ITK  4.1.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Private Member Functions | Private Attributes
itk::HDF5ImageIO Class Reference

#include <itkHDF5ImageIO.h>

+ Inheritance diagram for itk::HDF5ImageIO:
+ Collaboration diagram for itk::HDF5ImageIO:

List of all members.

Public Types

typedef SmartPointer< SelfPointer
typedef HDF5ImageIO Self
typedef ImageIOBase Superclass

Public Member Functions

virtual bool CanReadFile (const char *FileNameToRead)
virtual bool CanWriteFile (const char *FileNameToWrite)
virtual ::itk::LightObject::Pointer CreateAnother (void) const
virtual const char * GetNameOfClass () const
virtual void Read (void *buffer)
virtual void ReadImageInformation ()
virtual void Write (const void *buffer)
virtual void WriteImageInformation ()

Static Public Member Functions

static Pointer New ()

Protected Member Functions

virtual SizeType GetHeaderSize (void) const
 HDF5ImageIO ()
void PrintSelf (std::ostream &os, Indent indent) const
 ~HDF5ImageIO ()

Private Member Functions

 HDF5ImageIO (const Self &)
void operator= (const Self &)
std::vector< std::vector
< double > > 
ReadDirections (const std::string &path)
template<typename TScalar >
TScalar ReadScalar (const std::string &DataSetName)
std::string ReadString (const std::string &path)
template<typename TScalar >
std::vector< TScalar > ReadVector (const std::string &DataSetName)
void SetupStreaming (H5::DataSpace *imageSpace, H5::DataSpace *slabSpace)
template<typename TType >
void StoreMetaData (MetaDataDictionary *metaDict, const std::string &HDFPath, const std::string &name, unsigned long numElements)
void WriteDirections (const std::string &path, const std::vector< std::vector< double > > &dir)
template<typename TType >
bool WriteMeta (const std::string &name, MetaDataObjectBase *metaObj)
template<typename TType >
bool WriteMetaArray (const std::string &name, MetaDataObjectBase *metaObj)
void WriteScalar (const std::string &path, const bool &value)
void WriteScalar (const std::string &path, const long &value)
void WriteScalar (const std::string &path, const unsigned long &value)
template<typename TScalar >
void WriteScalar (const std::string &path, const TScalar &value)
void WriteString (const std::string &path, const std::string &value)
void WriteString (const std::string &path, const char *s)
template<typename TScalar >
void WriteVector (const std::string &path, const std::vector< TScalar > &vec)

Private Attributes

H5::H5File * m_H5File
bool m_ImageInformationWritten
H5::DataSet * m_VoxelDataSet

Detailed Description

Class that defines how to read HDF5 file format. HDF5 IMAGE FILE FORMAT - As much information as I can determine from sourceforge.net/projects/HDF5lib.

Author:
Kent Williams

HDF5 paths for elements in file

Definition at line 85 of file itkHDF5ImageIO.h.


Member Typedef Documentation

Reimplemented from itk::StreamingImageIOBase.

Definition at line 91 of file itkHDF5ImageIO.h.

Standard class typedefs.

Reimplemented from itk::StreamingImageIOBase.

Definition at line 89 of file itkHDF5ImageIO.h.

Reimplemented from itk::StreamingImageIOBase.

Definition at line 90 of file itkHDF5ImageIO.h.


Constructor & Destructor Documentation

itk::HDF5ImageIO::HDF5ImageIO ( const Self ) [private]

Member Function Documentation

virtual bool itk::HDF5ImageIO::CanReadFile ( const char *  FileNameToRead) [virtual]

Determine if the file can be read with this ImageIO implementation.

Author:
Hans J Johnson
Parameters:
FileNameToReadThe name of the file to test for reading.
Postcondition:
Sets classes ImageIOBase::m_FileName variable to be FileNameToWrite
Returns:
Returns true if this ImageIO can read the file specified.

Implements itk::ImageIOBase.

virtual bool itk::HDF5ImageIO::CanWriteFile ( const char *  FileNameToWrite) [virtual]

Determine if the file can be written with this ImageIO implementation.

Parameters:
FileNameToWriteThe name of the file to test for writing.
Author:
Hans J. Johnson
Postcondition:
Sets classes ImageIOBase::m_FileName variable to be FileNameToWrite
Returns:
Returns true if this ImageIO can write the file specified.

