ITK
4.1.0
Insight Segmentation and Registration Toolkit
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#include <itkGrayscaleGeodesicErodeImageFilter.h>
geodesic gray scale erosion of an image
Geodesic erosion operates on a "marker" image and a "mask" image. The marker image is eroded using an elementary structuring element (neighborhood of radius one using only the face connected neighbors). The resulting image is then compared with the mask image. The output image is the pixelwise maximum of the eroded marker image and the mask image.
Geodesic erosion is run either one iteration or until convergence. In the convergence case, the filter is equivalent to "reconstruction by erosion". This filter is implemented to handle both scenarios. The one iteration case is multi-threaded. The convergence case is delegated to another instance of the same filter (but configured to run a single iteration).
The marker image must be greater than or equal to the mask image (on a pixel by pixel basis).
Geodesic morphology is described in Chapter 6 of Pierre Soille's book "Morphological Image Analysis: Principles and Applications", Second Edition, Springer, 2003.
A noniterative version of this algorithm can be found in the ReconstructionByErosionImageFilter. This noniterative solution is much faster than the implementation provided here. All ITK filters that previously used GrayscaleGeodesicErodeImageFilter as part of their implementation have been converted to use the ReconstructionByErosionImageFilter. The GrayscaleGeodesicErodeImageFilter is maintained for backward compatibility.
Definition at line 65 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef SmartPointer< const Self > itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::ConstPointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 73 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MarkerImageType::ConstPointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MarkerImageConstPointer |
Definition at line 78 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MarkerImageType::PixelType itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MarkerImagePixelType |
Definition at line 80 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MarkerImageType::Pointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MarkerImagePointer |
Definition at line 77 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MarkerImageType::RegionType itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MarkerImageRegionType |
Definition at line 79 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef TInputImage itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MarkerImageType |
Some convenient typedefs.
Definition at line 76 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MaskImageType::ConstPointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MaskImageConstPointer |
Definition at line 83 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MaskImageType::PixelType itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MaskImagePixelType |
Definition at line 85 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MaskImageType::Pointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MaskImagePointer |
Definition at line 82 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef MaskImageType::RegionType itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MaskImageRegionType |
Definition at line 84 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef TInputImage itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MaskImageType |
Definition at line 81 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef OutputImageType::ConstPointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::OutputImageConstPointer |
Definition at line 88 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef OutputImageType::PixelType itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::OutputImagePixelType |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 90 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef OutputImageType::Pointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::OutputImagePointer |
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 87 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef OutputImageType::RegionType itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::OutputImageRegionType |
Superclass typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 89 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef TOutputImage itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::OutputImageType |
Some convenient typedefs.
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 86 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef SmartPointer< Self > itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::Pointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 72 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef GrayscaleGeodesicErodeImageFilter itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::Self |
Standard class typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 70 of file itkGrayscaleGeodesicErodeImageFilter.h.
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::Superclass |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 71 of file itkGrayscaleGeodesicErodeImageFilter.h.
itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GrayscaleGeodesicErodeImageFilter | ( | ) | [protected] |
End concept checking
itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::~GrayscaleGeodesicErodeImageFilter | ( | ) | [inline, protected] |
End concept checking
Definition at line 158 of file itkGrayscaleGeodesicErodeImageFilter.h.
itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GrayscaleGeodesicErodeImageFilter | ( | const Self & | ) | [private] |
virtual::itk::LightObject::Pointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::CreateAnother | ( | void | ) | const [virtual] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::EnlargeOutputRequestedRegion | ( | DataObject * | ) | [protected, virtual] |
This filter will enlarge the output requested region to produce all of the output if the filter is configured to run to convergence.
Reimplemented from itk::ProcessObject.
virtual void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::FullyConnectedOff | ( | ) | [virtual] |
Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
virtual void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::FullyConnectedOn | ( | ) | [virtual] |
Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GenerateData | ( | ) | [protected, virtual] |
Single-threaded version of GenerateData. This version is used when the filter is configured to run to convergence. This method may delegate to the multithreaded version if the filter is configured to run a single iteration. Otherwise, it will delegate to a separate instance to run each iteration until the filter converges.
