, inherited] |
| virtual DataObjectPointerArraySizeType itk::ProcessObject::GetNumberOfValidRequiredInputs | ( | ) | const [virtual, inherited] |
Get the number of valid inputs. This is the number of non-null entries in the input vector in the first NumberOfRequiredInputs slots. This method is used to determine whether the necessary required inputs have been set. Subclasses of ProcessObject may override this implementation if the required inputs are not the first slots in input vector.
Reimplemented in itk::MultiResolutionPDEDeformableRegistration< TFixedImage, TMovingImage, TDeformationField >, and itk::PDEDeformableRegistrationFilter< TFixedImage, TMovingImage, TDeformationField >.
| const DataObject* itk::ProcessObject::GetOutput | ( | unsigned int | idx | ) | const [protected, inherited] |
| OutputImageType* itk::ImageSource< TClassifiedImage >::GetOutput | ( | unsigned int | idx | ) | [inherited] |
Method used internally for getting an output.
Reimplemented from itk::ProcessObject.
| OutputImageType* itk::ImageSource< TClassifiedImage >::GetOutput | ( | void | ) | [inherited] |
Get the output data of this process object. The output of this function is not valid until an appropriate Update() method has been called, either explicitly or implicitly. Both the filter itself and the data object have Update() methods, and both methods update the data. Here are three ways to use GetOutput() and make sure the data is valid. In these examples, image is a pointer to some Image object, and the particular ProcessObjects involved are filters. The same examples apply to non-image (e.g. Mesh) data as well.
anotherFilter->SetInput( someFilter->GetOutput() ); anotherFilter->Update();
In this situation, someFilter and anotherFilter are said to constitute a pipeline.
image = someFilter->GetOutput(); image->Update();
someFilter->Update(); image = someFilter->GetOutput();
Note that Update() is not called automatically except within a pipeline as in the first example. When streaming (using a StreamingImageFilter) is activated, it may be more efficient to use a pipeline than to call Update() once for each filter in turn.
For an image, the data generated is for the requested Region, which can be set using ImageBase::SetRequestedRegion(). By default, the largest possible region is requested.
| DataObjectPointerArray& itk::ProcessObject::GetOutputs | ( | ) | [inline, inherited] |
Return an array with all the outputs of this process object. This is useful for tracing forward in the pipeline to contruct graphs etc.
Definition at line 133 of file itkProcessObject.h.
| virtual const float& itk::ProcessObject::GetProgress | ( | ) | [virtual, inherited] |
Get the execution progress of a process object. The progress is a floating number in [0,1] with 0 meaning no progress and 1 meaning the filter has completed execution.
| virtual int itk::LightObject::GetReferenceCount | ( | ) | const [inline, virtual, inherited] |
Gets the reference count on this object.
Definition at line 98 of file itkLightObject.h.
| virtual const bool& itk::ProcessObject::GetReleaseDataBeforeUpdateFlag | ( | ) | [virtual, inherited] |
| virtual bool itk::ProcessObject::GetReleaseDataFlag | ( | ) | const [virtual, inherited] |
| virtual double itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetSmoothingFactor | ( | ) | [virtual] |
| virtual const StopConditionType& itk::MRFImageFilter< TInputImage, TClassifiedImage >::GetStopCondition | ( | ) | [virtual] |
Get condition that stops the MRF filter (Number of Iterations / Error tolerance )
| static void itk::Object::GlobalWarningDisplayOff | ( | ) | [inline, static, inherited] |
| static void itk::Object::GlobalWarningDisplayOn | ( | ) | [inline, static, inherited] |
| virtual void itk::ImageSource< TClassifiedImage >::GraftNthOutput | ( | unsigned int | idx, | |
| DataObject * | output | |||
| ) | [virtual, inherited] |
Graft the specified data object onto this ProcessObject's idx'th output. This is similar to the GraftOutput method except it allows you to specify which output is affected. The specified index must be a valid output number (less than ProcessObject::GetNumberOfOutputs()). See the GraftOutput for general usage information.
| virtual void itk::ImageSource< TClassifiedImage >::GraftOutput | ( | DataObject * | output | ) | [virtual, inherited] |
Graft the specified DataObject onto this ProcessObject's output. This method grabs a handle to the specified DataObject's bulk data to used as its output's own bulk data. It also copies the region ivars (RequestedRegion, BufferedRegion, LargestPossibleRegion) and meta-data (Spacing, Origin) from the specified data object into this filter's output data object. Most importantly, however, it leaves the Source ivar untouched so the original pipeline routing is intact. This method is used when a process object is implemented using a mini-pipeline which is defined in its GenerateData() method. The usage is:
// setup the mini-pipeline to process the input to this filter firstFilterInMiniPipeline->SetInput( this->GetInput() ); // setup the mini-pipeline to calculate the correct regions // and write to the appropriate bulk data block lastFilterInMiniPipeline->GraftOutput( this->GetOutput() ); // execute the mini-pipeline lastFilterInMiniPipeline->Update(); // graft the mini-pipeline output back onto this filter's output. // this is needed to get the appropriate regions passed back. this->GraftOutput( lastFilterInMiniPipeline->GetOutput() );
For proper pipeline execution, a filter using a mini-pipeline must implement the GenerateInputRequestedRegion(), GenerateOutputRequestedRegion(), GenerateOutputInformation() and EnlargeOutputRequestedRegion() methods as necessary to reflect how the mini-pipeline will execute (in other words, the outer filter's pipeline mechanism must be consistent with what the mini-pipeline will do).
| bool itk::Object::HasObserver | ( | const EventObject & | event | ) | const [inherited] |
Return true if an observer is registered for this event.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | const [inherited] |
Call Execute on all the Commands observing this event id. The actions triggered by this call doesn't modify this object.
| void itk::Object::InvokeEvent | ( | const EventObject & | ) | [inherited] |
Call Execute on all the Commands observing this event id.
| itk::ImageToImageFilter< TInputImage , TClassifiedImage >::itkStaticConstMacro | ( | OutputImageDimension | , | |
| unsigned | int, | |||
| TClassifiedImage ::ImageDimension | ||||
| ) | [inherited] |
| itk::MRFImageFilter< TInputImage, TClassifiedImage >::itkStaticConstMacro | ( | ClassifiedImageDimension | , | |
| unsigned | int, | |||
| TClassifiedImage::ImageDimension | ||||
| ) |
Labelled Image dimension
| itk::MRFImageFilter< TInputImage, TClassifiedImage >::itkStaticConstMacro | ( | InputImageDimension | , | |
| unsigned | int, | |||
| TInputImage::ImageDimension | ||||
| ) |
Image dimension
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
| virtual DataObjectPointer itk::ImageSource< TClassifiedImage >::MakeOutput | ( | unsigned int | idx | ) | [virtual, inherited] |
Make a DataObject of the correct type to used as the specified output. Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a SmartPointer to a DataObject. If a subclass of ImageSource has multiple outputs of different types, then that class must provide an implementation of MakeOutput().
Reimplemented from itk::ProcessObject.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::MinimizeFunctional | ( | ) | [protected, virtual] |
Minimization algorithm to be used.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| virtual void itk::Object::Modified | ( | ) | const [virtual, inherited] |
Update the modification time for this object. Many filters rely on the modification time to determine if they need to recompute their data.
Reimplemented in itk::NormalizeImageFilter< TInputImage, TOutputImage >, itk::ImageAdaptor< TImage, TAccessor >, itk::ImageAdaptor< TImage, itk::Accessor::AsinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AbsPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::LogPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToPhasePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::Log10PixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AddPixelAccessor< TImage::PixelType > >, itk::ImageAdaptor< itk::VectorImage< TPixelType, Dimension >, itk::Accessor::VectorImageToImagePixelAccessor< TPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToVectorPixelAccessor< TImage::PixelType::ComponentType > >, itk::ImageAdaptor< TImage, itk::PixelAccessor< TInternalType, TExternalType > >, itk::ImageAdaptor< TImage, itk::Accessor::SqrtPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AcosPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToModulusPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ExpNegativePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::VectorToRGBPixelAccessor< TImage::PixelType::ValueType > >, itk::ImageAdaptor< TImage, itk::Accessor::TanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToRealPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::RGBToLuminancePixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::AtanPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::SinPixelAccessor< TImage::PixelType, TOutputPixelType > >, itk::ImageAdaptor< TImage, itk::Accessor::ComplexToImaginaryPixelAccessor< TImage::PixelType, TOutputPixelType > >, and itk::ImageAdaptor< TImage, itk::Accessor::CosPixelAccessor< TImage::PixelType, TOutputPixelType > >.
Referenced by itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::InsertNarrowBandNode(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetCenter(), itk::HistogramAlgorithmBase< TInputHistogram >::SetInputHistogram(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetMatrix(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBand(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandInnerRadius(), itk::NarrowBandImageFilterBase< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetNarrowBandTotalRadius(), itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetOffset(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetRealThresholds(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints1(), itk::CollidingFrontsImageFilter< TInputImage, TOutputImage >::SetSeedPoints2(), itk::NonUniformBSpline< TDimension >::SetSplineOrder(), itk::ThresholdLabelerImageFilter< TInputImage, TOutputImage >::SetThresholds(), itk::Statistics::GoodnessOfFitFunctionBase< TInputHistogram >::SetTotalObservedScale(), and itk::MatrixOffsetTransformBase< TScalarType, 3, 3 >::SetTranslation().
| static Pointer itk::MRFImageFilter< TInputImage, TClassifiedImage >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::Object.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::PopBackInput | ( | ) | [virtual, inherited] |
Reimplemented from itk::ProcessObject.
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::PopFrontInput | ( | ) | [virtual, inherited] |
Reimplemented from itk::ProcessObject.
| virtual void itk::ProcessObject::PrepareOutputs | ( | ) | [virtual, inherited] |
An opportunity to deallocate a ProcessObject's bulk data storage. Some filters may wish to reuse existing bulk data storage to avoid unnecessary deallocation/allocation sequences. The default implementation calls Initialize() on each output. DataObject::Initialize() frees its bulk data by default.
Reimplemented in itk::WatershedImageFilter< TInputImage >.
| void itk::LightObject::Print | ( | std::ostream & | os, | |
| Indent | indent = 0 | |||
| ) | const [inherited] |
Cause the object to print itself out.
Referenced by itk::WeakPointer< itk::ProcessObject >::Print().
| virtual void itk::LightObject::PrintHeader | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| bool itk::Object::PrintObservers | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, inherited] |
| void itk::MRFImageFilter< TInputImage, TClassifiedImage >::PrintSelf | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual] |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TClassifiedImage >.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| virtual void itk::LightObject::PrintTrailer | ( | std::ostream & | os, | |
| Indent | indent | |||
| ) | const [protected, virtual, inherited] |
| virtual void itk::ProcessObject::PropagateRequestedRegion | ( | DataObject * | output | ) | [virtual, inherited] |
Send the requested region information back up the pipeline (to the filters that preceed this one).
Reimplemented in itk::VTKImageImport< TOutputImage >.
| virtual void itk::ProcessObject::PropagateResetPipeline | ( | ) | [protected, virtual, inherited] |
Propagate a call to ResetPipeline() up the pipeline. Called only from DataObject.
| void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::PushBackInput | ( | const DataObject * | input | ) | [inline, protected, virtual, inherited] |
PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.
Reimplemented from itk::ProcessObject.
Definition at line 250 of file itkImageToImageFilter.h.
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::PushBackInput | ( | const InputImageType * | image | ) | [virtual, inherited] |
Push/Pop the input of this process object. These methods allow a filter to model its input vector as a queue or stack. These routines may not be appropriate for all filters, especially filters with different types of inputs. These routines follow the semantics of STL.
The routines are useful for applications that need to process "rolling" sets of images. For instance, if an application has 10 images and they need to run a filter on images 1, 2, 3, 4, then run the filter on images 2, 3, 4, 5, then run the filter on images 3, 4, 5, 6, the application can accomplish this by popping an input off the front of the input list and push a new image onto the back of input list. Again, this only makes sense for filters that single type of input.
Other uses are also possible. For a single input filter, pushing and popping inputs allow the application to temporarily replace an input to a filter.
| void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::PushFrontInput | ( | const DataObject * | input | ) | [inline, protected, virtual, inherited] |
PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.
Reimplemented from itk::ProcessObject.
Definition at line 252 of file itkImageToImageFilter.h.
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::PushFrontInput | ( | const InputImageType * | image | ) | [virtual, inherited] |
| virtual void itk::Object::Register | ( | ) | const [virtual, inherited] |
Increase the reference count (mark as used by another object).
Reimplemented from itk::LightObject.
| virtual void itk::ProcessObject::ReleaseDataBeforeUpdateFlagOff | ( | ) | [virtual, inherited] |
| virtual void itk::ProcessObject::ReleaseDataBeforeUpdateFlagOn | ( | ) | [virtual, inherited] |
| void itk::ProcessObject::ReleaseDataFlagOff | ( | ) | [inline, inherited] |
Definition at line 257 of file itkProcessObject.h.
| void itk::ProcessObject::ReleaseDataFlagOn | ( | ) | [inline, inherited] |
Definition at line 256 of file itkProcessObject.h.
| virtual void itk::ProcessObject::ReleaseInputs | ( | ) | [protected, virtual, inherited] |
A filter may need to release its input's bulk data after it has finished calculating a new output. The filter may need to release the inputs because the user has turned on the ReleaseDataFlag or it may need to release the inputs because the filter is an "in place" filter and it has overwritten its input with its output data. The implementation here simply checks the ReleaseDataFlag of the inputs. InPlaceImageFilter overrides this method so release the input it has overwritten.
Reimplemented in itk::InPlaceImageFilter< TInputImage, TOutputImage >, itk::InPlaceImageFilter< TDeformationField, TDeformationField >, itk::InPlaceImageFilter< TLabelImage, TOutputImage >, itk::InPlaceImageFilter< TInputImage >, itk::InPlaceImageFilter< TInputImage, TSparseOutputImage >, itk::InPlaceImageFilter< TFeatureImageType, Superclass::ImageType >, itk::InPlaceImageFilter< TInputImage1, TOutputImage >, itk::InPlaceImageFilter< TInputImage, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >, itk::InPlaceImageFilter< TInputImage1, itk::Functor::MakeJoin< TInputImage1, TInputImage2 >::ImageType >, itk::InPlaceImageFilter< TInputImageType, TSparseOutputImageType >, and itk::InPlaceImageFilter< TImage, TImage >.
| void itk::Object::RemoveAllObservers | ( | ) | [inherited] |
Remove all observers .
| virtual void itk::ProcessObject::RemoveInput | ( | DataObject * | input | ) | [protected, virtual, inherited] |
| void itk::Object::RemoveObserver | ( | unsigned long | tag | ) | [inherited] |
Remove the observer with this tag value.
| virtual void itk::ProcessObject::RemoveOutput | ( | DataObject * | output | ) | [protected, virtual, inherited] |
| virtual void itk::ProcessObject::ResetPipeline | ( | ) | [virtual, inherited] |
| virtual void itk::ProcessObject::RestoreInputReleaseDataFlags | ( | ) | [protected, virtual, inherited] |
Restore the cached input ReleaseDataFlags.
| virtual void itk::ProcessObject::SetAbortGenerateData | ( | bool | _arg | ) | [virtual, inherited] |
Set the AbortGenerateData flag for the process object. Process objects may handle premature termination of execution in different ways.
| void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetClassifier | ( | typename ClassifierType::Pointer | ptrToClassifier | ) |
Set the pointer to the classifer being used.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| void itk::Object::SetDebug | ( | bool | debugFlag | ) | const [inherited] |
Set the value of the debug flag. A non-zero value turns debugging on.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetErrorTolerance | ( | double | _arg | ) | [virtual] |
Set/Get the error tollerance level which is used as a threshold to quit the iterations
| static void itk::Object::SetGlobalWarningDisplay | ( | bool | flag | ) | [static, inherited] |
This is a global flag that controls whether any debug, warning or error messages are displayed.