Implements itk::ImageIOBase.

virtual::itk::LightObject::Pointer itk::HDF5ImageIO::CreateAnother ( void  ) const [virtual]

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LightProcessObject.

virtual SizeType itk::HDF5ImageIO::GetHeaderSize ( void  ) const [protected, virtual]

Returns the size of the header in the file.

Implements itk::StreamingImageIOBase.

virtual const char* itk::HDF5ImageIO::GetNameOfClass ( ) const [virtual]

Run-time type information (and related methods).

Reimplemented from itk::StreamingImageIOBase.

static Pointer itk::HDF5ImageIO::New ( ) [static]

Method for creation through the object factory.

Reimplemented from itk::LightProcessObject.

void itk::HDF5ImageIO::operator= ( const Self ) [private]

This method causes the filter to generate its output.

Reimplemented from itk::StreamingImageIOBase.

void itk::HDF5ImageIO::PrintSelf ( std::ostream &  os,
Indent  indent 
) const [protected, virtual]

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::StreamingImageIOBase.

virtual void itk::HDF5ImageIO::Read ( void *  buffer) [virtual]

Reads the data from disk into the memory buffer provided.

Implements itk::ImageIOBase.

std::vector<std::vector<double> > itk::HDF5ImageIO::ReadDirections ( const std::string &  path) [private]
virtual void itk::HDF5ImageIO::ReadImageInformation ( ) [virtual]

Set the spacing and dimension information for the set filename.

Implements itk::ImageIOBase.

template<typename TScalar >
TScalar itk::HDF5ImageIO::ReadScalar ( const std::string &  DataSetName) [private]
std::string itk::HDF5ImageIO::ReadString ( const std::string &  path) [private]
template<typename TScalar >
std::vector<TScalar> itk::HDF5ImageIO::ReadVector ( const std::string &  DataSetName) [private]
void itk::HDF5ImageIO::SetupStreaming ( H5::DataSpace *  imageSpace,
H5::DataSpace *  slabSpace 
) [private]
template<typename TType >
void itk::HDF5ImageIO::StoreMetaData ( MetaDataDictionary metaDict,
const std::string &  HDFPath,
const std::string &  name,
unsigned long  numElements 
) [private]
virtual void itk::HDF5ImageIO::Write ( const void *  buffer) [virtual]

Writes the data to disk from the memory buffer provided. Make sure that the IORegions has been set properly.

Implements itk::ImageIOBase.

void itk::HDF5ImageIO::WriteDirections ( const std::string &  path,
const std::vector< std::vector< double > > &  dir 
) [private]
virtual void itk::HDF5ImageIO::WriteImageInformation ( ) [virtual]

Set the spacing and dimension information for the set filename.

Implements itk::ImageIOBase.

template<typename TType >
bool itk::HDF5ImageIO::WriteMeta ( const std::string &  name,
MetaDataObjectBase metaObj 
) [private]
template<typename TType >
bool itk::HDF5ImageIO::WriteMetaArray ( const std::string &  name,
MetaDataObjectBase metaObj 
) [private]
void itk::HDF5ImageIO::WriteScalar ( const std::string &  path,
const bool &  value 
) [private]
void itk::HDF5ImageIO::WriteScalar ( const std::string &  path,
const long &  value 
) [private]
void itk::HDF5ImageIO::WriteScalar ( const std::string &  path,
const unsigned long &  value 
) [private]
template<typename TScalar >
void itk::HDF5ImageIO::WriteScalar ( const std::string &  path,
const TScalar &  value 
) [private]
void itk::HDF5ImageIO::WriteString ( const std::string &  path,
const std::string &  value 
) [private]
void itk::HDF5ImageIO::WriteString ( const std::string &  path,
const char *  s 
) [private]
template<typename TScalar >
void itk::HDF5ImageIO::WriteVector ( const std::string &  path,
const std::vector< TScalar > &  vec 
) [private]

Member Data Documentation

H5::H5File* itk::HDF5ImageIO::m_H5File [private]

Definition at line 189 of file itkHDF5ImageIO.h.

Definition at line 191 of file itkHDF5ImageIO.h.

H5::DataSet* itk::HDF5ImageIO::m_VoxelDataSet [private]

Definition at line 190 of file itkHDF5ImageIO.h.


The documentation for this class was generated from the following file: