ITK
4.1.0
Insight Segmentation and Registration Toolkit
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#include <itkKappaSigmaThresholdImageFilter.h>
Threshold an image using multiple Otsu Thresholds.
This filter creates a labeled image that separates the input image into various classes. The filter computes the thresholds using the MaximumEntropyThresholdImageCalculator and applies those thesholds to the input image using the ThresholdLabelerImageFilter. The NumberOfHistogramBins and NumberOfThresholds can be set for the Calculator. The LabelOffset can be set for the ThresholdLabelerImageFilter.
This class was taken from the Insight Journal paper: http://hdl.handle.net/1926/367
Definition at line 53 of file itkKappaSigmaThresholdImageFilter.h.
typedef KappaSigmaThresholdImageCalculator< TInputImage, TMaskImage > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::CalculatorType [protected] |
Definition at line 160 of file itkKappaSigmaThresholdImageFilter.h.
typedef SmartPointer< const Self > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::ConstPointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 61 of file itkKappaSigmaThresholdImageFilter.h.
typedef TInputImage::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImagePointer |
Image related typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 79 of file itkKappaSigmaThresholdImageFilter.h.
typedef TInputImage::RegionType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImageRegionType [protected] |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 155 of file itkKappaSigmaThresholdImageFilter.h.
typedef TInputImage itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImageType |
Standard image type within this class.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 67 of file itkKappaSigmaThresholdImageFilter.h.
typedef TInputImage::IndexType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputIndexType [protected] |
Definition at line 154 of file itkKappaSigmaThresholdImageFilter.h.
typedef TInputImage::PixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputPixelType |
Image pixel value typedef.
Definition at line 74 of file itkKappaSigmaThresholdImageFilter.h.
typedef TInputImage::SizeType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputSizeType [protected] |
Definition at line 153 of file itkKappaSigmaThresholdImageFilter.h.
typedef TMaskImage::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::MaskImagePointer |
Definition at line 81 of file itkKappaSigmaThresholdImageFilter.h.
typedef TMaskImage itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::MaskImageType |
Definition at line 71 of file itkKappaSigmaThresholdImageFilter.h.
typedef TMaskImage::PixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::MaskPixelType |
Definition at line 76 of file itkKappaSigmaThresholdImageFilter.h.
typedef TOutputImage::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputImagePointer |
Reimplemented from itk::ImageSource< TOutputImage >.
Definition at line 80 of file itkKappaSigmaThresholdImageFilter.h.
typedef TOutputImage::RegionType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputImageRegionType [protected] |
Superclass typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 158 of file itkKappaSigmaThresholdImageFilter.h.
typedef TOutputImage::IndexType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputIndexType [protected] |
Definition at line 157 of file itkKappaSigmaThresholdImageFilter.h.
typedef TOutputImage::PixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputPixelType |
Definition at line 75 of file itkKappaSigmaThresholdImageFilter.h.
typedef TOutputImage::SizeType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputSizeType [protected] |
Definition at line 156 of file itkKappaSigmaThresholdImageFilter.h.
typedef SmartPointer< Self > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::Pointer |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 60 of file itkKappaSigmaThresholdImageFilter.h.
typedef KappaSigmaThresholdImageFilter itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::Self |
Standard Self typedef
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 58 of file itkKappaSigmaThresholdImageFilter.h.
typedef ImageToImageFilter< TInputImage, TOutputImage > itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::Superclass |
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 59 of file itkKappaSigmaThresholdImageFilter.h.
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::KappaSigmaThresholdImageFilter | ( | ) | [protected] |
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::~KappaSigmaThresholdImageFilter | ( | ) | [inline, protected] |
Definition at line 146 of file itkKappaSigmaThresholdImageFilter.h.
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::KappaSigmaThresholdImageFilter | ( | const Self & | ) | [private] |
Image related typedefs.
virtual::itk::LightObject::Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::CreateAnother | ( | void | ) | const [virtual] |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GenerateData | ( | ) | [protected, virtual] |
A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.
Reimplemented from itk::ImageSource< TOutputImage >.
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GenerateInputRequestedRegion | ( | ) | [protected, virtual] |
What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierachy. Up till now, the base assumption has been that the largest possible region will be requested of the input.
This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
virtual OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetInsideValue | ( | ) | const [virtual] |
Get the "inside" pixel value.
const MaskImageType* itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetMaskImage | ( | ) | const [inline] |
Get the mask image
Definition at line 127 of file itkKappaSigmaThresholdImageFilter.h.
References itk::ProcessObject::GetInput().
virtual MaskPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetMaskValue | ( | ) | const [virtual] |
virtual const char* itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetNameOfClass | ( | ) | const [virtual] |
Runtime information support.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
virtual unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetNumberOfIterations | ( | ) | const [virtual] |
virtual OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetOutsideValue | ( | ) | const [virtual] |
Get the "outside" pixel value.
virtual double itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetSigmaFactor | ( | ) | const [virtual] |
virtual InputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::GetThreshold | ( | ) | const [virtual] |
Get the computed threshold.
static Pointer itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::New | ( | ) | [static] |
Method for creation through the object factory.
Reimplemented from itk::Object.
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::operator= | ( | const Self & | ) | [private] |
Image related typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::PrintSelf | ( | std::ostream & | os, |
Indent | indent | ||
) | const [protected, virtual] |
Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetInput1 | ( | const TInputImage * | input | ) | [inline] |
Set the input image
Definition at line 133 of file itkKappaSigmaThresholdImageFilter.h.
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetInput2 | ( | const MaskImageType * | input | ) | [inline] |
Set the marker image
Definition at line 139 of file itkKappaSigmaThresholdImageFilter.h.
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetInsideValue | ( | OutputPixelType | _arg | ) | [virtual] |
Set the "inside" pixel value. The default value NumericTraits<OutputPixelType>::max()
void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskImage | ( | const MaskImageType * | input | ) | [inline] |
End concept checking Set the mask image
Definition at line 120 of file itkKappaSigmaThresholdImageFilter.h.
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetMaskValue | ( | MaskPixelType | _arg | ) | [virtual] |
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetNumberOfIterations | ( | unsigned int | _arg | ) | [virtual] |
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetOutsideValue | ( | OutputPixelType | _arg | ) | [virtual] |
Set the "outside" pixel value. The default value NumericTraits<OutputPixelType>::Zero.
virtual void itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::SetSigmaFactor | ( | double | _arg | ) | [virtual] |
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::typedef | ( | Concept::Comparable< OutputPixelType > | ) |
Begin concept checking This class requires OutputComparableCheck in the form of ( Concept::Comparable< OutputPixelType > )
itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::typedef | ( | Concept::OStreamWritable< OutputPixelType > | ) |
This class requires OutputOStreamWritableCheck in the form of ( Concept::OStreamWritable< OutputPixelType > )
const unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::InputImageDimension = TInputImage::ImageDimension [static, protected] |
Image related typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 164 of file itkKappaSigmaThresholdImageFilter.h.
OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_InsideValue [private] |
Definition at line 176 of file itkKappaSigmaThresholdImageFilter.h.
MaskPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_MaskValue [private] |
Definition at line 172 of file itkKappaSigmaThresholdImageFilter.h.
unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_NumberOfIterations [private] |
Definition at line 174 of file itkKappaSigmaThresholdImageFilter.h.
OutputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_OutsideValue [private] |
Definition at line 177 of file itkKappaSigmaThresholdImageFilter.h.
double itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_SigmaFactor [private] |
Definition at line 173 of file itkKappaSigmaThresholdImageFilter.h.
InputPixelType itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::m_Threshold [private] |
Definition at line 175 of file itkKappaSigmaThresholdImageFilter.h.
const unsigned int itk::KappaSigmaThresholdImageFilter< TInputImage, TMaskImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension [static, protected] |
Image related typedefs.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
Definition at line 166 of file itkKappaSigmaThresholdImageFilter.h.