Referenced by itk::Object::GlobalWarningDisplayOff(), and itk::Object::GlobalWarningDisplayOn().
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::SetInput | ( | unsigned | int, | |
| const TInputImage * | image | |||
| ) | [virtual, inherited] |
| virtual void itk::ImageToImageFilter< TInputImage , TClassifiedImage >::SetInput | ( | const InputImageType * | image | ) | [virtual, inherited] |
Set/Get the image input of this process object.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetMaximumNumberOfIterations | ( | unsigned int | _arg | ) | [virtual] |
Set/Get the number of iteration of the Iterated Conditional Mode (ICM) algorithm. A default value is set at 50 iterations.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| void itk::Object::SetMetaDataDictionary | ( | const MetaDataDictionary & | rhs | ) | [inherited] |
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetMRFNeighborhoodWeight | ( | std::vector< double > | BetaMatrix | ) | [virtual] |
Set the weighting parameters (used in MRF algorithms). This is a function allowing the users to set the weight matrix by providing a a 1D array of weights. The default implementation supports a 3 x 3 x 3 kernel. The labeler needs to be extended for a different kernel size.
| void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetNeighborhoodRadius | ( | const unsigned long * | radiusArray | ) |
| void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetNeighborhoodRadius | ( | const unsigned | long | ) |
Sets the radius for the neighborhood, calculates size from the radius, and allocates storage.
| void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetNeighborhoodRadius | ( | const NeighborhoodRadiusType & | ) |
Set the neighborhood radius
| virtual void itk::ProcessObject::SetNthInput | ( | unsigned int | num, | |
| DataObject * | input | |||
| ) | [protected, virtual, inherited] |
Protected methods for setting inputs. Subclasses make use of them for setting input.
Referenced by itk::watershed::BoundaryResolver< TPixelType, TDimension >::SetBoundaryA(), itk::watershed::BoundaryResolver< TPixelType, TDimension >::SetBoundaryB(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::SetEquivalencyTable(), itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetFeatureImage(), itk::NarrowBandLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType, itk::Image< TOutputPixelType,::itk::GetImageDimension< TInputImage >::ImageDimension > >::SetFeatureImage(), itk::WatershedImageFilter< TInputImage >::SetInput(), itk::watershed::SegmentTreeGenerator< InputImageType::PixelType >::SetInputEquivalencyTable(), itk::watershed::Segmenter< TInputImage >::SetInputImage(), itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>::SetInputImage(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::SetInputImage(), itk::watershed::SegmentTreeGenerator< InputImageType::PixelType >::SetInputSegmentTable(), itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>::SetInputSegmentTree(), itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType >::SetReferenceImage(), and itk::ChangeInformationImageFilter< TInputImage >::SetReferenceImage().
| virtual void itk::ProcessObject::SetNthOutput | ( | unsigned int | num, | |
| DataObject * | output | |||
| ) | [protected, virtual, inherited] |
Protected methods for setting outputs. Subclasses make use of them for getting output.
Referenced by itk::watershed::BoundaryResolver< TPixelType, TDimension >::BoundaryResolver(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::EquivalenceRelabeler(), itk::watershed::Segmenter< TInputImage >::SetBoundary(), itk::watershed::BoundaryResolver< TPixelType, TDimension >::SetEquivalencyTable(), itk::watershed::Segmenter< TInputImage >::SetOutputImage(), itk::watershed::Relabeler< InputImageType::PixelType, itkGetStaticConstMacro(ImageDimension)>::SetOutputImage(), itk::watershed::EquivalenceRelabeler< TScalarType, TImageDimension >::SetOutputImage(), and itk::watershed::Segmenter< TInputImage >::SetSegmentTable().