Reimplemented from itk::ImageSource< TOutputImage >.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GenerateInputRequestedRegion | ( | ) | [protected, virtual] |
GrayscaleGeodesicErodeImageFilter needs to request enough of the marker image to account for the elementary structuring element. The mask image does not need to be padded. Depending on whether the filter is configured to run a single iteration or until convergence, this method may request all of the marker and mask image be provided.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
virtual const bool& itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GetFullyConnected | ( | ) | [virtual] |
Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
const MarkerImageType* itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GetMarkerImage | ( | ) |
const MaskImageType* itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GetMaskImage | ( | ) |
virtual const char* itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GetNameOfClass | ( | ) | const [virtual] |
Runtime information support.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
virtual unsigned long itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GetNumberOfIterationsUsed | ( | ) | const [virtual] |
Get the number of iterations used to produce the current output.
virtual bool itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::GetRunOneIteration | ( | ) | const [virtual] |
Set/Get whether the filter should run one iteration or until convergence. When run to convergence, this filter is equivalent to "reconstruction by erosion". Default is off.
static Pointer itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::New | ( | ) | [static] |
Standard New method.
Reimplemented from itk::Object.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::operator= | ( | const Self & | ) | [private] |
PushBackInput(), PushFronInput() in the public section force the input to be the type expected by an ImageToImageFilter. However, these methods end of "hiding" the versions from the superclass (ProcessObject) whose arguments are DataObjects. Here, we re-expose the versions from ProcessObject to avoid warnings about hiding methods from the superclass.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::PrintSelf | ( | std::ostream & | os, |
Indent | indent | ||
) | const [protected, virtual] |
End concept checking
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
virtual void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::RunOneIterationOff | ( | ) | [virtual] |
Set/Get whether the filter should run one iteration or until convergence. When run to convergence, this filter is equivalent to "reconstruction by erosion". Default is off.
virtual void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::RunOneIterationOn | ( | ) | [virtual] |
Set/Get whether the filter should run one iteration or until convergence. When run to convergence, this filter is equivalent to "reconstruction by erosion". Default is off.
virtual void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::SetFullyConnected | ( | bool | _arg | ) | [virtual] |
Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::SetMarkerImage | ( | const MarkerImageType * | ) |
Set/Get the marker image. The marker image must be pixelwise greater than or equal to the mask image. The marker image the image that is eroded by this filter.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::SetMaskImage | ( | const MaskImageType * | ) |
Set/Get the mask image. The mask image is used to "mask" the eroded marker image. The mask operation is a pixelwise maximum.
virtual void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::SetRunOneIteration | ( | bool | _arg | ) | [virtual] |
Set/Get whether the filter should run one iteration or until convergence. When run to convergence, this filter is equivalent to "reconstruction by erosion". Default is off.
void itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::ThreadedGenerateData | ( | const OutputImageRegionType & | outputRegionForThread, |
ThreadIdType | threadId | ||
) | [protected, virtual] |
Multi-thread version GenerateData. This version is used when the filter is configured to run a single iteration. When the filter is configured to run to convergence, the GenerateData() method is called.
Reimplemented from itk::ImageSource< TOutputImage >.
itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::typedef | ( | Concept::SameDimension< MarkerImageDimension, OutputImageDimension > | ) |
Begin concept checking This class requires SameDimensionCheck in the form of ( Concept::SameDimension< MarkerImageDimension, OutputImageDimension > )
itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::typedef | ( | Concept::Comparable< MarkerImagePixelType > | ) |
This class requires InputComparableCheck in the form of ( Concept::Comparable< MarkerImagePixelType > )
itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::typedef | ( | Concept::Convertible< MarkerImagePixelType, OutputImagePixelType > | ) |
This class requires InputConvertibleToOutputCheck in the form of ( Concept::Convertible< MarkerImagePixelType, OutputImagePixelType > )
bool itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::m_FullyConnected [private] |
Definition at line 198 of file itkGrayscaleGeodesicErodeImageFilter.h.
unsigned long itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::m_NumberOfIterationsUsed [private] |
Definition at line 197 of file itkGrayscaleGeodesicErodeImageFilter.h.
bool itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::m_RunOneIteration [private] |
Definition at line 196 of file itkGrayscaleGeodesicErodeImageFilter.h.
const unsigned int itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MarkerImageDimension = TInputImage::ImageDimension [static] |
ImageDimension constants
Definition at line 94 of file itkGrayscaleGeodesicErodeImageFilter.h.
const unsigned int itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::MaskImageDimension = TInputImage::ImageDimension [static] |
ImageDimension constants
Definition at line 96 of file itkGrayscaleGeodesicErodeImageFilter.h.
const unsigned int itk::GrayscaleGeodesicErodeImageFilter< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension [static] |
ImageDimension constants
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 98 of file itkGrayscaleGeodesicErodeImageFilter.h.