Class that defines how to read MINC2 file format. Note,like ITK, MINC2 is N dimensional and dimensions can be submitted in any arbitrary order. Here we make sure the dimensions are ordered as xspace, yspace, zspace, time and vector_dimension and so on or xfrequencey, yfrequency, zfrequency, tfrequency and vector_dimension and so on NOTE** This class only reads the regularly sampled dimensions as I am not sure how to deal with "iregularly sampled" dimensions yet! More...

#include <itkMINC2ImageIO.h>

Inheritance diagram for itk::MINC2ImageIO:

Collaboration diagram for itk::MINC2ImageIO:

List of all members.

Public Types
typedef Matrix< float, 3, 3 >	MatrixType
typedef SmartPointer< Self >	Pointer
typedef MINC2ImageIO	Self
typedef ImageIOBase	Superclass
Public Member Functions
virtual bool	CanReadFile (const char *)
virtual bool	CanWriteFile (const char *)
virtual ::itk::LightObject::Pointer	CreateAnother (void) const
char *	GetDimensionOrder ()
virtual const char *	GetNameOfClass () const
virtual void	Read (void *buffer)
virtual void	ReadImageInformation ()
void	SetDimensionOrder (char *dimorder)
virtual void	Write (const void *buffer)
virtual void	WriteImageInformation ()
void	XYZFromDirectionCosines (midimhandle_t hdims, int dim_indices, unsigned int *number_of_components)
Static Public Member Functions
static Pointer	New ()
Protected Member Functions
int	CheckDimensionOrder (char *userdimorder)
virtual char *	GetDimensionName (unsigned int i)
	MINC2ImageIO ()
void	PrintSelf (std::ostream &os, Indent indent) const
virtual void	SetDimensionName (unsigned int i, char *name)
void	WriteSlice (std::string &fileName, const void *buffer)
	~MINC2ImageIO ()
Protected Attributes
int	m_Complex
int *	m_DimensionIndices
char **	m_DimensionName
char *	m_DimensionOrder
unsigned int *	m_DimensionSize
double *	m_DimensionStart
double *	m_DimensionStep
MatrixType	m_DirectionCosines
unsigned int	m_NDims
double	m_OriginalStart [3]
double	m_Scale
double	m_Shift
Private Member Functions
	MINC2ImageIO (const Self &)
void	operator= (const Self &)
void	SetSliceScalingFromGlobalScaling (mihandle_t volume)
void	SetSliceScalingFromLocalScaling (mihandle_t volume)

Detailed Description

Class that defines how to read MINC2 file format. Note,like ITK, MINC2 is N dimensional and dimensions can be submitted in any arbitrary order. Here we make sure the dimensions are ordered as xspace, yspace, zspace, time and vector_dimension and so on or xfrequencey, yfrequency, zfrequency, tfrequency and vector_dimension and so on NOTE** This class only reads the regularly sampled dimensions as I am not sure how to deal with "iregularly sampled" dimensions yet!

Author:: Leila Baghdadi This code was contributed in the Insight Journal paper: "MINC2.0 IO Support for ITK" by Baghdadi L. http://hdl.handle.net/1926/191 http://www.insight-journal.org/browse/publication/88

Definition at line 61 of file itkMINC2ImageIO.h.

Member Typedef Documentation

typedef Matrix< float, 3, 3 > itk::MINC2ImageIO::MatrixType

Definition at line 68 of file itkMINC2ImageIO.h.

typedef SmartPointer< Self > itk::MINC2ImageIO::Pointer

Reimplemented from itk::ImageIOBase.

Definition at line 67 of file itkMINC2ImageIO.h.

typedef MINC2ImageIO itk::MINC2ImageIO::Self

Standard class typedefs.

Reimplemented from itk::ImageIOBase.

Definition at line 65 of file itkMINC2ImageIO.h.

typedef ImageIOBase itk::MINC2ImageIO::Superclass

Reimplemented from itk::ImageIOBase.

Definition at line 66 of file itkMINC2ImageIO.h.

Constructor & Destructor Documentation

itk::MINC2ImageIO::MINC2ImageIO ( ) [protected]

itk::MINC2ImageIO::~MINC2ImageIO ( ) [protected]

itk::MINC2ImageIO::MINC2ImageIO ( const Self & ) [private]

Member Function Documentation

virtual bool itk::MINC2ImageIO::CanReadFile ( const char * ) [virtual]

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

virtual bool itk::MINC2ImageIO::CanWriteFile ( const char * ) [virtual]

Determine the file type. Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

int itk::MINC2ImageIO::CheckDimensionOrder ( char * userdimorder ) [protected]

virtual::itk::LightObject::Pointer itk::MINC2ImageIO::CreateAnother ( void ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

virtual char* itk::MINC2ImageIO::GetDimensionName ( unsigned int i ) [inline, protected, virtual]

Definition at line 121 of file itkMINC2ImageIO.h.

char* itk::MINC2ImageIO::GetDimensionOrder ( ) [inline]

Definition at line 102 of file itkMINC2ImageIO.h.

virtual const char* itk::MINC2ImageIO::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::ImageIOBase.

static Pointer itk::MINC2ImageIO::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::LightProcessObject.

void itk::MINC2ImageIO::operator= ( const Self & ) [private]

This method causes the filter to generate its output.

Reimplemented from itk::ImageIOBase.

void itk::MINC2ImageIO::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const `[protected, virtual]`

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageIOBase.

virtual void itk::MINC2ImageIO::Read ( void * buffer ) [virtual]

Reads the data from disk into the memory buffer provided.

Implements itk::ImageIOBase.

virtual void itk::MINC2ImageIO::ReadImageInformation ( ) [virtual]

Set the spacing and dimension information for the set filename.

Implements itk::ImageIOBase.