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetNumberOfClasses | ( | unsigned int | _arg | ) | [virtual] |
Set/Get the number of classes.
Reimplemented in itk::RGBGibbsPriorFilter< TInputImage, TClassifiedImage >.
| void itk::ProcessObject::SetNumberOfInputs | ( | unsigned int | num | ) | [protected, inherited] |
Called to allocate the input array. Copies old inputs.
| void itk::ProcessObject::SetNumberOfOutputs | ( | unsigned int | num | ) | [protected, inherited] |
Called to allocate the output array. Copies old outputs.
| virtual void itk::ProcessObject::SetNumberOfRequiredInputs | ( | unsigned int | _arg | ) | [protected, virtual, inherited] |
| virtual void itk::ProcessObject::SetNumberOfRequiredOutputs | ( | unsigned int | _arg | ) | [protected, virtual, inherited] |
| virtual void itk::ProcessObject::SetNumberOfThreads | ( | int | _arg | ) | [virtual, inherited] |
Get/Set the number of threads to create when executing.
| virtual void itk::ProcessObject::SetProgress | ( | float | _arg | ) | [virtual, inherited] |
Set the execution progress of a process object. The progress is a floating number in [0,1] with 0 meaning no progress and 1 meaning the filter has completed execution. The ProgressEvent is NOT invoked.
| virtual void itk::Object::SetReferenceCount | ( | int | ) | [virtual, inherited] |
Sets the reference count (use with care)
Reimplemented from itk::LightObject.
| virtual void itk::ProcessObject::SetReleaseDataBeforeUpdateFlag | ( | bool | _arg | ) | [virtual, inherited] |
Turn on/off the flags to control whether the bulk data belonging to the outputs of this ProcessObject are released/reallocated during an Update(). In limited memory scenarios, a user may want to force the elements of a pipeline to release any bulk data that is going to be regenerated anyway during an Update() in order to control peak memory allocation. Note that this flag is different from the ReleaseDataFlag. ReleaseDataFlag manages the deallocation of a ProcessObject's bulk output data once that data has been consumed by a downstream ProcessObject. The ReleaseDataBeforeUpdateFlag manages the deallocation/reallocation of bulk data during a pipeline update to control peak memory utilization. Default value is on.
| virtual void itk::ProcessObject::SetReleaseDataFlag | ( | bool | flag | ) | [virtual, inherited] |
Turn on/off the flags to control whether the bulk data belonging to the outputs of this ProcessObject are released after being used by a downstream ProcessObject. Default value is off. Another options for controlling memory utilization is the ReleaseDataBeforeUpdateFlag.
| virtual void itk::MRFImageFilter< TInputImage, TClassifiedImage >::SetSmoothingFactor | ( | double | _arg | ) | [virtual] |
Set/Get the degree of smoothing desired
| virtual int itk::ImageSource< TClassifiedImage >::SplitRequestedRegion | ( | int | i, | |
| int | num, | |||
| OutputImageRegionType & | splitRegion | |||
| ) | [protected, virtual, inherited] |
Split the output's RequestedRegion into "num" pieces, returning region "i" as "splitRegion". This method is called "num" times. The regions must not overlap. The method returns the number of pieces that the routine is capable of splitting the output RequestedRegion, i.e. return value is less than or equal to "num".
| virtual void itk::ImageSource< TClassifiedImage >::ThreadedGenerateData | ( | const OutputImageRegionType & | outputRegionForThread, | |
| int | threadId | |||
| ) | [protected, virtual, inherited] |
If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).
| static ITK_THREAD_RETURN_TYPE itk::ImageSource< TClassifiedImage >::ThreaderCallback | ( | void * | arg | ) | [static, protected, inherited] |
Static function used as a "callback" by the MultiThreader. The threading library will call this routine for each thread, which will delegate the control to ThreadedGenerateData().
| virtual void itk::Object::UnRegister | ( | ) | const [virtual, inherited] |
Decrease the reference count (release by another object).
Reimplemented from itk::LightObject.
| virtual void itk::ProcessObject::Update | ( | ) | [virtual, inherited] |
Bring this filter up-to-date. Update() checks modified times against last execution times, and re-executes objects if necessary. A side effect of this method is that the whole pipeline may execute in order to bring this filter up-to-date. This method updates the currently prescribed requested region. If no requested region has been set on the output, then the requested region will be set to the largest possible region. Once the requested region is set, Update() will make sure the specified requested region is up-to-date. This is a confusing side effect to users who are just calling Update() on a filter. A first call to Update() will cause the largest possible region to be updated. A second call to Update() will update that same region. If a modification to the upstream pipeline cause a filter to have a different largest possible region, this second call to Update() will not cause the output requested region to be reset to the new largest possible region. Instead, the output requested region will be the same as the last time Update() was called. To have a filter always to produce its largest possible region, users should call UpdateLargestPossibleRegion() instead.
Reimplemented in itk::CoreAtomImageToUnaryCorrespondenceMatrixProcess< TSourceImage >, itk::MedialNodePairCorrespondenceProcess< TSourceImage >, itk::MedialNodeTripletCorrespondenceProcess< TSourceImage >, itk::CoreAtomImageToDistanceMatrixProcess< TSourceImage >, itk::ImageFileWriter< TInputImage >, and itk::ImageSeriesWriter< TInputImage, TOutputImage >.
| virtual void itk::ProcessObject::UpdateLargestPossibleRegion | ( | ) | [virtual, inherited] |
Like Update(), but sets the output requested region to the largest possible region for the output. This is the method users should call if they want the entire dataset to be processed. If a user wants to update the same output region as a previous call to Update() or a previous call to UpdateLargestPossibleRegion(), then they should call the method Update().
| virtual void itk::ProcessObject::UpdateOutputData | ( | DataObject * | output | ) | [virtual, inherited] |
Actually generate new output
Reimplemented in itk::StreamingImageFilter< TInputImage, TOutputImage >.
| virtual void itk::ProcessObject::UpdateOutputInformation | ( | ) | [virtual, inherited] |
Update the information decribing the output data. This method transverses up the pipeline gathering modified time information. On the way back down the pipeline, this method calls GenerateOutputInformation() to set any necessary information about the output data objects. For instance, a filter that shrinks an image will need to provide an implementation for GenerateOutputInformation() that changes the spacing of the pixels. Such filters should call their superclass' implementation of GenerateOutputInformation prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.
Reimplemented in itk::watershed::Segmenter< TInputImage >, and itk::VTKImageImport< TOutputImage >.
| void itk::ProcessObject::UpdateProgress | ( | float | amount | ) | [inherited] |
Update the progress of the process object.
Sets the Progress ivar to amount and invokes any observers for the ProgressEvent. The parameter amount should be in [0,1] and is the cumulative (not incremental) progress.
TimeStamp itk::ProcessObject::m_OutputInformationMTime [protected, inherited] |
Time when GenerateOutputInformation was last called.
Definition at line 431 of file itkProcessObject.h.
volatile int itk::LightObject::m_ReferenceCount [mutable, protected, inherited] |
Number of uses of this object by other objects.
Definition at line 119 of file itkLightObject.h.
SimpleFastMutexLock itk::LightObject::m_ReferenceCountLock [mutable, protected, inherited] |
Mutex lock to protect modification to the reference count
Definition at line 122 of file itkLightObject.h.
bool itk::ProcessObject::m_Updating [protected, inherited] |
This flag indicates when the pipeline is executing. It prevents infinite recursion when pipelines have loops.
Definition at line 428 of file itkProcessObject.h.
1.5.1 written by Dimitri van Heesch,
© 1997-2000